RNA–Protein interactions for RNA: ENST00000563297.5

CLK3-211, Transcript of CDC like kinase 3, humanhuman

TSL 4

Gene CLK3, Length 526 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-211ENST00000563297 USP17L20D6RJB6 530 aa19.09■□□□□ 0.65
CLK3-211ENST00000563297 POLR3DP05423 398 aaPredicted RBP19.09■□□□□ 0.65
CLK3-211ENST00000563297 XRCC5P13010 732 aaKnown RBP19.09■□□□□ 0.65
CLK3-211ENST00000563297 MAPK4P31152 587 aa19.09■□□□□ 0.65
CLK3-211ENST00000563297 GUCY1A2P33402 732 aa19.09■□□□□ 0.65
CLK3-211ENST00000563297 GABPAQ06546 454 aa19.09■□□□□ 0.65
CLK3-211ENST00000563297 USP17L24Q0WX57 530 aa19.09■□□□□ 0.65
CLK3-211ENST00000563297 GTF3C2Q8WUA4 911 aaPredicted RBP19.09■□□□□ 0.65
CLK3-211ENST00000563297 TRIB2Q92519 343 aa19.09■□□□□ 0.65
CLK3-211ENST00000563297 EDC3Q96F86 508 aaKnown RBP19.09■□□□□ 0.65
CLK3-211ENST00000563297 PAWRQ96IZ0 340 aaKnown RBP19.09■□□□□ 0.65
CLK3-211ENST00000563297 DNAJC2Q99543 621 aaKnown RBP19.09■□□□□ 0.65
CLK3-211ENST00000563297 PAGR1Q9BTK6 254 aa19.09■□□□□ 0.65
CLK3-211ENST00000563297 CRNKL1Q9BZJ0 848 aaKnown RBP19.09■□□□□ 0.65
CLK3-211ENST00000563297 KIAA1683Q9H0B3 1180 aa19.09■□□□□ 0.65
CLK3-211ENST00000563297 BCL11AQ9H165 835 aa19.09■□□□□ 0.65
CLK3-211ENST00000563297 PORCNQ9H237 461 aa19.09■□□□□ 0.65
CLK3-211ENST00000563297 CABP5Q9NP86 173 aa19.09■□□□□ 0.65
CLK3-211ENST00000563297 USP14P54578 494 aa19.08■□□□□ 0.64
CLK3-211ENST00000563297 EVX2Q03828 476 aa19.08■□□□□ 0.64
CLK3-211ENST00000563297 CATSPERGQ6ZRH7 1159 aa19.08■□□□□ 0.64
CLK3-211ENST00000563297 USP6NLQ92738 828 aa19.08■□□□□ 0.64
CLK3-211ENST00000563297 FEZ1Q99689 392 aa19.08■□□□□ 0.64
CLK3-211ENST00000563297 MCM9Q9NXL9 1143 aa19.08■□□□□ 0.64
CLK3-211ENST00000563297 RBM27Q9P2N5 1060 aaKnown RBP19.08■□□□□ 0.64
CLK3-211ENST00000563297 MAP3K21Q5TCX8 1036 aa19.07■□□□□ 0.64
CLK3-211ENST00000563297 GPR142Q7Z601 462 aa19.07■□□□□ 0.64
CLK3-211ENST00000563297 CCAR1Q8IX12 1150 aaKnown RBP19.07■□□□□ 0.64
CLK3-211ENST00000563297 SDR42E1Q8WUS8 393 aa19.07■□□□□ 0.64
CLK3-211ENST00000563297 SOCS4Q8WXH5 440 aa19.07■□□□□ 0.64
CLK3-211ENST00000563297 BOLA2Q9H3K6 86 aa19.07■□□□□ 0.64
CLK3-211ENST00000563297 CHMP4BQ9H444 224 aaKnown RBP19.07■□□□□ 0.64
CLK3-211ENST00000563297 RCAN3Q9UKA8 241 aa19.07■□□□□ 0.64
CLK3-211ENST00000563297 RABGAP1Q9Y3P9 1069 aa19.07■□□□□ 0.64
CLK3-211ENST00000563297 EVI5O60447 810 aa19.06■□□□□ 0.64
CLK3-211ENST00000563297 CNMDO75829 334 aa19.06■□□□□ 0.64
CLK3-211ENST00000563297 ATP5JP18859 108 aa19.06■□□□□ 0.64
CLK3-211ENST00000563297 SEPT2Q15019 361 aa19.06■□□□□ 0.64
CLK3-211ENST00000563297 MORN1Q5T089 497 aa19.06■□□□□ 0.64
CLK3-211ENST00000563297 NECAB2Q7Z6G3 386 aa19.06■□□□□ 0.64
CLK3-211ENST00000563297 PLEKHH3Q7Z736 793 aa19.06■□□□□ 0.64
CLK3-211ENST00000563297 LCORLQ8N3X6 602 aa19.06■□□□□ 0.64
CLK3-211ENST00000563297 ANKLE1Q8NAG6 615 aa19.06■□□□□ 0.64
CLK3-211ENST00000563297 DIS3LQ8TF46 1054 aaKnown RBP19.06■□□□□ 0.64
CLK3-211ENST00000563297 PRO3102Q9H379 93 aa19.06■□□□□ 0.64
CLK3-211ENST00000563297 DCP1AQ9NPI6 582 aaPredicted RBP19.06■□□□□ 0.64
CLK3-211ENST00000563297 VCAM1P19320 739 aa19.05■□□□□ 0.64
CLK3-211ENST00000563297 MNX1P50219 401 aaPredicted RBP19.05■□□□□ 0.64
CLK3-211ENST00000563297 PDE3AQ14432 1141 aa19.05■□□□□ 0.64
CLK3-211ENST00000563297 SLFNL1Q499Z3 407 aa19.05■□□□□ 0.64
CLK3-211ENST00000563297 TRMT44Q8IYL2 757 aaKnown RBP19.05■□□□□ 0.64
CLK3-211ENST00000563297 PAG1Q9NWQ8 432 aa19.05■□□□□ 0.64
CLK3-211ENST00000563297 RANBP2P49792 3224 aaKnown RBP19.05■□□□□ 0.64
CLK3-211ENST00000563297 CYP2D6P10635 497 aa19.04■□□□□ 0.64
CLK3-211ENST00000563297 PRKAR2AP13861 404 aaKnown RBP19.04■□□□□ 0.64
CLK3-211ENST00000563297 ADD2P35612 726 aa19.04■□□□□ 0.64
CLK3-211ENST00000563297 CACNB2Q08289 660 aaPredicted RBP19.04■□□□□ 0.64
CLK3-211ENST00000563297 CCL14Q16627 93 aa19.04■□□□□ 0.64
CLK3-211ENST00000563297 DDX60LQ5H9U9 1706 aaKnown RBP19.04■□□□□ 0.64
CLK3-211ENST00000563297 LBX2Q6XYB7 198 aa19.04■□□□□ 0.64
CLK3-211ENST00000563297 ARMT1Q9H993 441 aa19.04■□□□□ 0.64
CLK3-211ENST00000563297 OGDHLQ9ULD0 1010 aa19.04■□□□□ 0.64
CLK3-211ENST00000563297 ALPK3Q96L96 1907 aa19.04■□□□□ 0.64
CLK3-211ENST00000563297 NAV1Q8NEY1 1877 aa19.03■□□□□ 0.64
CLK3-211ENST00000563297 A0A1W2PRG0 241 aa19.03■□□□□ 0.64
CLK3-211ENST00000563297 PRKAB2O43741 272 aa19.03■□□□□ 0.64
CLK3-211ENST00000563297 RGS2P41220 211 aa19.03■□□□□ 0.64
CLK3-211ENST00000563297 C20orf194Q5TEA3 1177 aa19.03■□□□□ 0.64
CLK3-211ENST00000563297 HAUS7Q99871 368 aa19.03■□□□□ 0.64
CLK3-211ENST00000563297 NBPF3Q9H094 633 aa19.03■□□□□ 0.64
CLK3-211ENST00000563297 RPAP3Q9H6T3 665 aaPredicted RBP19.03■□□□□ 0.64
CLK3-211ENST00000563297 BTBD7Q9P203 1132 aa19.03■□□□□ 0.64
CLK3-211ENST00000563297 MPHOSPH10O00566 681 aaKnown RBP19.02■□□□□ 0.64
CLK3-211ENST00000563297 CCNA1P78396 465 aa19.02■□□□□ 0.64
CLK3-211ENST00000563297 MAP2K5Q13163 448 aa19.02■□□□□ 0.64
CLK3-211ENST00000563297 SLC44A5Q8NCS7 719 aa19.02■□□□□ 0.64
CLK3-211ENST00000563297 DYNLL2Q96FJ2 89 aa19.02■□□□□ 0.64
CLK3-211ENST00000563297 SPDYE16A6NNV3 312 aaPredicted RBP19.01■□□□□ 0.63
CLK3-211ENST00000563297 GLRX3O76003 335 aaKnown RBP19.01■□□□□ 0.63
CLK3-211ENST00000563297 MBD4O95243 580 aa19.01■□□□□ 0.63
CLK3-211ENST00000563297 CHGBP05060 677 aa19.01■□□□□ 0.63
CLK3-211ENST00000563297 ZKSCAN1P17029 563 aaPredicted RBP19.01■□□□□ 0.63
CLK3-211ENST00000563297 APBA2Q99767 749 aa19.01■□□□□ 0.63
CLK3-211ENST00000563297 CWC22Q9HCG8 908 aaKnown RBP19.01■□□□□ 0.63
CLK3-211ENST00000563297 ATP8A2Q9NTI2 1148 aa19.01■□□□□ 0.63
CLK3-211ENST00000563297 SWAP70Q9UH65 585 aa19.01■□□□□ 0.63
CLK3-211ENST00000563297 BAZ2AQ9UIF9 1905 aaKnown RBP19.01■□□□□ 0.63
CLK3-211ENST00000563297 SZT2Q5T011 3432 aa19■□□□□ 0.63
CLK3-211ENST00000563297 SMIM22K7EJ46 135 aa19■□□□□ 0.63
CLK3-211ENST00000563297 PTPREP23469 700 aa19■□□□□ 0.63
CLK3-211ENST00000563297 CCND3P30281 292 aaPredicted RBP19■□□□□ 0.63
CLK3-211ENST00000563297 COG2Q14746 738 aa19■□□□□ 0.63
CLK3-211ENST00000563297 TMEM179Q6ZVK1 233 aa19■□□□□ 0.63
CLK3-211ENST00000563297 SIAH1Q8IUQ4 282 aa19■□□□□ 0.63
CLK3-211ENST00000563297 LRRCC1Q9C099 1032 aa19■□□□□ 0.63
CLK3-211ENST00000563297 DDX24Q9GZR7 859 aaKnown RBP eCLIP19■□□□□ 0.633e-7■■□□□ 14.4
CLK3-211ENST00000563297 HOXC10Q9NYD6 342 aa19■□□□□ 0.63
CLK3-211ENST00000563297 SLC15A5A6NIM6 579 aa18.99■□□□□ 0.63
CLK3-211ENST00000563297 SMARCA5O60264 1052 aaPredicted RBP18.99■□□□□ 0.63
CLK3-211ENST00000563297 UBE3CQ15386 1083 aa18.99■□□□□ 0.63
Retrieved 100 of 20,778 RNA–protein pairs in 71.6 ms