RNA–Protein interactions for RNA: ENST00000570546.5

CIITA-204, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 2

Gene CIITA, Length 5,342 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-204ENST00000570546 TMEM87AQ8NBN3 555 aa17.14■□□□□ 0.33
CIITA-204ENST00000570546 GOLGA6AQ9NYA3 693 aa17.14■□□□□ 0.33
CIITA-204ENST00000570546 LAMC1P11047 1609 aa17.14■□□□□ 0.33
CIITA-204ENST00000570546 HSPA2P54652 639 aa17.14■□□□□ 0.33
CIITA-204ENST00000570546 NECTIN1Q15223 517 aa17.14■□□□□ 0.33
CIITA-204ENST00000570546 HAUS3Q68CZ6 603 aa17.14■□□□□ 0.33
CIITA-204ENST00000570546 CCDC50Q8IVM0 306 aa17.14■□□□□ 0.33
CIITA-204ENST00000570546 IFT20Q8IY31 132 aa17.14■□□□□ 0.33
CIITA-204ENST00000570546 CNBD1Q8NA66 436 aa17.14■□□□□ 0.33
CIITA-204ENST00000570546 PPP1R13BQ96KQ4 1090 aa17.14■□□□□ 0.33
CIITA-204ENST00000570546 CHD1O14646 1710 aa17.14■□□□□ 0.33
CIITA-204ENST00000570546 CALUO43852 315 aaPredicted RBP17.14■□□□□ 0.33
CIITA-204ENST00000570546 EEF2P13639 858 aaKnown RBP17.14■□□□□ 0.33
CIITA-204ENST00000570546 RNASE9P60153 205 aaKnown RBP17.14■□□□□ 0.33
CIITA-204ENST00000570546 CALCRLQ16602 461 aa17.14■□□□□ 0.33
CIITA-204ENST00000570546 MAGEA1P43355 309 aa17.13■□□□□ 0.33
CIITA-204ENST00000570546 SLC39A14Q15043 492 aa17.13■□□□□ 0.33
CIITA-204ENST00000570546 GRIPAP1Q4V328 841 aa17.13■□□□□ 0.33
CIITA-204ENST00000570546 POLR3EQ9NVU0 708 aa17.13■□□□□ 0.33
CIITA-204ENST00000570546 ARPP21Q9UBL0 812 aaPredicted RBP17.13■□□□□ 0.33
CIITA-204ENST00000570546 EFCAB8A8MWE9 144 aa17.13■□□□□ 0.33
CIITA-204ENST00000570546 BRD3Q15059 726 aa17.13■□□□□ 0.33
CIITA-204ENST00000570546 QRICH2Q9H0J4 1663 aa17.13■□□□□ 0.33
CIITA-204ENST00000570546 CETN3O15182 167 aa17.13■□□□□ 0.33
CIITA-204ENST00000570546 SYNCQ9H7C4 482 aa17.13■□□□□ 0.33
CIITA-204ENST00000570546 TNKSO95271 1327 aa17.13■□□□□ 0.33
CIITA-204ENST00000570546 PPP6R2O75170 966 aa17.13■□□□□ 0.33
CIITA-204ENST00000570546 UBE3CQ15386 1083 aa17.13■□□□□ 0.33
CIITA-204ENST00000570546 WHAMMP3Q1A5X7 153 aa17.13■□□□□ 0.33
CIITA-204ENST00000570546 TRAPPC3LQ5T215 181 aa17.13■□□□□ 0.33
CIITA-204ENST00000570546 CERS3Q8IU89 383 aa17.13■□□□□ 0.33
CIITA-204ENST00000570546 KIAA1524Q8TCG1 905 aa17.13■□□□□ 0.33
CIITA-204ENST00000570546 FTOQ9C0B1 505 aaKnown RBP eCLIP17.13■□□□□ 0.33
CIITA-204ENST00000570546 UTP18Q9Y5J1 556 aaKnown RBP eCLIP17.13■□□□□ 0.33
CIITA-204ENST00000570546 HOMER2Q9NSB8 354 aa17.12■□□□□ 0.33
CIITA-204ENST00000570546 GOLGA6BA6NDN3 693 aa17.12■□□□□ 0.33
CIITA-204ENST00000570546 NF2P35240 595 aa17.12■□□□□ 0.33
CIITA-204ENST00000570546 PPP1R7Q15435 360 aa17.12■□□□□ 0.33
CIITA-204ENST00000570546 SEL1L2Q5TEA6 688 aa17.12■□□□□ 0.33
CIITA-204ENST00000570546 GPIHBP1Q8IV16 184 aa17.12■□□□□ 0.33
CIITA-204ENST00000570546 MTUS1Q9ULD2 1270 aa17.12■□□□□ 0.33
CIITA-204ENST00000570546 RESTQ13127 1097 aa17.12■□□□□ 0.33
CIITA-204ENST00000570546 DPCR1Q3MIW9 517 aa17.12■□□□□ 0.33
CIITA-204ENST00000570546 CCDC25Q86WR0 208 aa17.12■□□□□ 0.33
CIITA-204ENST00000570546 SDR42E1Q8WUS8 393 aa17.12■□□□□ 0.33
CIITA-204ENST00000570546 TTC14Q96N46 770 aa17.12■□□□□ 0.33
CIITA-204ENST00000570546 RCOR1Q9UKL0 485 aa17.12■□□□□ 0.33
CIITA-204ENST00000570546 ZBTB21Q9ULJ3 1066 aa17.12■□□□□ 0.33
CIITA-204ENST00000570546 RNF17Q9BXT8 1623 aaKnown RBP17.12■□□□□ 0.33
CIITA-204ENST00000570546 USP17L12C9JPN9 530 aa17.11■□□□□ 0.33
CIITA-204ENST00000570546 USP17L21D6R901 530 aa17.11■□□□□ 0.33
CIITA-204ENST00000570546 BCAMP50895 628 aa17.11■□□□□ 0.33
CIITA-204ENST00000570546 ARHGEF25Q86VW2 580 aa17.11■□□□□ 0.33
CIITA-204ENST00000570546 OGFOD1Q8N543 542 aa17.11■□□□□ 0.33
CIITA-204ENST00000570546 CACTINQ8WUQ7 758 aaKnown RBP17.11■□□□□ 0.33
CIITA-204ENST00000570546 ATP6V0A2Q9Y487 856 aa17.11■□□□□ 0.33
CIITA-204ENST00000570546 ABCA6Q8N139 1617 aa17.11■□□□□ 0.33
CIITA-204ENST00000570546 SASH1O94885 1247 aa17.11■□□□□ 0.33
CIITA-204ENST00000570546 SPATA1Q5VX52 437 aa17.11■□□□□ 0.33
CIITA-204ENST00000570546 FCHSD1Q86WN1 690 aa17.11■□□□□ 0.33
CIITA-204ENST00000570546 ERCC3P19447 782 aa17.11■□□□□ 0.33
CIITA-204ENST00000570546 TNFAIP3P21580 790 aa17.11■□□□□ 0.33
CIITA-204ENST00000570546 HPDP32754 393 aaPredicted RBP17.11■□□□□ 0.33
CIITA-204ENST00000570546 MAPKAPK5Q8IW41 473 aa17.11■□□□□ 0.33
CIITA-204ENST00000570546 BLIDQ8IZY5 108 aa17.11■□□□□ 0.33
CIITA-204ENST00000570546 TGFBRAP1Q8WUH2 860 aa17.11■□□□□ 0.33
CIITA-204ENST00000570546 CCDC114Q96M63 670 aa17.11■□□□□ 0.33
CIITA-204ENST00000570546 PSMB7Q99436 277 aa17.11■□□□□ 0.33
CIITA-204ENST00000570546 NAP1L3Q99457 506 aaPredicted RBP17.11■□□□□ 0.33
CIITA-204ENST00000570546 EYA3Q99504 573 aa17.11■□□□□ 0.33
CIITA-204ENST00000570546 GREM2Q9H772 168 aa17.11■□□□□ 0.33
CIITA-204ENST00000570546 GGA1Q9UJY5 639 aa17.11■□□□□ 0.33
CIITA-204ENST00000570546 TYW1BQ6NUM6 668 aa17.11■□□□□ 0.33
CIITA-204ENST00000570546 OR8K1Q8NGG5 319 aa17.11■□□□□ 0.33
CIITA-204ENST00000570546 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP17.11■□□□□ 0.33
CIITA-204ENST00000570546 SAR1BQ9Y6B6 198 aa17.11■□□□□ 0.33
CIITA-204ENST00000570546 GLT8D2Q9H1C3 349 aa17.11■□□□□ 0.33
CIITA-204ENST00000570546 TBC1D7Q9P0N9 293 aa17.11■□□□□ 0.33
CIITA-204ENST00000570546 CALCOCO2Q13137 446 aa17.1■□□□□ 0.33
CIITA-204ENST00000570546 CCDC84Q86UT8 332 aaPredicted RBP17.1■□□□□ 0.33
CIITA-204ENST00000570546 IQCDQ96DY2 449 aa17.1■□□□□ 0.33
CIITA-204ENST00000570546 IFIH1Q9BYX4 1025 aaKnown RBP17.1■□□□□ 0.33
CIITA-204ENST00000570546 IMPG2Q9BZV3 1241 aa17.1■□□□□ 0.33
CIITA-204ENST00000570546 HERC4Q5GLZ8 1057 aaPredicted RBP17.1■□□□□ 0.33
CIITA-204ENST00000570546 FAM207AQ9NSI2 230 aaPredicted RBP17.1■□□□□ 0.33
CIITA-204ENST00000570546 A0A087WWV3 80 aa17.1■□□□□ 0.33
CIITA-204ENST00000570546 ATP2A1O14983 1001 aa17.1■□□□□ 0.33
CIITA-204ENST00000570546 PHKA1P46020 1223 aa17.1■□□□□ 0.33
CIITA-204ENST00000570546 SFMBT2Q5VUG0 894 aa17.1■□□□□ 0.33
CIITA-204ENST00000570546 NCAPH2Q6IBW4 605 aa17.1■□□□□ 0.33
CIITA-204ENST00000570546 B4GALNT4Q76KP1 1039 aa17.1■□□□□ 0.33
CIITA-204ENST00000570546 LINC00301Q8NCQ3 95 aa17.1■□□□□ 0.33
CIITA-204ENST00000570546 SYMPKQ92797 1274 aaKnown RBP17.1■□□□□ 0.33
CIITA-204ENST00000570546 TSKSQ9UJT2 592 aa17.1■□□□□ 0.33
CIITA-204ENST00000570546 SAMD15Q9P1V8 674 aa17.1■□□□□ 0.33
CIITA-204ENST00000570546 PCDHA5Q9Y5H7 936 aa17.1■□□□□ 0.33
CIITA-204ENST00000570546 MAP3K15Q6ZN16 1313 aa17.09■□□□□ 0.33
CIITA-204ENST00000570546 IKBKBO14920 756 aa17.09■□□□□ 0.33
CIITA-204ENST00000570546 CHMP2AO43633 222 aa17.09■□□□□ 0.33
CIITA-204ENST00000570546 PTPN12Q05209 780 aaKnown RBP17.09■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 15 ms