RNA–Protein interactions for RNA: ENST00000568443.2

CLN3-232, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 969 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-232ENST00000568443 USP17L20D6RJB6 530 aa27.07■■□□□ 1.92
CLN3-232ENST00000568443 CHGBP05060 677 aa27.07■■□□□ 1.92
CLN3-232ENST00000568443 USP17L24Q0WX57 530 aa27.07■■□□□ 1.92
CLN3-232ENST00000568443 SEPT2Q15019 361 aa27.07■■□□□ 1.92
CLN3-232ENST00000568443 AMOTL1Q8IY63 956 aa27.07■■□□□ 1.92
CLN3-232ENST00000568443 GTF3C2Q8WUA4 911 aaPredicted RBP27.07■■□□□ 1.92
CLN3-232ENST00000568443 UNC93B1Q9H1C4 597 aa27.07■■□□□ 1.92
CLN3-232ENST00000568443 RBPJLQ9UBG7 517 aa27.07■■□□□ 1.92
CLN3-232ENST00000568443 SWAP70Q9UH65 585 aa27.07■■□□□ 1.92
CLN3-232ENST00000568443 PCDHB15Q9Y5E8 787 aa27.07■■□□□ 1.92
CLN3-232ENST00000568443 INHAP05111 366 aa27.06■■□□□ 1.92
CLN3-232ENST00000568443 GJA8P48165 433 aa27.06■■□□□ 1.92
CLN3-232ENST00000568443 RRP1P56182 461 aaKnown RBP27.06■■□□□ 1.92
CLN3-232ENST00000568443 CCAR1Q8IX12 1150 aaKnown RBP27.06■■□□□ 1.92
CLN3-232ENST00000568443 TXNRD2Q9NNW7 524 aa27.06■■□□□ 1.92
CLN3-232ENST00000568443 PEX10O60683 326 aa27.05■■□□□ 1.92
CLN3-232ENST00000568443 GUCY1A2P33402 732 aa27.05■■□□□ 1.92
CLN3-232ENST00000568443 DYNLL2Q96FJ2 89 aa27.05■■□□□ 1.92
CLN3-232ENST00000568443 PAGR1Q9BTK6 254 aa27.05■■□□□ 1.92
CLN3-232ENST00000568443 GJD2Q9UKL4 321 aa27.05■■□□□ 1.92
CLN3-232ENST00000568443 SLC4A4Q9Y6R1 1079 aa27.05■■□□□ 1.92
CLN3-232ENST00000568443 MYH7P12883 1935 aa27.05■■□□□ 1.92
CLN3-232ENST00000568443 SLC44A5Q8NCS7 719 aa27.04■■□□□ 1.92
CLN3-232ENST00000568443 SHISA4Q96DD7 197 aa27.04■■□□□ 1.92
CLN3-232ENST00000568443 PUS7LQ9H0K6 701 aaKnown RBP27.04■■□□□ 1.92
CLN3-232ENST00000568443 USP17L12C9JPN9 530 aa27.03■■□□□ 1.92
CLN3-232ENST00000568443 USP17L21D6R901 530 aa27.03■■□□□ 1.92
CLN3-232ENST00000568443 VCAM1P19320 739 aa27.03■■□□□ 1.92
CLN3-232ENST00000568443 ERVK-9P63128 1117 aa27.03■■□□□ 1.92
CLN3-232ENST00000568443 ERVK-24P63145 666 aa27.03■■□□□ 1.92
CLN3-232ENST00000568443 C12orf60Q5U649 245 aa27.03■■□□□ 1.92
CLN3-232ENST00000568443 TSHZ3Q63HK5 1081 aa27.03■■□□□ 1.92
CLN3-232ENST00000568443 CATSPERGQ6ZRH7 1159 aa27.03■■□□□ 1.92
CLN3-232ENST00000568443 KBTBD3Q8NAB2 608 aa27.03■■□□□ 1.92
CLN3-232ENST00000568443 U2AF1L4Q8WU68 220 aaKnown RBP27.03■■□□□ 1.92
CLN3-232ENST00000568443 MAPK4P31152 587 aa27.02■■□□□ 1.92
CLN3-232ENST00000568443 Q3C1V9 767 aa27.02■■□□□ 1.92
CLN3-232ENST00000568443 TMEM179Q6ZVK1 233 aa27.02■■□□□ 1.92
CLN3-232ENST00000568443 BAZ2AQ9UIF9 1905 aaKnown RBP27.02■■□□□ 1.92
CLN3-232ENST00000568443 CYP2D7A0A087X1C5 515 aa27.01■■□□□ 1.91
CLN3-232ENST00000568443 SGPL1O95470 568 aa27.01■■□□□ 1.91
CLN3-232ENST00000568443 YTHDC1Q96MU7 727 aaKnown RBP27.01■■□□□ 1.91
CLN3-232ENST00000568443 NUDT12Q9BQG2 462 aa27.01■■□□□ 1.91
CLN3-232ENST00000568443 RABGAP1Q9Y3P9 1069 aa27.01■■□□□ 1.91
CLN3-232ENST00000568443 HMGCRP04035 888 aa27■■□□□ 1.91
CLN3-232ENST00000568443 CDK8P49336 464 aa27■■□□□ 1.91
CLN3-232ENST00000568443 CCDC17Q96LX7 622 aa27■■□□□ 1.91
CLN3-232ENST00000568443 RPAP3Q9H6T3 665 aaPredicted RBP27■■□□□ 1.91
CLN3-232ENST00000568443 A0A1W2PRG0 241 aa26.99■■□□□ 1.91
CLN3-232ENST00000568443 POTEEQ6S8J3 1075 aa26.99■■□□□ 1.91
CLN3-232ENST00000568443 DEFB118Q96PH6 123 aa26.99■■□□□ 1.91
CLN3-232ENST00000568443 STRBPQ96SI9 672 aaKnown RBP26.99■■□□□ 1.91
CLN3-232ENST00000568443 PORCNQ9H237 461 aa26.99■■□□□ 1.91
CLN3-232ENST00000568443 CWC22Q9HCG8 908 aaKnown RBP26.99■■□□□ 1.91
CLN3-232ENST00000568443 TTC41PQ6P2S7 1318 aa26.98■■□□□ 1.91
CLN3-232ENST00000568443 ERC2O15083 957 aa26.98■■□□□ 1.91
CLN3-232ENST00000568443 RNF113AO15541 343 aaKnown RBP26.98■■□□□ 1.91
CLN3-232ENST00000568443 TFRCP02786 760 aaKnown RBP26.98■■□□□ 1.91
CLN3-232ENST00000568443 ZFYP08048 801 aaPredicted RBP26.98■■□□□ 1.91
CLN3-232ENST00000568443 CYP2B6P20813 491 aa26.98■■□□□ 1.91
CLN3-232ENST00000568443 CCNA1P78396 465 aa26.98■■□□□ 1.91
CLN3-232ENST00000568443 CTR9Q6PD62 1173 aa26.98■■□□□ 1.91
CLN3-232ENST00000568443 C16orf86Q6ZW13 317 aa26.98■■□□□ 1.91
CLN3-232ENST00000568443 SOCS4Q8WXH5 440 aa26.98■■□□□ 1.91
CLN3-232ENST00000568443 GCC1Q96CN9 775 aa26.98■■□□□ 1.91
CLN3-232ENST00000568443 MYH8P13535 1937 aa26.98■■□□□ 1.91
CLN3-232ENST00000568443 SMIM22K7EJ46 135 aa26.97■■□□□ 1.91
CLN3-232ENST00000568443 AKR1B1P15121 316 aa26.97■■□□□ 1.91
CLN3-232ENST00000568443 CAPN2P17655 700 aa26.97■■□□□ 1.91
CLN3-232ENST00000568443 LRRFIP1Q32MZ4 808 aaKnown RBP26.97■■□□□ 1.91
CLN3-232ENST00000568443 GPR142Q7Z601 462 aa26.97■■□□□ 1.91
CLN3-232ENST00000568443 PLEKHH3Q7Z736 793 aa26.97■■□□□ 1.91
CLN3-232ENST00000568443 APPBP2Q92624 585 aa26.97■■□□□ 1.91
CLN3-232ENST00000568443 CRBNQ96SW2 442 aa26.97■■□□□ 1.91
CLN3-232ENST00000568443 ARHGEF10LQ9HCE6 1279 aa26.97■■□□□ 1.91
CLN3-232ENST00000568443 PAK6Q9NQU5 681 aaPredicted RBP26.97■■□□□ 1.91
CLN3-232ENST00000568443 ZBTB47Q9UFB7 747 aaPredicted RBP26.97■■□□□ 1.91
CLN3-232ENST00000568443 LBX2Q6XYB7 198 aa26.96■■□□□ 1.91
CLN3-232ENST00000568443 OSBP2Q969R2 916 aa26.96■■□□□ 1.91
CLN3-232ENST00000568443 SH2D4AQ9H788 454 aa26.96■■□□□ 1.91
CLN3-232ENST00000568443 ARPP21Q9UBL0 812 aaPredicted RBP26.96■■□□□ 1.91
CLN3-232ENST00000568443 CNMDO75829 334 aa26.95■■□□□ 1.9
CLN3-232ENST00000568443 GLRX3O76003 335 aaKnown RBP26.95■■□□□ 1.9
CLN3-232ENST00000568443 XRCC5P13010 732 aaKnown RBP26.95■■□□□ 1.9
CLN3-232ENST00000568443 ICA1Q05084 483 aa26.95■■□□□ 1.9
CLN3-232ENST00000568443 COG2Q14746 738 aa26.95■■□□□ 1.9
CLN3-232ENST00000568443 XRN2Q9H0D6 950 aaKnown RBP eCLIP26.95■■□□□ 1.9
CLN3-232ENST00000568443 HOXC10Q9NYD6 342 aa26.95■■□□□ 1.9
CLN3-232ENST00000568443 PLXNB2O15031 1838 aa26.95■■□□□ 1.9
CLN3-232ENST00000568443 RPTORQ8N122 1335 aa26.94■■□□□ 1.9
CLN3-232ENST00000568443 FARP2O94887 1054 aaPredicted RBP26.94■■□□□ 1.9
CLN3-232ENST00000568443 SLC34A2O95436 690 aa26.94■■□□□ 1.9
CLN3-232ENST00000568443 GIMAP6Q6P9H5 292 aa26.94■■□□□ 1.9
CLN3-232ENST00000568443 UBE2Q1Q7Z7E8 422 aa26.94■■□□□ 1.9
CLN3-232ENST00000568443 SIAH1Q8IUQ4 282 aa26.94■■□□□ 1.9
CLN3-232ENST00000568443 TRMT44Q8IYL2 757 aaKnown RBP26.94■■□□□ 1.9
CLN3-232ENST00000568443 DPF3Q92784 378 aa26.94■■□□□ 1.9
CLN3-232ENST00000568443 HTATIP2Q9BUP3 242 aa26.94■■□□□ 1.9
CLN3-232ENST00000568443 TANGO6Q9C0B7 1094 aa26.94■■□□□ 1.9
CLN3-232ENST00000568443 HMX1Q9NP08 348 aaPredicted RBP26.94■■□□□ 1.9
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms