RNA–Protein interactions for RNA: ENST00000568291.2

SF3B3-211, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 2

Gene SF3B3, Length 1,067 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-211ENST00000568291 PEX10O60683 326 aa11.44□□□□□ -0.58
SF3B3-211ENST00000568291 ELNP15502 786 aa11.44□□□□□ -0.58
SF3B3-211ENST00000568291 SHMT1P34896 483 aa11.44□□□□□ -0.58
SF3B3-211ENST00000568291 FLT3LGP49771 235 aa11.44□□□□□ -0.58
SF3B3-211ENST00000568291 PDE1AP54750 535 aa11.44□□□□□ -0.58
SF3B3-211ENST00000568291 HMGCS2P54868 508 aa11.44□□□□□ -0.58
SF3B3-211ENST00000568291 ZYXQ15942 572 aaKnown RBP11.44□□□□□ -0.58
SF3B3-211ENST00000568291 POTEHQ6S545 545 aa11.44□□□□□ -0.58
SF3B3-211ENST00000568291 UBE2Q1Q7Z7E8 422 aa11.44□□□□□ -0.58
SF3B3-211ENST00000568291 TTC6Q86TZ1 520 aa11.44□□□□□ -0.58
SF3B3-211ENST00000568291 METTL16Q86W50 562 aaKnown RBP11.44□□□□□ -0.58
SF3B3-211ENST00000568291 SMC5Q8IY18 1101 aa11.44□□□□□ -0.58
SF3B3-211ENST00000568291 U2AF1L4Q8WU68 220 aaKnown RBP11.44□□□□□ -0.58
SF3B3-211ENST00000568291 DPF3Q92784 378 aa11.44□□□□□ -0.58
SF3B3-211ENST00000568291 STRBPQ96SI9 672 aaKnown RBP11.44□□□□□ -0.58
SF3B3-211ENST00000568291 FSD1Q9BTV5 496 aa11.44□□□□□ -0.58
SF3B3-211ENST00000568291 SERPINB13Q9UIV8 391 aa11.44□□□□□ -0.58
SF3B3-211ENST00000568291 DDX60LQ5H9U9 1706 aaKnown RBP11.43□□□□□ -0.58
SF3B3-211ENST00000568291 USP17L5A8MUK1 530 aa11.43□□□□□ -0.58
SF3B3-211ENST00000568291 MPHOSPH10O00566 681 aaKnown RBP11.43□□□□□ -0.58
SF3B3-211ENST00000568291 ERC2O15083 957 aa11.43□□□□□ -0.58
SF3B3-211ENST00000568291 IGSF3O75054 1194 aa11.43□□□□□ -0.58
SF3B3-211ENST00000568291 GLRX3O76003 335 aaKnown RBP11.43□□□□□ -0.58
SF3B3-211ENST00000568291 INHAP05111 366 aa11.43□□□□□ -0.58
SF3B3-211ENST00000568291 NUCB1Q02818 461 aa11.43□□□□□ -0.58
SF3B3-211ENST00000568291 MTMR2Q13614 643 aa11.43□□□□□ -0.58
SF3B3-211ENST00000568291 RAB3GAP1Q15042 981 aa11.43□□□□□ -0.58
SF3B3-211ENST00000568291 CERKLQ49MI3 558 aaPredicted RBP11.43□□□□□ -0.58
SF3B3-211ENST00000568291 ZSCAN25Q6NSZ9 544 aa11.43□□□□□ -0.58
SF3B3-211ENST00000568291 TATDN1Q6P1N9 297 aa11.43□□□□□ -0.58
SF3B3-211ENST00000568291 CCDC129Q6ZRS4 1044 aa11.43□□□□□ -0.58
SF3B3-211ENST00000568291 CHD1LQ86WJ1 897 aa11.43□□□□□ -0.58
SF3B3-211ENST00000568291 CLEC10AQ8IUN9 316 aa11.43□□□□□ -0.58
SF3B3-211ENST00000568291 ZNF280CQ8ND82 737 aa11.43□□□□□ -0.58
SF3B3-211ENST00000568291 ACER1Q8TDN7 264 aa11.43□□□□□ -0.58
SF3B3-211ENST00000568291 PNMA3Q9UL41 463 aa11.43□□□□□ -0.58
SF3B3-211ENST00000568291 TAOK2Q9UL54 1235 aa11.43□□□□□ -0.58
SF3B3-211ENST00000568291 ZBTB21Q9ULJ3 1066 aa11.43□□□□□ -0.58
SF3B3-211ENST00000568291 GSG1L2A8MUP6 293 aa11.42□□□□□ -0.58
SF3B3-211ENST00000568291 APPP05067 770 aa11.42□□□□□ -0.58
SF3B3-211ENST00000568291 IRF5Q13568 498 aa11.42□□□□□ -0.58
SF3B3-211ENST00000568291 FAM110CQ1W6H9 321 aa11.42□□□□□ -0.58
SF3B3-211ENST00000568291 CTR9Q6PD62 1173 aa11.42□□□□□ -0.58
SF3B3-211ENST00000568291 CERS3Q8IU89 383 aa11.42□□□□□ -0.58
SF3B3-211ENST00000568291 ANKRD13CQ8N6S4 541 aa11.42□□□□□ -0.58
SF3B3-211ENST00000568291 PROCA1Q8NCQ7 364 aaPredicted RBP11.42□□□□□ -0.58
SF3B3-211ENST00000568291 STAP2Q9UGK3 403 aa11.42□□□□□ -0.58
SF3B3-211ENST00000568291 FRMPD3Q5JV73 1810 aa11.42□□□□□ -0.58
SF3B3-211ENST00000568291 MINDY4BA8MYZ0 360 aa11.41□□□□□ -0.58
SF3B3-211ENST00000568291 TRIM6-TRIM34B2RNG4 842 aa11.41□□□□□ -0.58
SF3B3-211ENST00000568291 GPAA1O43292 621 aa11.41□□□□□ -0.58
SF3B3-211ENST00000568291 ASNSP08243 561 aa11.41□□□□□ -0.58
SF3B3-211ENST00000568291 GUCY1A2P33402 732 aa11.41□□□□□ -0.58
SF3B3-211ENST00000568291 GABPAQ06546 454 aa11.41□□□□□ -0.58
SF3B3-211ENST00000568291 SEPT2Q15019 361 aa11.41□□□□□ -0.58
SF3B3-211ENST00000568291 ABCB5Q2M3G0 1257 aa11.41□□□□□ -0.58
SF3B3-211ENST00000568291 C12orf60Q5U649 245 aa11.41□□□□□ -0.58
SF3B3-211ENST00000568291 PLEKHM2Q8IWE5 1019 aa11.41□□□□□ -0.58
SF3B3-211ENST00000568291 PXYLP1Q8TE99 480 aa11.41□□□□□ -0.58
SF3B3-211ENST00000568291 APPBP2Q92624 585 aa11.41□□□□□ -0.58
SF3B3-211ENST00000568291 RILPL2Q969X0 211 aa11.41□□□□□ -0.58
SF3B3-211ENST00000568291 COA7Q96BR5 231 aa11.41□□□□□ -0.58
SF3B3-211ENST00000568291 EHD4Q9H223 541 aa11.41□□□□□ -0.58
SF3B3-211ENST00000568291 EPB41L4AQ9HCS5 686 aaPredicted RBP11.41□□□□□ -0.58
SF3B3-211ENST00000568291 NAV1Q8NEY1 1877 aa11.4□□□□□ -0.58
SF3B3-211ENST00000568291 SGPL1O95470 568 aa11.4□□□□□ -0.58
SF3B3-211ENST00000568291 AKR1B1P15121 316 aa11.4□□□□□ -0.58
SF3B3-211ENST00000568291 PDE4AP27815 886 aa11.4□□□□□ -0.58
SF3B3-211ENST00000568291 CDK8P49336 464 aa11.4□□□□□ -0.58
SF3B3-211ENST00000568291 PABPC4Q13310 644 aaKnown RBP eCLIP11.4□□□□□ -0.58
SF3B3-211ENST00000568291 AAMPQ13685 434 aa11.4□□□□□ -0.58
SF3B3-211ENST00000568291 TMED8Q6PL24 325 aaPredicted RBP11.4□□□□□ -0.58
SF3B3-211ENST00000568291 SKAP1Q86WV1 359 aa11.4□□□□□ -0.58
SF3B3-211ENST00000568291 FAM227BQ96M60 508 aa11.4□□□□□ -0.58
SF3B3-211ENST00000568291 TBC1D2Q9BYX2 928 aa11.4□□□□□ -0.58
SF3B3-211ENST00000568291 EMILIN3Q9NT22 766 aa11.4□□□□□ -0.58
SF3B3-211ENST00000568291 ATP8A2Q9NTI2 1148 aa11.4□□□□□ -0.58
SF3B3-211ENST00000568291 RBM27Q9P2N5 1060 aaKnown RBP11.4□□□□□ -0.58
SF3B3-211ENST00000568291 NR2E3Q9Y5X4 410 aa11.4□□□□□ -0.58
SF3B3-211ENST00000568291 A0A1W2PRG0 241 aa11.39□□□□□ -0.59
SF3B3-211ENST00000568291 USP17L10C9JJH3 530 aa11.39□□□□□ -0.59
SF3B3-211ENST00000568291 PRDM1O75626 825 aa11.39□□□□□ -0.59
SF3B3-211ENST00000568291 ZFYP08048 801 aaPredicted RBP11.39□□□□□ -0.59
SF3B3-211ENST00000568291 GCLCP48506 637 aaPredicted RBP11.39□□□□□ -0.59
SF3B3-211ENST00000568291 BACE1P56817 501 aa11.39□□□□□ -0.59
SF3B3-211ENST00000568291 ZMYM1Q5SVZ6 1142 aa11.39□□□□□ -0.59
SF3B3-211ENST00000568291 VPS53Q5VIR6 699 aa11.39□□□□□ -0.59
SF3B3-211ENST00000568291 DEFB118Q96PH6 123 aa11.39□□□□□ -0.59
SF3B3-211ENST00000568291 P2RX7Q99572 595 aaKnown RBP11.39□□□□□ -0.59
SF3B3-211ENST00000568291 WDR18Q9BV38 432 aa11.39□□□□□ -0.59
SF3B3-211ENST00000568291 XRN2Q9H0D6 950 aaKnown RBP eCLIP11.39□□□□□ -0.59
SF3B3-211ENST00000568291 ASCC2Q9H1I8 757 aaPredicted RBP11.39□□□□□ -0.59
SF3B3-211ENST00000568291 AS3MTQ9HBK9 375 aa11.39□□□□□ -0.59
SF3B3-211ENST00000568291 CABP5Q9NP86 173 aa11.39□□□□□ -0.59
SF3B3-211ENST00000568291 INCENPQ9NQS7 918 aa11.39□□□□□ -0.59
SF3B3-211ENST00000568291 PAK6Q9NQU5 681 aaPredicted RBP11.39□□□□□ -0.59
SF3B3-211ENST00000568291 FOXP2O15409 715 aa11.38□□□□□ -0.59
SF3B3-211ENST00000568291 TFRCP02786 760 aaKnown RBP11.38□□□□□ -0.59
SF3B3-211ENST00000568291 HMGCRP04035 888 aa11.38□□□□□ -0.59
SF3B3-211ENST00000568291 TDO2P48775 406 aa11.38□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 10.6 ms