RNA–Protein interactions for RNA: ENST00000560349.1

CARMIL3-203, Transcript of capping protein regulator and myosin 1 linker 3, humanhuman

TSL 1 (best)

Gene CARMIL3, Length 2,664 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CARMIL3-203ENST00000560349 LAMB1P07942 1786 aa16.26■□□□□ 0.19
CARMIL3-203ENST00000560349 COL11A2P13942 1736 aaPredicted RBP16.26■□□□□ 0.19
CARMIL3-203ENST00000560349 G3V3G9 751 aa16.26■□□□□ 0.19
CARMIL3-203ENST00000560349 LDHCP07864 332 aa16.26■□□□□ 0.19
CARMIL3-203ENST00000560349 PFKFB1P16118 471 aa16.26■□□□□ 0.19
CARMIL3-203ENST00000560349 SAFBQ15424 915 aaKnown RBP eCLIP16.26■□□□□ 0.19
CARMIL3-203ENST00000560349 DCAF8Q5TAQ9 597 aa16.26■□□□□ 0.19
CARMIL3-203ENST00000560349 ISM2Q6H9L7 571 aa16.26■□□□□ 0.19
CARMIL3-203ENST00000560349 C2CD5Q86YS7 1000 aa16.26■□□□□ 0.19
CARMIL3-203ENST00000560349 CTCFLQ8NI51 663 aaPredicted RBP16.26■□□□□ 0.19
CARMIL3-203ENST00000560349 MAP3K14Q99558 947 aa16.26■□□□□ 0.19
CARMIL3-203ENST00000560349 CABP5Q9NP86 173 aa16.26■□□□□ 0.19
CARMIL3-203ENST00000560349 PCDHB6Q9Y5E3 794 aa16.26■□□□□ 0.19
CARMIL3-203ENST00000560349 BIN1O00499 593 aa16.25■□□□□ 0.19
CARMIL3-203ENST00000560349 SLC39A14Q15043 492 aa16.25■□□□□ 0.19
CARMIL3-203ENST00000560349 PTPAQ15257 358 aa16.25■□□□□ 0.19
CARMIL3-203ENST00000560349 RBM43Q6ZSC3 357 aaKnown RBP16.25■□□□□ 0.19
CARMIL3-203ENST00000560349 TMTC3Q6ZXV5 915 aa16.25■□□□□ 0.19
CARMIL3-203ENST00000560349 CLEC10AQ8IUN9 316 aa16.25■□□□□ 0.19
CARMIL3-203ENST00000560349 FAM200AQ8TCP9 573 aa16.25■□□□□ 0.19
CARMIL3-203ENST00000560349 WASF1Q92558 559 aa16.25■□□□□ 0.19
CARMIL3-203ENST00000560349 TTF2Q9UNY4 1162 aaKnown RBP16.25■□□□□ 0.19
CARMIL3-203ENST00000560349 GPR75-ASB3A0A0A6YYF3 556 aa16.25■□□□□ 0.19
CARMIL3-203ENST00000560349 WNT7AO00755 349 aa16.25■□□□□ 0.19
CARMIL3-203ENST00000560349 GOLGA8HP0CJ92 632 aa16.25■□□□□ 0.19
CARMIL3-203ENST00000560349 TERF1P54274 439 aa16.25■□□□□ 0.19
CARMIL3-203ENST00000560349 PPP4CP60510 307 aa16.25■□□□□ 0.19
CARMIL3-203ENST00000560349 MTA3Q9BTC8 594 aa16.25■□□□□ 0.19
CARMIL3-203ENST00000560349 KAT14Q9H8E8 782 aa16.25■□□□□ 0.19
CARMIL3-203ENST00000560349 PDE6BP35913 854 aa16.24■□□□□ 0.19
CARMIL3-203ENST00000560349 SHC4Q6S5L8 630 aa16.24■□□□□ 0.19
CARMIL3-203ENST00000560349 SPC24Q8NBT2 197 aa16.24■□□□□ 0.19
CARMIL3-203ENST00000560349 PNMA1Q8ND90 353 aa16.24■□□□□ 0.19
CARMIL3-203ENST00000560349 RNF26Q9BY78 433 aaPredicted RBP16.24■□□□□ 0.19
CARMIL3-203ENST00000560349 CNTNAP5Q8WYK1 1306 aa16.24■□□□□ 0.19
CARMIL3-203ENST00000560349 RASA1P20936 1047 aa16.24■□□□□ 0.19
CARMIL3-203ENST00000560349 ZNF165P49910 485 aa16.24■□□□□ 0.19
CARMIL3-203ENST00000560349 CACNB3P54284 484 aa16.24■□□□□ 0.19
CARMIL3-203ENST00000560349 AMOTL1Q8IY63 956 aa16.24■□□□□ 0.19
CARMIL3-203ENST00000560349 ZNF444Q8N0Y2 327 aaPredicted RBP16.24■□□□□ 0.19
CARMIL3-203ENST00000560349 GPKOWQ92917 476 aaPredicted RBP eCLIP16.24■□□□□ 0.19
CARMIL3-203ENST00000560349 MASTLQ96GX5 879 aa16.24■□□□□ 0.19
CARMIL3-203ENST00000560349 PCP11498 1178 aaKnown RBP16.23■□□□□ 0.19
CARMIL3-203ENST00000560349 EIF6P56537 245 aaKnown RBP16.23■□□□□ 0.19
CARMIL3-203ENST00000560349 DDX4Q9NQI0 724 aaKnown RBP16.23■□□□□ 0.19
CARMIL3-203ENST00000560349 LTBP1Q14766 1721 aa16.23■□□□□ 0.19
CARMIL3-203ENST00000560349 MYH6P13533 1939 aa16.23■□□□□ 0.19
CARMIL3-203ENST00000560349 ZNF202O95125 648 aa16.23■□□□□ 0.19
CARMIL3-203ENST00000560349 DDAH1O94760 285 aa16.22■□□□□ 0.19
CARMIL3-203ENST00000560349 ALDH1B1P30837 517 aa16.22■□□□□ 0.19
CARMIL3-203ENST00000560349 CDK8P49336 464 aa16.22■□□□□ 0.19
CARMIL3-203ENST00000560349 DEFB132Q7Z7B7 95 aa16.22■□□□□ 0.19
CARMIL3-203ENST00000560349 KIAA0825Q8IV33 1275 aa16.22■□□□□ 0.19
CARMIL3-203ENST00000560349 COA1Q9GZY4 146 aa16.22■□□□□ 0.19
CARMIL3-203ENST00000560349 NAV1Q8NEY1 1877 aa16.22■□□□□ 0.19
CARMIL3-203ENST00000560349 ADAMTSL1Q8N6G6 1762 aa16.22■□□□□ 0.19
CARMIL3-203ENST00000560349 A0A1W2PQ27 194 aa16.22■□□□□ 0.19
CARMIL3-203ENST00000560349 A0A1W2PQ64 194 aa16.22■□□□□ 0.19
CARMIL3-203ENST00000560349 A0A1W2PQD8 194 aa16.22■□□□□ 0.19
CARMIL3-203ENST00000560349 TBC1D22AQ8WUA7 517 aa16.22■□□□□ 0.19
CARMIL3-203ENST00000560349 EYA3Q99504 573 aa16.22■□□□□ 0.19
CARMIL3-203ENST00000560349 LRRC37AA6NMS7 1700 aa16.21■□□□□ 0.19
CARMIL3-203ENST00000560349 RCAN1P53805 252 aa16.21■□□□□ 0.19
CARMIL3-203ENST00000560349 SLC15A2Q16348 729 aa16.21■□□□□ 0.19
CARMIL3-203ENST00000560349 SLC35G1Q2M3R5 365 aa16.21■□□□□ 0.19
CARMIL3-203ENST00000560349 UVSSAQ2YD98 709 aa16.21■□□□□ 0.19
CARMIL3-203ENST00000560349 TMX4Q9H1E5 349 aaPredicted RBP16.21■□□□□ 0.19
CARMIL3-203ENST00000560349 RBM28Q9NW13 759 aaKnown RBP16.21■□□□□ 0.19
CARMIL3-203ENST00000560349 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP16.21■□□□□ 0.19
CARMIL3-203ENST00000560349 FAM205AQ6ZU69 1335 aa16.21■□□□□ 0.19
CARMIL3-203ENST00000560349 PRPF3O43395 683 aaKnown RBP16.21■□□□□ 0.18
CARMIL3-203ENST00000560349 CALM1P0DP23 149 aa16.21■□□□□ 0.18
CARMIL3-203ENST00000560349 CALM2P0DP24 149 aa16.21■□□□□ 0.18
CARMIL3-203ENST00000560349 CALM3P0DP25 149 aa16.21■□□□□ 0.18
CARMIL3-203ENST00000560349 FLAD1Q8NFF5 587 aa16.21■□□□□ 0.18
CARMIL3-203ENST00000560349 RASGRP4Q8TDF6 673 aa16.21■□□□□ 0.18
CARMIL3-203ENST00000560349 TMEM47Q9BQJ4 181 aa16.21■□□□□ 0.18
CARMIL3-203ENST00000560349 GAKO14976 1311 aa16.2■□□□□ 0.18
CARMIL3-203ENST00000560349 CDK5RAP2Q96SN8 1893 aa16.2■□□□□ 0.18
CARMIL3-203ENST00000560349 SNED1Q8TER0 1413 aa16.2■□□□□ 0.18
CARMIL3-203ENST00000560349 FAM196BA6NMK8 535 aa16.2■□□□□ 0.18
CARMIL3-203ENST00000560349 H0YIN7 160 aa16.2■□□□□ 0.18
CARMIL3-203ENST00000560349 NFIAQ12857 509 aa16.2■□□□□ 0.18
CARMIL3-203ENST00000560349 NPY5RQ15761 445 aa16.2■□□□□ 0.18
CARMIL3-203ENST00000560349 USP49Q70CQ1 688 aa16.2■□□□□ 0.18
CARMIL3-203ENST00000560349 PDILTQ8N807 584 aa16.2■□□□□ 0.18
CARMIL3-203ENST00000560349 PHF20Q9BVI0 1012 aa16.2■□□□□ 0.18
CARMIL3-203ENST00000560349 FOXP1Q9H334 677 aaPredicted RBP16.2■□□□□ 0.18
CARMIL3-203ENST00000560349 TTC12Q9H892 705 aaPredicted RBP16.2■□□□□ 0.18
CARMIL3-203ENST00000560349 CMA1P23946 247 aa16.2■□□□□ 0.18
CARMIL3-203ENST00000560349 SYKP43405 635 aa16.2■□□□□ 0.18
CARMIL3-203ENST00000560349 DPCR1Q3MIW9 517 aa16.2■□□□□ 0.18
CARMIL3-203ENST00000560349 FOXN1O15353 648 aa16.19■□□□□ 0.18
CARMIL3-203ENST00000560349 KRT2P35908 639 aa16.19■□□□□ 0.18
CARMIL3-203ENST00000560349 TCP10Q12799 353 aa16.19■□□□□ 0.18
CARMIL3-203ENST00000560349 AOC3Q16853 763 aa16.19■□□□□ 0.18
CARMIL3-203ENST00000560349 TMC4Q7Z404 712 aa16.19■□□□□ 0.18
CARMIL3-203ENST00000560349 CEP95Q96GE4 821 aa16.19■□□□□ 0.18
CARMIL3-203ENST00000560349 USP40Q9NVE5 1235 aa16.19■□□□□ 0.18
CARMIL3-203ENST00000560349 ROBO3Q96MS0 1386 aa16.19■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms