RNA–Protein interactions for RNA: ENST00000577001.1

PRPF8-216, Transcript of pre-mRNA processing factor 8, human

TSL 5

Gene PRPF8, Length 3,274 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PRPF8-216	ENST00000577001	FXR1	P51114	621 aa	Known RBP eCLIP	16.85	■□□□□ 0.29	1e-6	■■■■□ 21.9
PRPF8-216	ENST00000577001	FAM193A	P78312	1265 aa		16.85	■□□□□ 0.29
PRPF8-216	ENST00000577001	DIXDC1	Q155Q3	683 aa		16.85	■□□□□ 0.29
PRPF8-216	ENST00000577001	SLIT3	O75094	1523 aa		16.85	■□□□□ 0.29
PRPF8-216	ENST00000577001	TSPY2	A6NKD2	308 aa		16.85	■□□□□ 0.29
PRPF8-216	ENST00000577001	CBFA2T2	O43439	604 aa		16.85	■□□□□ 0.29
PRPF8-216	ENST00000577001	UQCRFS1P1	P0C7P4	283 aa		16.85	■□□□□ 0.29
PRPF8-216	ENST00000577001	IFNAR1	P17181	557 aa		16.85	■□□□□ 0.29
PRPF8-216	ENST00000577001	ATP2B2	Q01814	1243 aa		16.85	■□□□□ 0.29
PRPF8-216	ENST00000577001	TERF2	Q15554	542 aa		16.85	■□□□□ 0.29
PRPF8-216	ENST00000577001	SPECC1L	Q69YQ0	1117 aa		16.85	■□□□□ 0.29
PRPF8-216	ENST00000577001	STAG2	Q8N3U4	1231 aa		16.85	■□□□□ 0.29
PRPF8-216	ENST00000577001	FEZ1	Q99689	392 aa		16.85	■□□□□ 0.29
PRPF8-216	ENST00000577001	HDAC6	Q9UBN7	1215 aa		16.85	■□□□□ 0.29
PRPF8-216	ENST00000577001	USP17L3	A6NCW0	530 aa		16.84	■□□□□ 0.29
PRPF8-216	ENST00000577001	USP17L4	A6NCW7	530 aa		16.84	■□□□□ 0.29
PRPF8-216	ENST00000577001	USP17L1	Q7RTZ2	530 aa		16.84	■□□□□ 0.29
PRPF8-216	ENST00000577001	GJA10	Q969M2	543 aa		16.84	■□□□□ 0.29
PRPF8-216	ENST00000577001	POLD4	Q9HCU8	107 aa		16.84	■□□□□ 0.29
PRPF8-216	ENST00000577001	IMPACT	Q9P2X3	320 aa		16.84	■□□□□ 0.29
PRPF8-216	ENST00000577001	PTPRE	P23469	700 aa		16.84	■□□□□ 0.29
PRPF8-216	ENST00000577001	PLA2G4A	P47712	749 aa		16.84	■□□□□ 0.29
PRPF8-216	ENST00000577001	MCM9	Q9NXL9	1143 aa		16.84	■□□□□ 0.29
PRPF8-216	ENST00000577001	NKRF	O15226	690 aa	Known RBP eCLIP	16.83	■□□□□ 0.29
PRPF8-216	ENST00000577001	PPP6R2	O75170	966 aa		16.83	■□□□□ 0.29
PRPF8-216	ENST00000577001	ZPR1	O75312	459 aa		16.83	■□□□□ 0.29
PRPF8-216	ENST00000577001	PAGE5	Q96GU1	130 aa		16.83	■□□□□ 0.29
PRPF8-216	ENST00000577001	KRT23	Q9C075	422 aa		16.83	■□□□□ 0.29
PRPF8-216	ENST00000577001	FHOD1	Q9Y613	1164 aa		16.83	■□□□□ 0.29
PRPF8-216	ENST00000577001	ARFGEF2	Q9Y6D5	1785 aa		16.83	■□□□□ 0.29
PRPF8-216	ENST00000577001	PTPRO	Q16827	1216 aa		16.83	■□□□□ 0.28
PRPF8-216	ENST00000577001	NCAPH2	Q6IBW4	605 aa		16.83	■□□□□ 0.28
PRPF8-216	ENST00000577001	CHP1	Q99653	195 aa		16.83	■□□□□ 0.28
PRPF8-216	ENST00000577001	PARD6B	Q9BYG5	372 aa		16.83	■□□□□ 0.28
PRPF8-216	ENST00000577001	N4BP1	O75113	896 aa	Known RBP	16.83	■□□□□ 0.28
PRPF8-216	ENST00000577001	DEXI	O95424	95 aa		16.83	■□□□□ 0.28
PRPF8-216	ENST00000577001	KLK7	P49862	253 aa		16.83	■□□□□ 0.28
PRPF8-216	ENST00000577001	CATIP	Q7Z7H3	387 aa		16.83	■□□□□ 0.28
PRPF8-216	ENST00000577001	SRBD1	Q8N5C6	995 aa	Known RBP	16.83	■□□□□ 0.28
PRPF8-216	ENST00000577001	EP400	Q96L91	3159 aa		16.82	■□□□□ 0.28
PRPF8-216	ENST00000577001	MDM2	Q00987	491 aa	Predicted RBP	16.82	■□□□□ 0.28
PRPF8-216	ENST00000577001	GSPT2	Q8IYD1	628 aa	Known RBP	16.82	■□□□□ 0.28
PRPF8-216	ENST00000577001	ESR2	Q92731	530 aa		16.82	■□□□□ 0.28
PRPF8-216	ENST00000577001	MORC2	Q9Y6X9	1032 aa	Predicted RBP	16.82	■□□□□ 0.28
PRPF8-216	ENST00000577001	ACTN4	O43707	911 aa	Known RBP	16.82	■□□□□ 0.28
PRPF8-216	ENST00000577001	MATR3	P43243	847 aa	Known RBP eCLIP	16.82	■□□□□ 0.28
PRPF8-216	ENST00000577001	TMEM139	Q8IV31	216 aa		16.82	■□□□□ 0.28
PRPF8-216	ENST00000577001	SYNRG	Q9UMZ2	1314 aa		16.82	■□□□□ 0.28
PRPF8-216	ENST00000577001	CCDC152	Q4G0S7	254 aa		16.81	■□□□□ 0.28
PRPF8-216	ENST00000577001	CLEC10A	Q8IUN9	316 aa		16.81	■□□□□ 0.28
PRPF8-216	ENST00000577001	SLC35F6	Q8N357	371 aa		16.81	■□□□□ 0.28
PRPF8-216	ENST00000577001	ZSCAN10	Q96SZ4	725 aa	Predicted RBP	16.81	■□□□□ 0.28
PRPF8-216	ENST00000577001	GTPBP4	Q9BZE4	634 aa	Known RBP	16.81	■□□□□ 0.28
PRPF8-216	ENST00000577001		F8W031	263 aa	Predicted RBP	16.81	■□□□□ 0.28
PRPF8-216	ENST00000577001	IKBKB	O14920	756 aa		16.81	■□□□□ 0.28
PRPF8-216	ENST00000577001	OAS2	P29728	719 aa	Known RBP	16.81	■□□□□ 0.28
PRPF8-216	ENST00000577001	KRT2	P35908	639 aa		16.81	■□□□□ 0.28
PRPF8-216	ENST00000577001	PKN1	Q16512	942 aa		16.81	■□□□□ 0.28
PRPF8-216	ENST00000577001	TTC38	Q5R3I4	469 aa		16.81	■□□□□ 0.28
PRPF8-216	ENST00000577001	HEATR3	Q7Z4Q2	680 aa		16.81	■□□□□ 0.28
PRPF8-216	ENST00000577001	RGS22	Q8NE09	1264 aa		16.81	■□□□□ 0.28
PRPF8-216	ENST00000577001	ZNF384	Q8TF68	577 aa		16.81	■□□□□ 0.28
PRPF8-216	ENST00000577001	RFX7	Q2KHR2	1363 aa		16.81	■□□□□ 0.28
PRPF8-216	ENST00000577001	AKR1B15	C9JRZ8	316 aa	Predicted RBP	16.81	■□□□□ 0.28
PRPF8-216	ENST00000577001	ARID4A	P29374	1257 aa	Predicted RBP	16.81	■□□□□ 0.28
PRPF8-216	ENST00000577001	RILPL1	Q5EBL4	403 aa		16.81	■□□□□ 0.28
PRPF8-216	ENST00000577001	KANSL2	Q9H9L4	492 aa		16.81	■□□□□ 0.28
PRPF8-216	ENST00000577001	TRPM3	Q9HCF6	1732 aa	Predicted RBP	16.8	■□□□□ 0.28
PRPF8-216	ENST00000577001	FGFR2	P21802	821 aa		16.8	■□□□□ 0.28
PRPF8-216	ENST00000577001	GRIK5	Q16478	980 aa		16.8	■□□□□ 0.28
PRPF8-216	ENST00000577001	INF2	Q27J81	1249 aa		16.8	■□□□□ 0.28
PRPF8-216	ENST00000577001	MRC1	P22897	1456 aa		16.8	■□□□□ 0.28
PRPF8-216	ENST00000577001	NWD2	Q9ULI1	1742 aa		16.8	■□□□□ 0.28
PRPF8-216	ENST00000577001	LOC102724428	A0A0B4J2F2	783 aa		16.8	■□□□□ 0.28
PRPF8-216	ENST00000577001	PSD	A5PKW4	1024 aa	Predicted RBP	16.8	■□□□□ 0.28
PRPF8-216	ENST00000577001	SIK1	P57059	783 aa		16.8	■□□□□ 0.28
PRPF8-216	ENST00000577001	BMS1	Q14692	1282 aa	Known RBP	16.8	■□□□□ 0.28
PRPF8-216	ENST00000577001	PPIL4	Q8WUA2	492 aa	Known RBP eCLIP	16.8	■□□□□ 0.28
PRPF8-216	ENST00000577001	HOOK1	Q9UJC3	728 aa	Known RBP	16.8	■□□□□ 0.28
PRPF8-216	ENST00000577001	ARHGAP6	O43182	974 aa		16.8	■□□□□ 0.28
PRPF8-216	ENST00000577001	ZSCAN12	O43309	604 aa		16.8	■□□□□ 0.28
PRPF8-216	ENST00000577001	SAMD1	Q6SPF0	538 aa	Predicted RBP	16.8	■□□□□ 0.28
PRPF8-216	ENST00000577001	IQCA1	Q86XH1	822 aa		16.8	■□□□□ 0.28
PRPF8-216	ENST00000577001	ANKRD18A	Q8IVF6	992 aa		16.8	■□□□□ 0.28
PRPF8-216	ENST00000577001	TADA3	O75528	432 aa		16.79	■□□□□ 0.28
PRPF8-216	ENST00000577001	LMAN1	P49257	510 aa		16.79	■□□□□ 0.28
PRPF8-216	ENST00000577001	CYP27A1	Q02318	531 aa		16.79	■□□□□ 0.28
PRPF8-216	ENST00000577001	UBXN1	Q04323	297 aa		16.79	■□□□□ 0.28
PRPF8-216	ENST00000577001	RAD51AP2	Q09MP3	1159 aa		16.79	■□□□□ 0.28
PRPF8-216	ENST00000577001	SGMS1	Q86VZ5	419 aa		16.79	■□□□□ 0.28
PRPF8-216	ENST00000577001	CCDC87	Q9NVE4	849 aa		16.79	■□□□□ 0.28
PRPF8-216	ENST00000577001	SCN11A	Q9UI33	1791 aa		16.79	■□□□□ 0.28
PRPF8-216	ENST00000577001	PMS1	P54277	932 aa	Known RBP	16.79	■□□□□ 0.28
PRPF8-216	ENST00000577001	TRIM28	Q13263	835 aa	Known RBP	16.79	■□□□□ 0.28
PRPF8-216	ENST00000577001	MORC3	Q14149	939 aa		16.79	■□□□□ 0.28
PRPF8-216	ENST00000577001	DDB1	Q16531	1140 aa		16.79	■□□□□ 0.28
PRPF8-216	ENST00000577001	INTS5	Q6P9B9	1019 aa	Known RBP	16.79	■□□□□ 0.28
PRPF8-216	ENST00000577001	ANKRD13C	Q8N6S4	541 aa		16.79	■□□□□ 0.28
PRPF8-216	ENST00000577001	CTCFL	Q8NI51	663 aa	Predicted RBP	16.79	■□□□□ 0.28
PRPF8-216	ENST00000577001	LIFR	P42702	1097 aa		16.78	■□□□□ 0.28

Retrieved 100 of 20,778 RNA–protein pairs in 67.8 ms