RNA–Protein interactions for RNA: ENST00000569422.1

LINC00558-201, long intergenic non-protein coding RNA 558, humanhuman

TSL 1 (best) BASIC

Gene LINC00558, Length 3,163 nt, Biotype lincRNA.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00558-201ENST00000569422 TPTE2Q6XPS3 522 aa10.01□□□□□ -0.81
LINC00558-201ENST00000569422 SMYD4Q8IYR2 804 aaPredicted RBP10.01□□□□□ -0.81
LINC00558-201ENST00000569422 PDCL2Q8N4E4 241 aa10.01□□□□□ -0.81
LINC00558-201ENST00000569422 SMARCE1Q969G3 411 aa10.01□□□□□ -0.81
LINC00558-201ENST00000569422 FOXP1Q9H334 677 aaPredicted RBP10.01□□□□□ -0.81
LINC00558-201ENST00000569422 EIF4ENIF1Q9NRA8 985 aaKnown RBP10.01□□□□□ -0.81
LINC00558-201ENST00000569422 TUBE1Q9UJT0 475 aa10.01□□□□□ -0.81
LINC00558-201ENST00000569422 ZNF804BA4D1E1 1349 aa10.01□□□□□ -0.81
LINC00558-201ENST00000569422 STK36Q9NRP7 1315 aa10.01□□□□□ -0.81
LINC00558-201ENST00000569422 TRIM75PA6NK02 468 aa10.01□□□□□ -0.81
LINC00558-201ENST00000569422 PTPREP23469 700 aa10.01□□□□□ -0.81
LINC00558-201ENST00000569422 CDC25AP30304 524 aa10.01□□□□□ -0.81
LINC00558-201ENST00000569422 KRT2P35908 639 aa10.01□□□□□ -0.81
LINC00558-201ENST00000569422 USP5P45974 858 aa10.01□□□□□ -0.81
LINC00558-201ENST00000569422 GSDMDP57764 484 aa10.01□□□□□ -0.81
LINC00558-201ENST00000569422 PKN1Q16512 942 aa10.01□□□□□ -0.81
LINC00558-201ENST00000569422 PIK3AP1Q6ZUJ8 805 aa10.01□□□□□ -0.81
LINC00558-201ENST00000569422 CCAR2Q8N163 923 aaKnown RBP10.01□□□□□ -0.81
LINC00558-201ENST00000569422 CTCFLQ8NI51 663 aaPredicted RBP10.01□□□□□ -0.81
LINC00558-201ENST00000569422 TIGD1Q96MW7 591 aa10.01□□□□□ -0.81
LINC00558-201ENST00000569422 CRNKL1Q9BZJ0 848 aaKnown RBP10.01□□□□□ -0.81
LINC00558-201ENST00000569422 HSD3B7Q9H2F3 369 aa10.01□□□□□ -0.81
LINC00558-201ENST00000569422 DCP1AQ9NPI6 582 aaPredicted RBP10.01□□□□□ -0.81
LINC00558-201ENST00000569422 MAN1B1Q9UKM7 699 aa10.01□□□□□ -0.81
LINC00558-201ENST00000569422 RTCBQ9Y3I0 505 aaKnown RBP10.01□□□□□ -0.81
LINC00558-201ENST00000569422 NEMFO60524 1076 aa10□□□□□ -0.81
LINC00558-201ENST00000569422 NLRP5P59047 1200 aa10□□□□□ -0.81
LINC00558-201ENST00000569422 FMR1Q06787 632 aaKnown RBP eCLIP10□□□□□ -0.81
LINC00558-201ENST00000569422 ARHGEF1Q92888 912 aaKnown RBP10□□□□□ -0.81
LINC00558-201ENST00000569422 MAP7D2Q96T17 732 aa10□□□□□ -0.81
LINC00558-201ENST00000569422 SAP30BPQ9UHR5 308 aaKnown RBP10□□□□□ -0.81
LINC00558-201ENST00000569422 NFE2L3Q9Y4A8 694 aa10□□□□□ -0.81
LINC00558-201ENST00000569422 ROBO1Q9Y6N7 1651 aa10□□□□□ -0.81
LINC00558-201ENST00000569422 NHSL1Q5SYE7 1610 aa10□□□□□ -0.81
LINC00558-201ENST00000569422 BAZ2BQ9UIF8 2168 aaKnown RBP10□□□□□ -0.81
LINC00558-201ENST00000569422 DOT1LQ8TEK3 1739 aa10□□□□□ -0.81
LINC00558-201ENST00000569422 ADAMTS3O15072 1205 aa10□□□□□ -0.81
LINC00558-201ENST00000569422 TOP1P11387 765 aaKnown RBP10□□□□□ -0.81
LINC00558-201ENST00000569422 MCM7P33993 719 aa10□□□□□ -0.81
LINC00558-201ENST00000569422 SYT10Q6XYQ8 523 aa10□□□□□ -0.81
LINC00558-201ENST00000569422 SRBD1Q8N5C6 995 aaKnown RBP10□□□□□ -0.81
LINC00558-201ENST00000569422 RASGRP4Q8TDF6 673 aa10□□□□□ -0.81
LINC00558-201ENST00000569422 GPKOWQ92917 476 aaPredicted RBP eCLIP10□□□□□ -0.81
LINC00558-201ENST00000569422 HOOK1Q9UJC3 728 aaKnown RBP10□□□□□ -0.81
LINC00558-201ENST00000569422 RFC4P35249 363 aa10□□□□□ -0.81
LINC00558-201ENST00000569422 GTF2F1P35269 517 aaKnown RBP eCLIP10□□□□□ -0.81
LINC00558-201ENST00000569422 TROAPQ12815 778 aa10□□□□□ -0.81
LINC00558-201ENST00000569422 NFIXQ14938 502 aa10□□□□□ -0.81
LINC00558-201ENST00000569422 SLC44A5Q8NCS7 719 aa10□□□□□ -0.81
LINC00558-201ENST00000569422 BPIFA3Q9BQP9 254 aa10□□□□□ -0.81
LINC00558-201ENST00000569422 RNF26Q9BY78 433 aaPredicted RBP10□□□□□ -0.81
LINC00558-201ENST00000569422 BLZF1Q9H2G9 400 aa10□□□□□ -0.81
LINC00558-201ENST00000569422 SAMSN1Q9NSI8 373 aaKnown RBP10□□□□□ -0.81
LINC00558-201ENST00000569422 COL14A1Q05707 1796 aaKnown RBP9.99□□□□□ -0.81
LINC00558-201ENST00000569422 RTL9Q8NET4 1388 aa9.99□□□□□ -0.81
LINC00558-201ENST00000569422 A0A087X0B3 334 aa9.99□□□□□ -0.81
LINC00558-201ENST00000569422 NRDCO43847 1150 aa9.99□□□□□ -0.81
LINC00558-201ENST00000569422 TFAP4Q01664 338 aa9.99□□□□□ -0.81
LINC00558-201ENST00000569422 GRIK5Q16478 980 aa9.99□□□□□ -0.81
LINC00558-201ENST00000569422 E4F1Q66K89 784 aaPredicted RBP9.99□□□□□ -0.81
LINC00558-201ENST00000569422 FBXO33Q7Z6M2 555 aa9.99□□□□□ -0.81
LINC00558-201ENST00000569422 CPLX3Q8WVH0 158 aa9.99□□□□□ -0.81
LINC00558-201ENST00000569422 SYMPKQ92797 1274 aaKnown RBP9.99□□□□□ -0.81
LINC00558-201ENST00000569422 CPVLQ9H3G5 476 aa9.99□□□□□ -0.81
LINC00558-201ENST00000569422 MKNK2Q9HBH9 465 aa9.99□□□□□ -0.81
LINC00558-201ENST00000569422 NARFQ9UHQ1 456 aa9.99□□□□□ -0.81
LINC00558-201ENST00000569422 STX8Q9UNK0 236 aa9.99□□□□□ -0.81
LINC00558-201ENST00000569422 CEP131Q9UPN4 1083 aa9.99□□□□□ -0.81
LINC00558-201ENST00000569422 ADKP55263 362 aaKnown RBP9.99□□□□□ -0.81
LINC00558-201ENST00000569422 BARGINQ6ZT62 677 aa9.99□□□□□ -0.81
LINC00558-201ENST00000569422 PLIN2Q99541 437 aa9.99□□□□□ -0.81
LINC00558-201ENST00000569422 BRMS1Q9HCU9 246 aa9.99□□□□□ -0.81
LINC00558-201ENST00000569422 ZNF215Q9UL58 517 aaPredicted RBP9.99□□□□□ -0.81
LINC00558-201ENST00000569422 SRPRBQ9Y5M8 271 aaKnown RBP9.99□□□□□ -0.81
LINC00558-201ENST00000569422 MYH14Q7Z406 1995 aaKnown RBP9.98□□□□□ -0.81
LINC00558-201ENST00000569422 USP17L3A6NCW0 530 aa9.98□□□□□ -0.81
LINC00558-201ENST00000569422 USP17L4A6NCW7 530 aa9.98□□□□□ -0.81
LINC00558-201ENST00000569422 IKBKBO14920 756 aa9.98□□□□□ -0.81
LINC00558-201ENST00000569422 NCBP1Q09161 790 aaKnown RBP9.98□□□□□ -0.81
LINC00558-201ENST00000569422 PTGDRQ13258 359 aa9.98□□□□□ -0.81
LINC00558-201ENST00000569422 USP17L1Q7RTZ2 530 aa9.98□□□□□ -0.81
LINC00558-201ENST00000569422 TGFBRAP1Q8WUH2 860 aa9.98□□□□□ -0.81
LINC00558-201ENST00000569422 BRIP1Q9BX63 1249 aa9.98□□□□□ -0.81
LINC00558-201ENST00000569422 NYXQ9GZU5 481 aa9.98□□□□□ -0.81
LINC00558-201ENST00000569422 OSBPL5Q9H0X9 879 aaPredicted RBP9.98□□□□□ -0.81
LINC00558-201ENST00000569422 MAPK8IP1Q9UQF2 711 aa9.98□□□□□ -0.81
LINC00558-201ENST00000569422 PAXBP1Q9Y5B6 917 aa9.98□□□□□ -0.81
LINC00558-201ENST00000569422 TAF1P21675 1872 aa9.98□□□□□ -0.81
LINC00558-201ENST00000569422 GOLGA8HP0CJ92 632 aa9.98□□□□□ -0.81
LINC00558-201ENST00000569422 RASGRP2Q7LDG7 609 aa9.98□□□□□ -0.81
LINC00558-201ENST00000569422 MAPKAPK5Q8IW41 473 aa9.98□□□□□ -0.81
LINC00558-201ENST00000569422 STAG2Q8N3U4 1231 aa9.98□□□□□ -0.81
LINC00558-201ENST00000569422 CCDC150Q8NCX0 1101 aa9.98□□□□□ -0.81
LINC00558-201ENST00000569422 RASSF8Q8NHQ8 419 aa9.98□□□□□ -0.81
LINC00558-201ENST00000569422 KIF18AQ8NI77 898 aa9.98□□□□□ -0.81
LINC00558-201ENST00000569422 PPP1R13BQ96KQ4 1090 aa9.98□□□□□ -0.81
LINC00558-201ENST00000569422 IMPACTQ9P2X3 320 aa9.98□□□□□ -0.81
LINC00558-201ENST00000569422 UBAP1LF5GYI3 381 aa9.98□□□□□ -0.81
LINC00558-201ENST00000569422 RPS6KA4O75676 772 aa9.98□□□□□ -0.81
LINC00558-201ENST00000569422 MDM2Q00987 491 aaPredicted RBP9.98□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 42.3 ms