RNA–Protein interactions for RNA: ENST00000568452.6

CLN3-233, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,616 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-233ENST00000568452 GPR162Q16538 588 aa22.09■■□□□ 1.13
CLN3-233ENST00000568452 ARHGAP27Q6ZUM4 889 aa22.09■■□□□ 1.13
CLN3-233ENST00000568452 PHKBQ93100 1093 aa22.09■■□□□ 1.13
CLN3-233ENST00000568452 ZBED3Q96IU2 234 aaPredicted RBP22.09■■□□□ 1.13
CLN3-233ENST00000568452 ALG1Q9BT22 464 aa22.09■■□□□ 1.13
CLN3-233ENST00000568452 STX8Q9UNK0 236 aa22.09■■□□□ 1.13
CLN3-233ENST00000568452 DDTLA6NHG4 134 aaPredicted RBP22.09■■□□□ 1.13
CLN3-233ENST00000568452 LMNB1P20700 586 aa22.09■■□□□ 1.13
CLN3-233ENST00000568452 CSPP1Q1MSJ5 1256 aa22.09■■□□□ 1.13
CLN3-233ENST00000568452 FERMT3Q86UX7 667 aa22.09■■□□□ 1.13
CLN3-233ENST00000568452 FBXO18Q8NFZ0 1043 aa22.09■■□□□ 1.13
CLN3-233ENST00000568452 FAM151AQ8WW52 585 aa22.09■■□□□ 1.13
CLN3-233ENST00000568452 RNF26Q9BY78 433 aaPredicted RBP22.09■■□□□ 1.13
CLN3-233ENST00000568452 MYOZ2Q9NPC6 264 aa22.09■■□□□ 1.13
CLN3-233ENST00000568452 TRAK2O60296 914 aa22.08■■□□□ 1.13
CLN3-233ENST00000568452 DEXIO95424 95 aa22.08■■□□□ 1.13
CLN3-233ENST00000568452 TOP1P11387 765 aaKnown RBP22.08■■□□□ 1.13
CLN3-233ENST00000568452 NOVP48745 357 aa22.08■■□□□ 1.13
CLN3-233ENST00000568452 PRELPP51888 382 aa22.08■■□□□ 1.13
CLN3-233ENST00000568452 AKAP17AQ02040 695 aaKnown RBP22.08■■□□□ 1.13
CLN3-233ENST00000568452 RESTQ13127 1097 aa22.08■■□□□ 1.13
CLN3-233ENST00000568452 SH3BP5LQ7L8J4 393 aa22.08■■□□□ 1.13
CLN3-233ENST00000568452 METTL16Q86W50 562 aaKnown RBP22.08■■□□□ 1.13
CLN3-233ENST00000568452 CLRN2A0PK11 232 aa22.07■■□□□ 1.12
CLN3-233ENST00000568452 YBX3P16989 372 aaKnown RBP eCLIP22.07■■□□□ 1.12
CLN3-233ENST00000568452 GNAQP50148 359 aa22.07■■□□□ 1.12
CLN3-233ENST00000568452 FOSBP53539 338 aa22.07■■□□□ 1.12
CLN3-233ENST00000568452 TRIM29Q14134 588 aa22.07■■□□□ 1.12
CLN3-233ENST00000568452 FOXD4L6Q3SYB3 417 aaPredicted RBP22.07■■□□□ 1.12
CLN3-233ENST00000568452 FOXD4L3Q6VB84 417 aaPredicted RBP22.07■■□□□ 1.12
CLN3-233ENST00000568452 TMTC3Q6ZXV5 915 aa22.07■■□□□ 1.12
CLN3-233ENST00000568452 NBPF11Q86T75 865 aa22.07■■□□□ 1.12
CLN3-233ENST00000568452 TMEM47Q9BQJ4 181 aa22.07■■□□□ 1.12
CLN3-233ENST00000568452 LMBRD1Q9NUN5 540 aa22.07■■□□□ 1.12
CLN3-233ENST00000568452 MYH8P13535 1937 aa22.07■■□□□ 1.12
CLN3-233ENST00000568452 TCP10L2B9ZVM9 353 aa22.06■■□□□ 1.12
CLN3-233ENST00000568452 AKR1B1P15121 316 aa22.06■■□□□ 1.12
CLN3-233ENST00000568452 FAM83AQ86UY5 434 aa22.06■■□□□ 1.12
CLN3-233ENST00000568452 CEP95Q96GE4 821 aa22.06■■□□□ 1.12
CLN3-233ENST00000568452 GJA3Q9Y6H8 435 aa22.06■■□□□ 1.12
CLN3-233ENST00000568452 IGKV6D-41A0A0C4DH26 115 aa22.06■■□□□ 1.12
CLN3-233ENST00000568452 PRPF40AO75400 957 aaKnown RBP22.06■■□□□ 1.12
CLN3-233ENST00000568452 GMPSP49915 693 aaPredicted RBP22.06■■□□□ 1.12
CLN3-233ENST00000568452 KRT85P78386 507 aa22.06■■□□□ 1.12
CLN3-233ENST00000568452 GRM4Q14833 912 aa22.06■■□□□ 1.12
CLN3-233ENST00000568452 TMEM87AQ8NBN3 555 aa22.06■■□□□ 1.12
CLN3-233ENST00000568452 MTMR4Q9NYA4 1195 aa22.06■■□□□ 1.12
CLN3-233ENST00000568452 HERC5Q9UII4 1024 aaKnown RBP22.06■■□□□ 1.12
CLN3-233ENST00000568452 WNT10BO00744 389 aa22.05■■□□□ 1.12
CLN3-233ENST00000568452 PRPF3O43395 683 aaKnown RBP22.05■■□□□ 1.12
CLN3-233ENST00000568452 NCLP19338 710 aaKnown RBP22.05■■□□□ 1.12
CLN3-233ENST00000568452 GUCY1B3Q02153 619 aa22.05■■□□□ 1.12
CLN3-233ENST00000568452 CHAMP1Q96JM3 812 aa22.05■■□□□ 1.12
CLN3-233ENST00000568452 CSRNP1Q96S65 589 aa22.05■■□□□ 1.12
CLN3-233ENST00000568452 GNL3Q9BVP2 549 aaKnown RBP eCLIP22.05■■□□□ 1.12
CLN3-233ENST00000568452 DNAJC18Q9H819 358 aa22.05■■□□□ 1.12
CLN3-233ENST00000568452 VEZTQ9HBM0 779 aa22.05■■□□□ 1.12
CLN3-233ENST00000568452 RBM27Q9P2N5 1060 aaKnown RBP22.05■■□□□ 1.12
CLN3-233ENST00000568452 GOLGB1Q14789 3259 aaKnown RBP22.05■■□□□ 1.12
CLN3-233ENST00000568452 SIPA1L1O43166 1804 aa22.04■■□□□ 1.12
CLN3-233ENST00000568452 TNNI2P48788 182 aa22.04■■□□□ 1.12
CLN3-233ENST00000568452 DNM1Q05193 864 aaKnown RBP22.04■■□□□ 1.12
CLN3-233ENST00000568452 FUT2Q10981 343 aa22.04■■□□□ 1.12
CLN3-233ENST00000568452 CERKLQ49MI3 558 aaPredicted RBP22.04■■□□□ 1.12
CLN3-233ENST00000568452 TATDN1Q6P1N9 297 aa22.04■■□□□ 1.12
CLN3-233ENST00000568452 CNPY2Q9Y2B0 182 aa22.04■■□□□ 1.12
CLN3-233ENST00000568452 MPHOSPH10O00566 681 aaKnown RBP22.03■■□□□ 1.12
CLN3-233ENST00000568452 PLEKHA8P1O95397 391 aa22.03■■□□□ 1.12
CLN3-233ENST00000568452 TTLL1O95922 423 aa22.03■■□□□ 1.12
CLN3-233ENST00000568452 ATL3Q6DD88 541 aa22.03■■□□□ 1.12
CLN3-233ENST00000568452 CCDC82Q8N4S0 544 aa22.03■■□□□ 1.12
CLN3-233ENST00000568452 LZTS2Q9BRK4 669 aa22.03■■□□□ 1.12
CLN3-233ENST00000568452 XBP1P17861 261 aa22.02■■□□□ 1.12
CLN3-233ENST00000568452 KRT40Q6A162 431 aa22.02■■□□□ 1.12
CLN3-233ENST00000568452 BRAPQ7Z569 592 aa22.02■■□□□ 1.12
CLN3-233ENST00000568452 MICALL2Q8IY33 904 aa22.02■■□□□ 1.12
CLN3-233ENST00000568452 CMTR1Q8N1G2 835 aaKnown RBP22.02■■□□□ 1.12
CLN3-233ENST00000568452 CNOT7Q9UIV1 285 aaKnown RBP22.02■■□□□ 1.12
CLN3-233ENST00000568452 CNTNAP1P78357 1384 aa22.02■■□□□ 1.12
CLN3-233ENST00000568452 DICER1Q9UPY3 1922 aaKnown RBP22.02■■□□□ 1.12
CLN3-233ENST00000568452 GRIN3BO60391 1043 aa22.02■■□□□ 1.11
CLN3-233ENST00000568452 TNFAIP1Q13829 316 aa22.02■■□□□ 1.11
CLN3-233ENST00000568452 NBPF9Q3BBW0 867 aa22.02■■□□□ 1.11
CLN3-233ENST00000568452 AIFM3Q96NN9 605 aa22.02■■□□□ 1.11
CLN3-233ENST00000568452 SCAND2PQ9GZW5 306 aaPredicted RBP22.02■■□□□ 1.11
CLN3-233ENST00000568452 DDX49Q9Y6V7 483 aaKnown RBP22.02■■□□□ 1.11
CLN3-233ENST00000568452 ZNF541Q9H0D2 1346 aa22.02■■□□□ 1.11
CLN3-233ENST00000568452 H7C1D1 291 aa22.01■■□□□ 1.11
CLN3-233ENST00000568452 KLHL40Q2TBA0 621 aa22.01■■□□□ 1.11
CLN3-233ENST00000568452 OTUD7BQ6GQQ9 843 aa22.01■■□□□ 1.11
CLN3-233ENST00000568452 TMEM179Q6ZVK1 233 aa22.01■■□□□ 1.11
CLN3-233ENST00000568452 USP48Q86UV5 1035 aa22.01■■□□□ 1.11
CLN3-233ENST00000568452 SRBD1Q8N5C6 995 aaKnown RBP22.01■■□□□ 1.11
CLN3-233ENST00000568452 CNTNAP5Q8WYK1 1306 aa22.01■■□□□ 1.11
CLN3-233ENST00000568452 ZNF396Q96N95 335 aaPredicted RBP22.01■■□□□ 1.11
CLN3-233ENST00000568452 CFAP45Q9UL16 551 aa22.01■■□□□ 1.11
CLN3-233ENST00000568452 GREB1LQ9C091 1923 aaPredicted RBP22■■□□□ 1.11
CLN3-233ENST00000568452 MBD3O95983 291 aa22■■□□□ 1.11
CLN3-233ENST00000568452 SAFBQ15424 915 aaKnown RBP eCLIP22■■□□□ 1.11
CLN3-233ENST00000568452 GPC2Q8N158 579 aa22■■□□□ 1.11
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms