RNA–Protein interactions for RNA: ENST00000575513.1

CIITA-210, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 2

Gene CIITA, Length 516 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-210ENST00000575513 NMIQ13287 307 aaPredicted RBP16.2■□□□□ 0.18
CIITA-210ENST00000575513 KIF22Q14807 665 aa16.2■□□□□ 0.18
CIITA-210ENST00000575513 SEPT2Q15019 361 aa16.2■□□□□ 0.18
CIITA-210ENST00000575513 TTC22Q5TAA0 569 aa16.2■□□□□ 0.18
CIITA-210ENST00000575513 FAM227BQ96M60 508 aa16.2■□□□□ 0.18
CIITA-210ENST00000575513 KANSL2Q9H9L4 492 aa16.2■□□□□ 0.18
CIITA-210ENST00000575513 EMILIN3Q9NT22 766 aa16.2■□□□□ 0.18
CIITA-210ENST00000575513 SMIM22K7EJ46 135 aa16.19■□□□□ 0.18
CIITA-210ENST00000575513 FOXP2O15409 715 aa16.19■□□□□ 0.18
CIITA-210ENST00000575513 AKR1B1P15121 316 aa16.19■□□□□ 0.18
CIITA-210ENST00000575513 GCLCP48506 637 aaPredicted RBP16.19■□□□□ 0.18
CIITA-210ENST00000575513 LACTBP83111 547 aaPredicted RBP16.19■□□□□ 0.18
CIITA-210ENST00000575513 CCDC129Q6ZRS4 1044 aa16.19■□□□□ 0.18
CIITA-210ENST00000575513 OTOP1Q7RTM1 612 aa16.19■□□□□ 0.18
CIITA-210ENST00000575513 SMCR8Q8TEV9 937 aaPredicted RBP16.19■□□□□ 0.18
CIITA-210ENST00000575513 ABHD8Q96I13 439 aa16.19■□□□□ 0.18
CIITA-210ENST00000575513 EFCC1Q9HA90 598 aa16.19■□□□□ 0.18
CIITA-210ENST00000575513 MKNK2Q9HBH9 465 aa16.19■□□□□ 0.18
CIITA-210ENST00000575513 CPA4Q9UI42 421 aa16.19■□□□□ 0.18
CIITA-210ENST00000575513 ZMYM6O95789 1325 aa16.19■□□□□ 0.18
CIITA-210ENST00000575513 ATAD5Q96QE3 1844 aa16.18■□□□□ 0.18
CIITA-210ENST00000575513 PDE4BQ07343 736 aa16.18■□□□□ 0.18
CIITA-210ENST00000575513 PPARAQ07869 468 aa16.18■□□□□ 0.18
CIITA-210ENST00000575513 FBXO46Q6PJ61 603 aaPredicted RBP16.18■□□□□ 0.18
CIITA-210ENST00000575513 CD99L2Q8TCZ2 262 aa16.18■□□□□ 0.18
CIITA-210ENST00000575513 ACER1Q8TDN7 264 aa16.18■□□□□ 0.18
CIITA-210ENST00000575513 FEZ1Q99689 392 aa16.18■□□□□ 0.18
CIITA-210ENST00000575513 ASCC2Q9H1I8 757 aaPredicted RBP16.18■□□□□ 0.18
CIITA-210ENST00000575513 SH2D4AQ9H788 454 aa16.18■□□□□ 0.18
CIITA-210ENST00000575513 DIAPH3Q9NSV4 1193 aa16.18■□□□□ 0.18
CIITA-210ENST00000575513 ANAPC4Q9UJX5 808 aa16.18■□□□□ 0.18
CIITA-210ENST00000575513 CCDC171Q6TFL3 1326 aa16.18■□□□□ 0.18
CIITA-210ENST00000575513 HSPD1P10809 573 aaKnown RBP16.17■□□□□ 0.18
CIITA-210ENST00000575513 GSPT1P15170 499 aaKnown RBP16.17■□□□□ 0.18
CIITA-210ENST00000575513 RASA1P20936 1047 aa16.17■□□□□ 0.18
CIITA-210ENST00000575513 VPS53Q5VIR6 699 aa16.17■□□□□ 0.18
CIITA-210ENST00000575513 SIAH1Q8IUQ4 282 aa16.17■□□□□ 0.18
CIITA-210ENST00000575513 ZNF444Q8N0Y2 327 aaPredicted RBP16.17■□□□□ 0.18
CIITA-210ENST00000575513 GTF3C2Q8WUA4 911 aaPredicted RBP16.17■□□□□ 0.18
CIITA-210ENST00000575513 ARHGEF10LQ9HCE6 1279 aa16.17■□□□□ 0.18
CIITA-210ENST00000575513 TMX2Q9Y320 296 aa16.17■□□□□ 0.18
CIITA-210ENST00000575513 TRIM17Q9Y577 477 aa16.17■□□□□ 0.18
CIITA-210ENST00000575513 PTPRFP10586 1907 aa16.17■□□□□ 0.18
CIITA-210ENST00000575513 BAZ2AQ9UIF9 1905 aaKnown RBP16.16■□□□□ 0.18
CIITA-210ENST00000575513 A0A1W2PRG0 241 aa16.16■□□□□ 0.18
CIITA-210ENST00000575513 USP17L15C9J2P7 530 aa16.16■□□□□ 0.18
CIITA-210ENST00000575513 USP17L13C9JLJ4 530 aa16.16■□□□□ 0.18
CIITA-210ENST00000575513 USP17L11C9JVI0 530 aa16.16■□□□□ 0.18
CIITA-210ENST00000575513 USP17L18D6R9N7 530 aa16.16■□□□□ 0.18
CIITA-210ENST00000575513 USP17L22D6RA61 530 aa16.16■□□□□ 0.18
CIITA-210ENST00000575513 USP17L17D6RBQ6 530 aa16.16■□□□□ 0.18
CIITA-210ENST00000575513 USP17L19D6RCP7 530 aa16.16■□□□□ 0.18
CIITA-210ENST00000575513 USP17L20D6RJB6 530 aa16.16■□□□□ 0.18
CIITA-210ENST00000575513 FGAP02671 866 aa16.16■□□□□ 0.18
CIITA-210ENST00000575513 FGRP09769 529 aa16.16■□□□□ 0.18
CIITA-210ENST00000575513 PRMT2P55345 433 aa16.16■□□□□ 0.18
CIITA-210ENST00000575513 IRX3P78415 501 aaPredicted RBP16.16■□□□□ 0.18
CIITA-210ENST00000575513 ICA1Q05084 483 aa16.16■□□□□ 0.18
CIITA-210ENST00000575513 USP17L24Q0WX57 530 aa16.16■□□□□ 0.18
CIITA-210ENST00000575513 FAM110CQ1W6H9 321 aa16.16■□□□□ 0.18
CIITA-210ENST00000575513 ZNF589Q86UQ0 364 aaPredicted RBP16.16■□□□□ 0.18
CIITA-210ENST00000575513 LPAR1Q92633 364 aa16.16■□□□□ 0.18
CIITA-210ENST00000575513 CCDC136Q96JN2 1154 aa16.16■□□□□ 0.18
CIITA-210ENST00000575513 HOXD10P28358 340 aa16.15■□□□□ 0.18
CIITA-210ENST00000575513 CWC27Q6UX04 472 aaKnown RBP16.15■□□□□ 0.18
CIITA-210ENST00000575513 CATSPERGQ6ZRH7 1159 aa16.15■□□□□ 0.18
CIITA-210ENST00000575513 P2RX7Q99572 595 aaKnown RBP16.15■□□□□ 0.18
CIITA-210ENST00000575513 GNL3Q9BVP2 549 aaKnown RBP eCLIP16.15■□□□□ 0.18
CIITA-210ENST00000575513 PPP4R2Q9NY27 417 aa16.15■□□□□ 0.18
CIITA-210ENST00000575513 NYAP2Q9P242 653 aa16.15■□□□□ 0.18
CIITA-210ENST00000575513 SYNPO2Q9UMS6 1093 aa16.15■□□□□ 0.18
CIITA-210ENST00000575513 PTPN22Q9Y2R2 807 aa16.15■□□□□ 0.18
CIITA-210ENST00000575513 LOC285556D6RIA3 1793 aa16.15■□□□□ 0.18
CIITA-210ENST00000575513 PCP11498 1178 aaKnown RBP16.14■□□□□ 0.17
CIITA-210ENST00000575513 EEF2P13639 858 aaKnown RBP16.14■□□□□ 0.17
CIITA-210ENST00000575513 VCAM1P19320 739 aa16.14■□□□□ 0.17
CIITA-210ENST00000575513 PSMC4P43686 418 aa16.14■□□□□ 0.17
CIITA-210ENST00000575513 CAP1Q01518 475 aa16.14■□□□□ 0.17
CIITA-210ENST00000575513 PPP4R3BQ5MIZ7 849 aa16.14■□□□□ 0.17
CIITA-210ENST00000575513 LBX2Q6XYB7 198 aa16.14■□□□□ 0.17
CIITA-210ENST00000575513 MORF4L1Q9UBU8 362 aa16.14■□□□□ 0.17
CIITA-210ENST00000575513 IGKV6D-41A0A0C4DH26 115 aa16.13■□□□□ 0.17
CIITA-210ENST00000575513 NT5C2P49902 561 aa16.13■□□□□ 0.17
CIITA-210ENST00000575513 FCGRTP55899 365 aa16.13■□□□□ 0.17
CIITA-210ENST00000575513 HERVK_113P62684 666 aa16.13■□□□□ 0.17
CIITA-210ENST00000575513 ANKRD13CQ8N6S4 541 aa16.13■□□□□ 0.17
CIITA-210ENST00000575513 NEDD1Q8NHV4 660 aa16.13■□□□□ 0.17
CIITA-210ENST00000575513 RUFY2Q8WXA3 655 aa16.13■□□□□ 0.17
CIITA-210ENST00000575513 MKL1Q969V6 931 aa16.13■□□□□ 0.17
CIITA-210ENST00000575513 TRIM47Q96LD4 638 aa16.13■□□□□ 0.17
CIITA-210ENST00000575513 DSCC1Q9BVC3 393 aa16.13■□□□□ 0.17
CIITA-210ENST00000575513 VCPKMTQ9H867 229 aa16.13■□□□□ 0.17
CIITA-210ENST00000575513 HOXC10Q9NYD6 342 aa16.13■□□□□ 0.17
CIITA-210ENST00000575513 HPS5Q9UPZ3 1129 aa16.13■□□□□ 0.17
CIITA-210ENST00000575513 DDX52Q9Y2R4 599 aaKnown RBP eCLIP16.13■□□□□ 0.17
CIITA-210ENST00000575513 PLIN4Q96Q06 1357 aa16.13■□□□□ 0.17
CIITA-210ENST00000575513 ORC4O43929 436 aa16.12■□□□□ 0.17
CIITA-210ENST00000575513 PRDM1O75626 825 aa16.12■□□□□ 0.17
CIITA-210ENST00000575513 FMNL1O95466 1100 aaPredicted RBP16.12■□□□□ 0.17
CIITA-210ENST00000575513 ZYXQ15942 572 aaKnown RBP16.12■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms