RNA–Protein interactions for RNA: ENST00000558925.1

USP3-209, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 3

Gene USP3, Length 501 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-209ENST00000558925 KCNN1Q92952 543 aa2.57□□□□□ -2
USP3-209ENST00000558925 ATXN3LQ9H3M9 355 aa2.57□□□□□ -2
USP3-209ENST00000558925 ZNF576Q9H609 170 aa2.57□□□□□ -2
USP3-209ENST00000558925 SEMA3GQ9NS98 782 aa2.57□□□□□ -2
USP3-209ENST00000558925 ADAMTS1Q9UHI8 967 aa2.57□□□□□ -2
USP3-209ENST00000558925 TLR6Q9Y2C9 796 aa2.57□□□□□ -2
USP3-209ENST00000558925 AKAP2Q9Y2D5 859 aa2.57□□□□□ -2
USP3-209ENST00000558925 INPP5FQ9Y2H2 1132 aa2.57□□□□□ -2
USP3-209ENST00000558925 MYOCOSA0A1B0GUC4 107 aa2.56□□□□□ -2
USP3-209ENST00000558925 OTOL1A6NHN0 477 aaPredicted RBP2.56□□□□□ -2
USP3-209ENST00000558925 MINDY4BA8MYZ0 360 aa2.56□□□□□ -2
USP3-209ENST00000558925 PRR33A8MZF0 331 aa2.56□□□□□ -2
USP3-209ENST00000558925 RNGTTO60942 597 aaKnown RBP2.56□□□□□ -2
USP3-209ENST00000558925 PAGE1O75459 146 aa2.56□□□□□ -2
USP3-209ENST00000558925 GSTT1P30711 240 aa2.56□□□□□ -2
USP3-209ENST00000558925 NTF4P34130 210 aa2.56□□□□□ -2
USP3-209ENST00000558925 ITGAEP38570 1179 aa2.56□□□□□ -2
USP3-209ENST00000558925 ST13P50502 369 aaKnown RBP2.56□□□□□ -2
USP3-209ENST00000558925 FAM160A1Q05DH4 1040 aa2.56□□□□□ -2
USP3-209ENST00000558925 FAAP100Q0VG06 881 aa2.56□□□□□ -2
USP3-209ENST00000558925 SF3A1Q15459 793 aaKnown RBP2.56□□□□□ -2
USP3-209ENST00000558925 CCDC85BQ15834 202 aaPredicted RBP2.56□□□□□ -2
USP3-209ENST00000558925 KIF4BQ2VIQ3 1234 aa2.56□□□□□ -2
USP3-209ENST00000558925 HP1BP3Q5SSJ5 553 aaPredicted RBP2.56□□□□□ -2
USP3-209ENST00000558925 DTHD1Q6ZMT9 781 aa2.56□□□□□ -2
USP3-209ENST00000558925 MCF2L2Q86YR7 1114 aa2.56□□□□□ -2
USP3-209ENST00000558925 ZNF654Q8IZM8 581 aa2.56□□□□□ -2
USP3-209ENST00000558925 BAHD1Q8TBE0 780 aaPredicted RBP2.56□□□□□ -2
USP3-209ENST00000558925 UBXN4Q92575 508 aa2.56□□□□□ -2
USP3-209ENST00000558925 SRCIN1Q9C0H9 1055 aa2.56□□□□□ -2
USP3-209ENST00000558925 MCOLN1Q9GZU1 580 aa2.56□□□□□ -2
USP3-209ENST00000558925 GCM1Q9NP62 436 aa2.56□□□□□ -2
USP3-209ENST00000558925 IGF2BP3O00425 579 aaKnown RBP eCLIP2.55□□□□□ -2
USP3-209ENST00000558925 ENC1O14682 589 aa2.55□□□□□ -2
USP3-209ENST00000558925 SUV39H1O43463 412 aa2.55□□□□□ -2
USP3-209ENST00000558925 EIF4EBP3O60516 100 aaPredicted RBP2.55□□□□□ -2
USP3-209ENST00000558925 EOMESO95936 686 aa2.55□□□□□ -2
USP3-209ENST00000558925 FGRP09769 529 aa2.55□□□□□ -2
USP3-209ENST00000558925 SRFP11831 508 aa2.55□□□□□ -2
USP3-209ENST00000558925 GBP2P32456 591 aaPredicted RBP2.55□□□□□ -2
USP3-209ENST00000558925 TRHRP34981 398 aaPredicted RBP2.55□□□□□ -2
USP3-209ENST00000558925 GTF2F1P35269 517 aaKnown RBP eCLIP2.55□□□□□ -2
USP3-209ENST00000558925 LIG3P49916 1009 aa2.55□□□□□ -2
USP3-209ENST00000558925 CLCN7P51798 805 aa2.55□□□□□ -2
USP3-209ENST00000558925 ADAMTS20P59510 1910 aa2.55□□□□□ -2
USP3-209ENST00000558925 DLG4P78352 724 aa2.55□□□□□ -2
USP3-209ENST00000558925 SSPNQ14714 243 aa2.55□□□□□ -2
USP3-209ENST00000558925 RASIP1Q5U651 963 aa2.55□□□□□ -2
USP3-209ENST00000558925 SLC43A3Q8NBI5 491 aa2.55□□□□□ -2
USP3-209ENST00000558925 PHC3Q8NDX5 983 aa2.55□□□□□ -2
USP3-209ENST00000558925 ABHD4Q8TB40 342 aa2.55□□□□□ -2
USP3-209ENST00000558925 STK35Q8TDR2 534 aa2.55□□□□□ -2
USP3-209ENST00000558925 HSPA12BQ96MM6 686 aa2.55□□□□□ -2
USP3-209ENST00000558925 SLC26A8Q96RN1 970 aa2.55□□□□□ -2
USP3-209ENST00000558925 SPON2Q9BUD6 331 aa2.55□□□□□ -2
USP3-209ENST00000558925 LNPKQ9C0E8 428 aa2.55□□□□□ -2
USP3-209ENST00000558925 SP110Q9HB58 689 aa2.55□□□□□ -2
USP3-209ENST00000558925 PCOLCE2Q9UKZ9 415 aa2.55□□□□□ -2
USP3-209ENST00000558925 SHROOM4Q9ULL8 1493 aa2.55□□□□□ -2
USP3-209ENST00000558925 TRAK1Q9UPV9 953 aa2.55□□□□□ -2
USP3-209ENST00000558925 DNAJC25-GNG10A0A024R161 153 aa2.54□□□□□ -2
USP3-209ENST00000558925 OVOL3O00110 214 aa2.54□□□□□ -2
USP3-209ENST00000558925 AKAP8O43823 692 aaKnown RBP2.54□□□□□ -2
USP3-209ENST00000558925 PF4P02776 101 aa2.54□□□□□ -2
USP3-209ENST00000558925 CELA3BP08861 270 aa2.54□□□□□ -2
USP3-209ENST00000558925 ATF4P18848 351 aaPredicted RBP2.54□□□□□ -2
USP3-209ENST00000558925 TFE3P19532 575 aaPredicted RBP2.54□□□□□ -2
USP3-209ENST00000558925 ATP2B1P20020 1258 aa2.54□□□□□ -2
USP3-209ENST00000558925 GARTP22102 1010 aa2.54□□□□□ -2
USP3-209ENST00000558925 ITPKAP23677 461 aa2.54□□□□□ -2
USP3-209ENST00000558925 GJA8P48165 433 aa2.54□□□□□ -2
USP3-209ENST00000558925 ARID5AQ03989 594 aa2.54□□□□□ -2
USP3-209ENST00000558925 ZXDCQ2QGD7 858 aaPredicted RBP2.54□□□□□ -2
USP3-209ENST00000558925 RALGPS1Q5JS13 557 aa2.54□□□□□ -2
USP3-209ENST00000558925 FBXL19Q6PCT2 694 aa2.54□□□□□ -2
USP3-209ENST00000558925 DPH6Q7L8W6 267 aa2.54□□□□□ -2
USP3-209ENST00000558925 PDZD3Q86UT5 571 aa2.54□□□□□ -2
USP3-209ENST00000558925 FAM177A1Q8N128 213 aaPredicted RBP2.54□□□□□ -2
USP3-209ENST00000558925 FEZF2Q8TBJ5 459 aa2.54□□□□□ -2
USP3-209ENST00000558925 PMFBP1Q8TBY8 1022 aa2.54□□□□□ -2
USP3-209ENST00000558925 PANK1Q8TE04 598 aa2.54□□□□□ -2
USP3-209ENST00000558925 ZNF296Q8WUU4 475 aaPredicted RBP2.54□□□□□ -2
USP3-209ENST00000558925 GPRASP2Q96D09 838 aa2.54□□□□□ -2
USP3-209ENST00000558925 EAF1Q96JC9 268 aaPredicted RBP2.54□□□□□ -2
USP3-209ENST00000558925 RHOVQ96L33 236 aa2.54□□□□□ -2
USP3-209ENST00000558925 TMEM74Q96NL1 305 aa2.54□□□□□ -2
USP3-209ENST00000558925 GMLQ99445 158 aa2.54□□□□□ -2
USP3-209ENST00000558925 NOC4LQ9BVI4 516 aaKnown RBP2.54□□□□□ -2
USP3-209ENST00000558925 SGPP1Q9BX95 441 aa2.54□□□□□ -2
USP3-209ENST00000558925 PIF1Q9H611 641 aa2.54□□□□□ -2
USP3-209ENST00000558925 ZFYVE1Q9HBF4 777 aa2.54□□□□□ -2
USP3-209ENST00000558925 PRDM10Q9NQV6 1147 aa2.54□□□□□ -2
USP3-209ENST00000558925 UBP1Q9NZI7 540 aa2.54□□□□□ -2
USP3-209ENST00000558925 GPN3Q9UHW5 284 aaPredicted RBP2.54□□□□□ -2
USP3-209ENST00000558925 PCDHB5Q9Y5E4 795 aa2.54□□□□□ -2
USP3-209ENST00000558925 TLR3O15455 904 aaKnown RBP2.53□□□□□ -2
USP3-209ENST00000558925 SMARCA5O60264 1052 aaPredicted RBP2.53□□□□□ -2
USP3-209ENST00000558925 INSRRP14616 1297 aa2.53□□□□□ -2
USP3-209ENST00000558925 EIF4A3P38919 411 aaKnown RBP2.53□□□□□ -2
USP3-209ENST00000558925 CRKP46108 304 aa2.53□□□□□ -2
Retrieved 100 of 20,778 RNA–protein pairs in 15 ms