RNA–Protein interactions for RNA: ENST00000561505.2

CLN3-208, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 495 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-208ENST00000561505 RIOK1Q9BRS2 568 aaKnown RBP20.05■□□□□ 0.8
CLN3-208ENST00000561505 TRIM34Q9BYJ4 488 aa20.05■□□□□ 0.8
CLN3-208ENST00000561505 ZKSCAN1P17029 563 aaPredicted RBP20.04■□□□□ 0.8
CLN3-208ENST00000561505 USP14P54578 494 aa20.04■□□□□ 0.8
CLN3-208ENST00000561505 PDE3AQ14432 1141 aa20.04■□□□□ 0.8
CLN3-208ENST00000561505 CCL14Q16627 93 aa20.04■□□□□ 0.8
CLN3-208ENST00000561505 CEP85Q6P2H3 762 aa20.04■□□□□ 0.8
CLN3-208ENST00000561505 TTC6Q86TZ1 520 aa20.04■□□□□ 0.8
CLN3-208ENST00000561505 C7orf61Q8IZ16 206 aa20.04■□□□□ 0.8
CLN3-208ENST00000561505 ANTXR1Q9H6X2 564 aa20.04■□□□□ 0.8
CLN3-208ENST00000561505 C1orf115Q9H7X2 142 aa20.04■□□□□ 0.8
CLN3-208ENST00000561505 MYH1P12882 1939 aa20.04■□□□□ 0.8
CLN3-208ENST00000561505 IDH1O75874 414 aaKnown RBP20.03■□□□□ 0.8
CLN3-208ENST00000561505 GUCY1A2P33402 732 aa20.03■□□□□ 0.8
CLN3-208ENST00000561505 SHMT1P34896 483 aa20.03■□□□□ 0.8
CLN3-208ENST00000561505 MAP2K5Q13163 448 aa20.03■□□□□ 0.8
CLN3-208ENST00000561505 MAGEB6Q8N7X4 407 aa20.03■□□□□ 0.8
CLN3-208ENST00000561505 MIGA1Q8NAN2 632 aa20.03■□□□□ 0.8
CLN3-208ENST00000561505 SLC15A5A6NIM6 579 aa20.02■□□□□ 0.8
CLN3-208ENST00000561505 CCND3P30281 292 aaPredicted RBP20.02■□□□□ 0.8
CLN3-208ENST00000561505 MAP3K12Q12852 859 aa20.02■□□□□ 0.8
CLN3-208ENST00000561505 CERKLQ49MI3 558 aaPredicted RBP20.02■□□□□ 0.8
CLN3-208ENST00000561505 ZMYND8Q9ULU4 1186 aaPredicted RBP20.02■□□□□ 0.8
CLN3-208ENST00000561505 VCAM1P19320 739 aa20.01■□□□□ 0.79
CLN3-208ENST00000561505 PTPREP23469 700 aa20.01■□□□□ 0.79
CLN3-208ENST00000561505 MAGEA10P43363 369 aaPredicted RBP20.01■□□□□ 0.79
CLN3-208ENST00000561505 USP5P45974 858 aa20.01■□□□□ 0.79
CLN3-208ENST00000561505 PLCD1P51178 756 aa20.01■□□□□ 0.79
CLN3-208ENST00000561505 CCNA1P78396 465 aa20.01■□□□□ 0.79
CLN3-208ENST00000561505 ACER1Q8TDN7 264 aa20.01■□□□□ 0.79
CLN3-208ENST00000561505 EDC3Q96F86 508 aaKnown RBP20.01■□□□□ 0.79
CLN3-208ENST00000561505 PAGR1Q9BTK6 254 aa20.01■□□□□ 0.79
CLN3-208ENST00000561505 BTBD7Q9P203 1132 aa20.01■□□□□ 0.79
CLN3-208ENST00000561505 COL6A3P12111 3177 aa20.01■□□□□ 0.79
CLN3-208ENST00000561505 GRB14Q14449 540 aa20■□□□□ 0.79
CLN3-208ENST00000561505 ABCB5Q2M3G0 1257 aa20■□□□□ 0.79
CLN3-208ENST00000561505 ERC1Q8IUD2 1116 aa20■□□□□ 0.79
CLN3-208ENST00000561505 FLRT1Q9NZU1 646 aa20■□□□□ 0.79
CLN3-208ENST00000561505 NDUFB9Q9Y6M9 179 aa20■□□□□ 0.79
CLN3-208ENST00000561505 SPDYE16A6NNV3 312 aaPredicted RBP19.99■□□□□ 0.79
CLN3-208ENST00000561505 GLRX3O76003 335 aaKnown RBP19.99■□□□□ 0.79
CLN3-208ENST00000561505 ITPRIPQ8IWB1 547 aa19.99■□□□□ 0.79
CLN3-208ENST00000561505 TDHQ8IZJ6 230 aa19.99■□□□□ 0.79
CLN3-208ENST00000561505 PPIL4Q8WUA2 492 aaKnown RBP eCLIP19.99■□□□□ 0.79
CLN3-208ENST00000561505 LRRC26Q2I0M4 334 aa19.98■□□□□ 0.79
CLN3-208ENST00000561505 CCAR1Q8IX12 1150 aaKnown RBP19.98■□□□□ 0.79
CLN3-208ENST00000561505 FTSJ3Q8IY81 847 aaKnown RBP19.98■□□□□ 0.79
CLN3-208ENST00000561505 CABP5Q9NP86 173 aa19.98■□□□□ 0.79
CLN3-208ENST00000561505 TCRBV5S4A2TA0A5A2 114 aa19.97■□□□□ 0.79
CLN3-208ENST00000561505 SYN1P17600 705 aa19.97■□□□□ 0.79
CLN3-208ENST00000561505 RAB3GAP1Q15042 981 aa19.97■□□□□ 0.79
CLN3-208ENST00000561505 TTF1Q15361 905 aaPredicted RBP19.97■□□□□ 0.79
CLN3-208ENST00000561505 AACSQ86V21 672 aa19.97■□□□□ 0.79
CLN3-208ENST00000561505 FEZ1Q99689 392 aa19.97■□□□□ 0.79
CLN3-208ENST00000561505 EXOC6BQ9Y2D4 811 aa19.97■□□□□ 0.79
CLN3-208ENST00000561505 A0A1W2PRG0 241 aa19.96■□□□□ 0.79
CLN3-208ENST00000561505 MSCO60682 206 aa19.96■□□□□ 0.79
CLN3-208ENST00000561505 HSP90AB4PQ58FF6 505 aa19.96■□□□□ 0.79
CLN3-208ENST00000561505 MFSD14CQ5VZR4 134 aa19.96■□□□□ 0.79
CLN3-208ENST00000561505 NPLOC4Q8TAT6 608 aa19.96■□□□□ 0.79
CLN3-208ENST00000561505 RHPN1Q8TCX5 695 aa19.96■□□□□ 0.79
CLN3-208ENST00000561505 RPAP3Q9H6T3 665 aaPredicted RBP19.96■□□□□ 0.79
CLN3-208ENST00000561505 ZNF236Q9UL36 1845 aa19.96■□□□□ 0.79
CLN3-208ENST00000561505 RLFQ13129 1914 aa19.96■□□□□ 0.79
CLN3-208ENST00000561505 FRMPD3Q5JV73 1810 aa19.95■□□□□ 0.78
CLN3-208ENST00000561505 MAGEB6P1A0A0J9YX57 407 aa19.95■□□□□ 0.78
CLN3-208ENST00000561505 STRNO43815 780 aa19.95■□□□□ 0.78
CLN3-208ENST00000561505 PDE6AP16499 860 aa19.95■□□□□ 0.78
CLN3-208ENST00000561505 COG2Q14746 738 aa19.95■□□□□ 0.78
CLN3-208ENST00000561505 SEPT2Q15019 361 aa19.95■□□□□ 0.78
CLN3-208ENST00000561505 ZYXQ15942 572 aaKnown RBP19.95■□□□□ 0.78
CLN3-208ENST00000561505 SLC17A8Q8NDX2 589 aa19.95■□□□□ 0.78
CLN3-208ENST00000561505 SHCBP1Q8NEM2 672 aa19.95■□□□□ 0.78
CLN3-208ENST00000561505 LPAR1Q92633 364 aa19.95■□□□□ 0.78
CLN3-208ENST00000561505 HOXC10Q9NYD6 342 aa19.95■□□□□ 0.78
CLN3-208ENST00000561505 DDX20Q9UHI6 824 aaKnown RBP19.95■□□□□ 0.78
CLN3-208ENST00000561505 CYBAP13498 195 aa19.94■□□□□ 0.78
CLN3-208ENST00000561505 SLC9C2Q5TAH2 1124 aa19.94■□□□□ 0.78
CLN3-208ENST00000561505 OLFML2BQ68BL8 750 aa19.94■□□□□ 0.78
CLN3-208ENST00000561505 SIAH1Q8IUQ4 282 aa19.94■□□□□ 0.78
CLN3-208ENST00000561505 TRPV1Q8NER1 839 aa19.94■□□□□ 0.78
CLN3-208ENST00000561505 CRNKL1Q9BZJ0 848 aaKnown RBP19.94■□□□□ 0.78
CLN3-208ENST00000561505 UBE2OQ9C0C9 1292 aaKnown RBP19.94■□□□□ 0.78
CLN3-208ENST00000561505 DCP1AQ9NPI6 582 aaPredicted RBP19.94■□□□□ 0.78
CLN3-208ENST00000561505 MTMR10Q9NXD2 777 aa19.94■□□□□ 0.78
CLN3-208ENST00000561505 A0A0C4DFX4 3053 aa19.94■□□□□ 0.78
CLN3-208ENST00000561505 A0A0G2JMZ2 1700 aa19.93■□□□□ 0.78
CLN3-208ENST00000561505 EVX2Q03828 476 aa19.93■□□□□ 0.78
CLN3-208ENST00000561505 MOV10L1Q9BXT6 1211 aaKnown RBP19.93■□□□□ 0.78
CLN3-208ENST00000561505 STXBP5LQ9Y2K9 1186 aa19.93■□□□□ 0.78
CLN3-208ENST00000561505 DNAH12Q6ZR08 3092 aa19.93■□□□□ 0.78
CLN3-208ENST00000561505 DNM1LO00429 736 aa19.92■□□□□ 0.78
CLN3-208ENST00000561505 POLR3DP05423 398 aaPredicted RBP19.92■□□□□ 0.78
CLN3-208ENST00000561505 ATP2B2Q01814 1243 aa19.92■□□□□ 0.78
CLN3-208ENST00000561505 KIAA1755Q5JYT7 1200 aa19.92■□□□□ 0.78
CLN3-208ENST00000561505 RPAP2Q8IXW5 612 aaPredicted RBP19.92■□□□□ 0.78
CLN3-208ENST00000561505 ABRAQ8N0Z2 381 aa19.92■□□□□ 0.78
CLN3-208ENST00000561505 DEFB123Q8N688 67 aa19.92■□□□□ 0.78
CLN3-208ENST00000561505 IVNS1ABPQ9Y6Y0 642 aa19.92■□□□□ 0.78
CLN3-208ENST00000561505 ZNF532Q9HCE3 1301 aa19.92■□□□□ 0.78
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms