RNA–Protein interactions for RNA: ENST00000569117.1

CDH3-210, Transcript of cadherin 3, humanhuman

TSL 5

Gene CDH3, Length 576 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3-210ENST00000569117 MAP1SQ66K74 1059 aaPredicted RBP12.34□□□□□ -0.43
CDH3-210ENST00000569117 TATDN1Q6P1N9 297 aa12.34□□□□□ -0.43
CDH3-210ENST00000569117 RALYLQ86SE5 291 aaKnown RBP12.34□□□□□ -0.43
CDH3-210ENST00000569117 MB21D2Q8IYB1 491 aaPredicted RBP12.34□□□□□ -0.43
CDH3-210ENST00000569117 NCOA7Q8NI08 942 aa12.34□□□□□ -0.43
CDH3-210ENST00000569117 KRT23Q9C075 422 aa12.34□□□□□ -0.43
CDH3-210ENST00000569117 FAM196BA6NMK8 535 aa12.33□□□□□ -0.44
CDH3-210ENST00000569117 B4E1Z4 1266 aa12.33□□□□□ -0.44
CDH3-210ENST00000569117 HMGB1P09429 215 aaKnown RBP12.33□□□□□ -0.44
CDH3-210ENST00000569117 PSMA5P28066 241 aa12.33□□□□□ -0.44
CDH3-210ENST00000569117 USP48Q86UV5 1035 aa12.33□□□□□ -0.44
CDH3-210ENST00000569117 STK11IPQ8N1F8 1099 aa12.33□□□□□ -0.44
CDH3-210ENST00000569117 ESR2Q92731 530 aa12.33□□□□□ -0.44
CDH3-210ENST00000569117 JAKMIP1Q96N16 626 aaKnown RBP12.33□□□□□ -0.44
CDH3-210ENST00000569117 NEK1Q96PY6 1258 aa12.33□□□□□ -0.44
CDH3-210ENST00000569117 XPO5Q9HAV4 1204 aaKnown RBP eCLIP12.33□□□□□ -0.44
CDH3-210ENST00000569117 MKNK2Q9HBH9 465 aa12.33□□□□□ -0.44
CDH3-210ENST00000569117 BMP2KQ9NSY1 1161 aaPredicted RBP12.33□□□□□ -0.44
CDH3-210ENST00000569117 WDR19Q8NEZ3 1342 aa12.33□□□□□ -0.44
CDH3-210ENST00000569117 C2orf72A6NCS6 295 aa12.32□□□□□ -0.44
CDH3-210ENST00000569117 PRDM1O75626 825 aa12.32□□□□□ -0.44
CDH3-210ENST00000569117 SLURP2P0DP57 97 aa12.32□□□□□ -0.44
CDH3-210ENST00000569117 CASTP20810 708 aaKnown RBP12.32□□□□□ -0.44
CDH3-210ENST00000569117 NF2P35240 595 aa12.32□□□□□ -0.44
CDH3-210ENST00000569117 RRP12Q5JTH9 1297 aaKnown RBP12.32□□□□□ -0.44
CDH3-210ENST00000569117 PRAMEF18Q5VWM3 479 aa12.32□□□□□ -0.44
CDH3-210ENST00000569117 ZNF784Q8NCA9 323 aaPredicted RBP12.32□□□□□ -0.44
CDH3-210ENST00000569117 CCDC17Q96LX7 622 aa12.32□□□□□ -0.44
CDH3-210ENST00000569117 ZNF341Q9BYN7 854 aa12.32□□□□□ -0.44
CDH3-210ENST00000569117 ZSWIM6Q9HCJ5 1215 aa12.32□□□□□ -0.44
CDH3-210ENST00000569117 INCENPQ9NQS7 918 aa12.32□□□□□ -0.44
CDH3-210ENST00000569117 TOMM22Q9NS69 142 aa12.32□□□□□ -0.44
CDH3-210ENST00000569117 MYH4Q9Y623 1939 aa12.32□□□□□ -0.44
CDH3-210ENST00000569117 PHIPQ8WWQ0 1821 aa12.32□□□□□ -0.44
CDH3-210ENST00000569117 RANBP6O60518 1105 aaKnown RBP12.31□□□□□ -0.44
CDH3-210ENST00000569117 KDM4AO75164 1064 aa12.31□□□□□ -0.44
CDH3-210ENST00000569117 RPS6KB1P23443 525 aa12.31□□□□□ -0.44
CDH3-210ENST00000569117 MCM5P33992 734 aa12.31□□□□□ -0.44
CDH3-210ENST00000569117 ANTXR2P58335 489 aa12.31□□□□□ -0.44
CDH3-210ENST00000569117 COL9A3Q14050 684 aaPredicted RBP12.31□□□□□ -0.44
CDH3-210ENST00000569117 TTLL12Q14166 644 aaPredicted RBP12.31□□□□□ -0.44
CDH3-210ENST00000569117 RABEP1Q15276 862 aa12.31□□□□□ -0.44
CDH3-210ENST00000569117 BLOC1S2Q6QNY1 142 aa12.31□□□□□ -0.44
CDH3-210ENST00000569117 DLK2Q6UY11 383 aa12.31□□□□□ -0.44
CDH3-210ENST00000569117 MIGA2Q7L4E1 593 aa12.31□□□□□ -0.44
CDH3-210ENST00000569117 NKX2-3Q8TAU0 364 aa12.31□□□□□ -0.44
CDH3-210ENST00000569117 MTA3Q9BTC8 594 aa12.31□□□□□ -0.44
CDH3-210ENST00000569117 ZNF112Q9UJU3 913 aa12.31□□□□□ -0.44
CDH3-210ENST00000569117 TSPY2A6NKD2 308 aa12.3□□□□□ -0.44
CDH3-210ENST00000569117 PHF20L1A8MW92 1017 aa12.3□□□□□ -0.44
CDH3-210ENST00000569117 TRAF5O00463 557 aa12.3□□□□□ -0.44
CDH3-210ENST00000569117 ITGBL1O95965 494 aaPredicted RBP12.3□□□□□ -0.44
CDH3-210ENST00000569117 AKR1B1P15121 316 aa12.3□□□□□ -0.44
CDH3-210ENST00000569117 CERKLQ49MI3 558 aaPredicted RBP12.3□□□□□ -0.44
CDH3-210ENST00000569117 RUFY3Q7L099 469 aa12.3□□□□□ -0.44
CDH3-210ENST00000569117 CYB5R4Q7L1T6 521 aa12.3□□□□□ -0.44
CDH3-210ENST00000569117 DHX32Q7L7V1 743 aaKnown RBP12.3□□□□□ -0.44
CDH3-210ENST00000569117 ZNF444Q8N0Y2 327 aaPredicted RBP12.3□□□□□ -0.44
CDH3-210ENST00000569117 DDX55Q8NHQ9 600 aaKnown RBP eCLIP12.3□□□□□ -0.44
CDH3-210ENST00000569117 NEDD1Q8NHV4 660 aa12.3□□□□□ -0.44
CDH3-210ENST00000569117 RBM46Q8TBY0 533 aaKnown RBP12.3□□□□□ -0.44
CDH3-210ENST00000569117 KLRG1Q96E93 195 aa12.3□□□□□ -0.44
CDH3-210ENST00000569117 UPF3BQ9BZI7 483 aaKnown RBP12.3□□□□□ -0.44
CDH3-210ENST00000569117 ZSWIM5Q9P217 1185 aa12.3□□□□□ -0.44
CDH3-210ENST00000569117 CYP46A1Q9Y6A2 500 aa12.3□□□□□ -0.44
CDH3-210ENST00000569117 PTPRFP10586 1907 aa12.29□□□□□ -0.44
CDH3-210ENST00000569117 IGKV6D-41A0A0C4DH26 115 aa12.29□□□□□ -0.44
CDH3-210ENST00000569117 PRC1O43663 620 aa12.29□□□□□ -0.44
CDH3-210ENST00000569117 PPP1R12BO60237 982 aaPredicted RBP12.29□□□□□ -0.44
CDH3-210ENST00000569117 CTNND1O60716 968 aaKnown RBP12.29□□□□□ -0.44
CDH3-210ENST00000569117 TSPY3P0CV98 308 aa12.29□□□□□ -0.44
CDH3-210ENST00000569117 TSPY8P0CW00 308 aa12.29□□□□□ -0.44
CDH3-210ENST00000569117 CPA1P15085 419 aa12.29□□□□□ -0.44
CDH3-210ENST00000569117 CAP2P40123 477 aa12.29□□□□□ -0.44
CDH3-210ENST00000569117 FKBP1BP68106 108 aa12.29□□□□□ -0.44
CDH3-210ENST00000569117 TFAP4Q01664 338 aa12.29□□□□□ -0.44
CDH3-210ENST00000569117 RRP1BQ14684 758 aaKnown RBP12.29□□□□□ -0.44
CDH3-210ENST00000569117 MAP3K11Q16584 847 aa12.29□□□□□ -0.44
CDH3-210ENST00000569117 FAM47AQ5JRC9 791 aa12.29□□□□□ -0.44
CDH3-210ENST00000569117 NOL9Q5SY16 702 aaKnown RBP12.29□□□□□ -0.44
CDH3-210ENST00000569117 TMEM179Q6ZVK1 233 aa12.29□□□□□ -0.44
CDH3-210ENST00000569117 IQCA1Q86XH1 822 aa12.29□□□□□ -0.44
CDH3-210ENST00000569117 FBXL16Q8N461 479 aa12.29□□□□□ -0.44
CDH3-210ENST00000569117 SMC1BQ8NDV3 1235 aa12.29□□□□□ -0.44
CDH3-210ENST00000569117 TMEM87BQ96K49 555 aa12.29□□□□□ -0.44
CDH3-210ENST00000569117 TTC14Q96N46 770 aa12.29□□□□□ -0.44
CDH3-210ENST00000569117 WRNIP1Q96S55 665 aa12.29□□□□□ -0.44
CDH3-210ENST00000569117 GNL3Q9BVP2 549 aaKnown RBP eCLIP12.29□□□□□ -0.44
CDH3-210ENST00000569117 AGXT2Q9BYV1 514 aa12.29□□□□□ -0.44
CDH3-210ENST00000569117 GINM1Q9NU53 330 aa12.29□□□□□ -0.44
CDH3-210ENST00000569117 TCP11L1Q9NUJ3 509 aa12.29□□□□□ -0.44
CDH3-210ENST00000569117 ZBTB21Q9ULJ3 1066 aa12.29□□□□□ -0.44
CDH3-210ENST00000569117 PASKQ96RG2 1323 aa12.29□□□□□ -0.44
CDH3-210ENST00000569117 TOMM70O94826 608 aa12.28□□□□□ -0.44
CDH3-210ENST00000569117 GDF11O95390 407 aa12.28□□□□□ -0.44
CDH3-210ENST00000569117 ASNSP08243 561 aa12.28□□□□□ -0.44
CDH3-210ENST00000569117 NOVP48745 357 aa12.28□□□□□ -0.44
CDH3-210ENST00000569117 EXOSC10Q01780 885 aaKnown RBP12.28□□□□□ -0.44
CDH3-210ENST00000569117 SART3Q15020 963 aaKnown RBP12.28□□□□□ -0.44
CDH3-210ENST00000569117 ABCB5Q2M3G0 1257 aa12.28□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms