RNA–Protein interactions for RNA: ENST00000564091.6

CLN3-211, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 790 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-211ENST00000564091 MORN1Q5T089 497 aa20.5■□□□□ 0.87
CLN3-211ENST00000564091 RHPN1Q8TCX5 695 aa20.5■□□□□ 0.87
CLN3-211ENST00000564091 GTF3C2Q8WUA4 911 aaPredicted RBP20.5■□□□□ 0.87
CLN3-211ENST00000564091 C12orf42Q96LP6 360 aa20.5■□□□□ 0.87
CLN3-211ENST00000564091 BCL11AQ9H165 835 aa20.5■□□□□ 0.87
CLN3-211ENST00000564091 SIPA1L1O43166 1804 aa20.49■□□□□ 0.87
CLN3-211ENST00000564091 MAGEB6P1A0A0J9YX57 407 aa20.49■□□□□ 0.87
CLN3-211ENST00000564091 APBB1O00213 710 aa20.49■□□□□ 0.87
CLN3-211ENST00000564091 SHMT1P34896 483 aa20.49■□□□□ 0.87
CLN3-211ENST00000564091 RGS2P41220 211 aa20.49■□□□□ 0.87
CLN3-211ENST00000564091 USP14P54578 494 aa20.49■□□□□ 0.87
CLN3-211ENST00000564091 EVX2Q03828 476 aa20.49■□□□□ 0.87
CLN3-211ENST00000564091 CATSPERGQ6ZRH7 1159 aa20.49■□□□□ 0.87
CLN3-211ENST00000564091 C11orf49Q9H6J7 331 aa20.49■□□□□ 0.87
CLN3-211ENST00000564091 CWC22Q9HCG8 908 aaKnown RBP20.49■□□□□ 0.87
CLN3-211ENST00000564091 RABGAP1Q9Y3P9 1069 aa20.49■□□□□ 0.87
CLN3-211ENST00000564091 DOCK3Q8IZD9 2030 aa20.49■□□□□ 0.87
CLN3-211ENST00000564091 SOX1O00570 391 aaPredicted RBP20.48■□□□□ 0.87
CLN3-211ENST00000564091 POLR3DP05423 398 aaPredicted RBP20.48■□□□□ 0.87
CLN3-211ENST00000564091 PDE6AP16499 860 aa20.48■□□□□ 0.87
CLN3-211ENST00000564091 VCAM1P19320 739 aa20.48■□□□□ 0.87
CLN3-211ENST00000564091 CCND3P30281 292 aaPredicted RBP20.48■□□□□ 0.87
CLN3-211ENST00000564091 GUCY1A2P33402 732 aa20.48■□□□□ 0.87
CLN3-211ENST00000564091 SLC9C2Q5TAH2 1124 aa20.48■□□□□ 0.87
CLN3-211ENST00000564091 KIAA1683Q9H0B3 1180 aa20.48■□□□□ 0.87
CLN3-211ENST00000564091 CABP5Q9NP86 173 aa20.48■□□□□ 0.87
CLN3-211ENST00000564091 SYN1P17600 705 aa20.47■□□□□ 0.87
CLN3-211ENST00000564091 HSP90AB4PQ58FF6 505 aa20.47■□□□□ 0.87
CLN3-211ENST00000564091 WDR78Q5VTH9 848 aa20.47■□□□□ 0.87
CLN3-211ENST00000564091 TMED8Q6PL24 325 aaPredicted RBP20.47■□□□□ 0.87
CLN3-211ENST00000564091 TRMT44Q8IYL2 757 aaKnown RBP20.47■□□□□ 0.87
CLN3-211ENST00000564091 DNAJC2Q99543 621 aaKnown RBP20.47■□□□□ 0.87
CLN3-211ENST00000564091 A0A1W2PPC1 479 aa20.46■□□□□ 0.87
CLN3-211ENST00000564091 GOLIM4O00461 696 aa20.46■□□□□ 0.87
CLN3-211ENST00000564091 MAP2K5Q13163 448 aa20.46■□□□□ 0.87
CLN3-211ENST00000564091 SEPT2Q15019 361 aa20.46■□□□□ 0.87
CLN3-211ENST00000564091 TTF1Q15361 905 aaPredicted RBP20.46■□□□□ 0.87
CLN3-211ENST00000564091 LRCH3Q96II8 777 aa20.46■□□□□ 0.87
CLN3-211ENST00000564091 APBA2Q99767 749 aa20.46■□□□□ 0.87
CLN3-211ENST00000564091 GDF15Q99988 308 aa20.46■□□□□ 0.87
CLN3-211ENST00000564091 MCM9Q9NXL9 1143 aa20.46■□□□□ 0.87
CLN3-211ENST00000564091 BTBD7Q9P203 1132 aa20.46■□□□□ 0.87
CLN3-211ENST00000564091 ZNF532Q9HCE3 1301 aa20.46■□□□□ 0.87
CLN3-211ENST00000564091 MAST2Q6P0Q8 1798 aa20.45■□□□□ 0.86
CLN3-211ENST00000564091 CCNA1P78396 465 aa20.45■□□□□ 0.86
CLN3-211ENST00000564091 GABPAQ06546 454 aa20.45■□□□□ 0.86
CLN3-211ENST00000564091 LHX8Q68G74 356 aa20.45■□□□□ 0.86
CLN3-211ENST00000564091 CLASRPQ8N2M8 674 aaKnown RBP20.45■□□□□ 0.86
CLN3-211ENST00000564091 SDR42E1Q8WUS8 393 aa20.45■□□□□ 0.86
CLN3-211ENST00000564091 EDC3Q96F86 508 aaKnown RBP20.45■□□□□ 0.86
CLN3-211ENST00000564091 CRNKL1Q9BZJ0 848 aaKnown RBP20.45■□□□□ 0.86
CLN3-211ENST00000564091 RPAP3Q9H6T3 665 aaPredicted RBP20.45■□□□□ 0.86
CLN3-211ENST00000564091 PFASO15067 1338 aa20.45■□□□□ 0.86
CLN3-211ENST00000564091 MPHOSPH10O00566 681 aaKnown RBP20.44■□□□□ 0.86
CLN3-211ENST00000564091 CYP2D6P10635 497 aa20.44■□□□□ 0.86
CLN3-211ENST00000564091 SIRT2Q8IXJ6 389 aa20.44■□□□□ 0.86
CLN3-211ENST00000564091 LCORLQ8N3X6 602 aa20.44■□□□□ 0.86
CLN3-211ENST00000564091 KIF1BPQ96EK5 621 aa20.44■□□□□ 0.86
CLN3-211ENST00000564091 FLRT1Q9NZU1 646 aa20.44■□□□□ 0.86
CLN3-211ENST00000564091 ZBED9Q6R2W3 1325 aa20.44■□□□□ 0.86
CLN3-211ENST00000564091 A0A1W2PRG0 241 aa20.43■□□□□ 0.86
CLN3-211ENST00000564091 TCRBV5S4A2TA0A5A2 114 aa20.43■□□□□ 0.86
CLN3-211ENST00000564091 SPDYE16A6NNV3 312 aaPredicted RBP20.43■□□□□ 0.86
CLN3-211ENST00000564091 GLRX3O76003 335 aaKnown RBP20.43■□□□□ 0.86
CLN3-211ENST00000564091 IFIT2P09913 472 aaKnown RBP20.43■□□□□ 0.86
CLN3-211ENST00000564091 PTPREP23469 700 aa20.43■□□□□ 0.86
CLN3-211ENST00000564091 SLFNL1Q499Z3 407 aa20.43■□□□□ 0.86
CLN3-211ENST00000564091 DIEXFQ68CQ4 756 aaKnown RBP20.43■□□□□ 0.86
CLN3-211ENST00000564091 SLC44A5Q8NCS7 719 aa20.43■□□□□ 0.86
CLN3-211ENST00000564091 COG6Q9Y2V7 657 aa20.43■□□□□ 0.86
CLN3-211ENST00000564091 ATAD5Q96QE3 1844 aa20.43■□□□□ 0.86
CLN3-211ENST00000564091 COL6A1P12109 1028 aa20.42■□□□□ 0.86
CLN3-211ENST00000564091 BMP8BP34820 402 aa20.42■□□□□ 0.86
CLN3-211ENST00000564091 LBX2Q6XYB7 198 aa20.42■□□□□ 0.86
CLN3-211ENST00000564091 RPAP2Q8IXW5 612 aaPredicted RBP20.42■□□□□ 0.86
CLN3-211ENST00000564091 PPIL4Q8WUA2 492 aaKnown RBP eCLIP20.42■□□□□ 0.86
CLN3-211ENST00000564091 ARMT1Q9H993 441 aa20.42■□□□□ 0.86
CLN3-211ENST00000564091 DCP1AQ9NPI6 582 aaPredicted RBP20.42■□□□□ 0.86
CLN3-211ENST00000564091 SLC15A5A6NIM6 579 aa20.41■□□□□ 0.86
CLN3-211ENST00000564091 PRKAB2O43741 272 aa20.41■□□□□ 0.86
CLN3-211ENST00000564091 MAGEA10P43363 369 aaPredicted RBP20.41■□□□□ 0.86
CLN3-211ENST00000564091 MFSD14CQ5VZR4 134 aa20.41■□□□□ 0.86
CLN3-211ENST00000564091 DYNLL2Q96FJ2 89 aa20.41■□□□□ 0.86
CLN3-211ENST00000564091 BOLA2Q9H3K6 86 aa20.41■□□□□ 0.86
CLN3-211ENST00000564091 ZBTB40Q9NUA8 1239 aa20.41■□□□□ 0.86
CLN3-211ENST00000564091 HMMRO75330 724 aa20.4■□□□□ 0.86
CLN3-211ENST00000564091 MS4A1P11836 297 aa20.4■□□□□ 0.86
CLN3-211ENST00000564091 GRB14Q14449 540 aa20.4■□□□□ 0.86
CLN3-211ENST00000564091 NPLOC4Q8TAT6 608 aa20.4■□□□□ 0.86
CLN3-211ENST00000564091 IVNS1ABPQ9Y6Y0 642 aa20.4■□□□□ 0.86
CLN3-211ENST00000564091 HOXC6P09630 235 aa20.39■□□□□ 0.85
CLN3-211ENST00000564091 CYP2C19P33261 490 aa20.39■□□□□ 0.85
CLN3-211ENST00000564091 ATP2B2Q01814 1243 aa20.39■□□□□ 0.85
CLN3-211ENST00000564091 COG2Q14746 738 aa20.39■□□□□ 0.85
CLN3-211ENST00000564091 LRRC26Q2I0M4 334 aa20.39■□□□□ 0.85
CLN3-211ENST00000564091 KIAA1755Q5JYT7 1200 aa20.39■□□□□ 0.85
CLN3-211ENST00000564091 TANGO6Q9C0B7 1094 aa20.39■□□□□ 0.85
CLN3-211ENST00000564091 PAG1Q9NWQ8 432 aa20.39■□□□□ 0.85
CLN3-211ENST00000564091 HOXC10Q9NYD6 342 aa20.39■□□□□ 0.85
CLN3-211ENST00000564091 DDX19BQ9UMR2 479 aa20.39■□□□□ 0.85
Retrieved 100 of 20,778 RNA–protein pairs in 47.1 ms