RNA–Protein interactions for RNA: ENST00000557782.1

TDP1-217, Transcript of tyrosyl-DNA phosphodiesterase 1, humanhuman

TSL 5

Gene TDP1, Length 318 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1-217ENST00000557782 FBXO41Q8TF61 875 aa4.89□□□□□ -1.63
TDP1-217ENST00000557782 SMARCC1Q92922 1105 aaPredicted RBP4.89□□□□□ -1.63
TDP1-217ENST00000557782 SLC39A13Q96H72 371 aa4.89□□□□□ -1.63
TDP1-217ENST00000557782 DNAJB12Q9NXW2 375 aaKnown RBP4.89□□□□□ -1.63
TDP1-217ENST00000557782 TERF2IPQ9NYB0 399 aa4.89□□□□□ -1.63
TDP1-217ENST00000557782 NDOR1Q9UHB4 597 aa4.89□□□□□ -1.63
TDP1-217ENST00000557782 ADAM30Q9UKF2 790 aa4.89□□□□□ -1.63
TDP1-217ENST00000557782 NOB1Q9ULX3 412 aaKnown RBP4.89□□□□□ -1.63
TDP1-217ENST00000557782 CCDC189A1A4V9 331 aa4.88□□□□□ -1.63
TDP1-217ENST00000557782 BNIP3LO60238 219 aa4.88□□□□□ -1.63
TDP1-217ENST00000557782 RFPL1O75677 317 aa4.88□□□□□ -1.63
TDP1-217ENST00000557782 ASLP04424 464 aa4.88□□□□□ -1.63
TDP1-217ENST00000557782 PGRP06401 933 aa4.88□□□□□ -1.63
TDP1-217ENST00000557782 CENPBP07199 599 aaPredicted RBP4.88□□□□□ -1.63
TDP1-217ENST00000557782 PABPC1P11940 636 aaKnown RBP4.88□□□□□ -1.63
TDP1-217ENST00000557782 SELPP16109 830 aa4.88□□□□□ -1.63
TDP1-217ENST00000557782 ARL4DP49703 201 aa4.88□□□□□ -1.63
TDP1-217ENST00000557782 PMS1P54277 932 aaKnown RBP4.88□□□□□ -1.63
TDP1-217ENST00000557782 INPP5AQ14642 412 aa4.88□□□□□ -1.63
TDP1-217ENST00000557782 ZNF800Q2TB10 664 aaPredicted RBP eCLIP4.88□□□□□ -1.63
TDP1-217ENST00000557782 FAM182BQ5T319 152 aa4.88□□□□□ -1.63
TDP1-217ENST00000557782 YOD1Q5VVQ6 348 aaPredicted RBP4.88□□□□□ -1.63
TDP1-217ENST00000557782 HEATR6Q6AI08 1181 aaKnown RBP4.88□□□□□ -1.63
TDP1-217ENST00000557782 CXorf57Q6NSI4 855 aaKnown RBP4.88□□□□□ -1.63
TDP1-217ENST00000557782 NSMFQ6X4W1 530 aa4.88□□□□□ -1.63
TDP1-217ENST00000557782 BRAPQ7Z569 592 aa4.88□□□□□ -1.63
TDP1-217ENST00000557782 DGKHQ86XP1 1220 aa4.88□□□□□ -1.63
TDP1-217ENST00000557782 LRRN4CLQ8ND94 238 aa4.88□□□□□ -1.63
TDP1-217ENST00000557782 SVIPQ8NHG7 77 aa4.88□□□□□ -1.63
TDP1-217ENST00000557782 PPM1EQ8WY54 764 aa4.88□□□□□ -1.63
TDP1-217ENST00000557782 ABHD17AQ96GS6 310 aa4.88□□□□□ -1.63
TDP1-217ENST00000557782 SCYL1Q96KG9 808 aa4.88□□□□□ -1.63
TDP1-217ENST00000557782 NAP1L4Q99733 375 aaKnown RBP4.88□□□□□ -1.63
TDP1-217ENST00000557782 CORO1BQ9BR76 489 aa4.88□□□□□ -1.63
TDP1-217ENST00000557782 RTFDC1Q9BY42 306 aaPredicted RBP4.88□□□□□ -1.63
TDP1-217ENST00000557782 ZC3H12CQ9C0D7 883 aaKnown RBP4.88□□□□□ -1.63
TDP1-217ENST00000557782 LACRTQ9GZZ8 138 aa4.88□□□□□ -1.63
TDP1-217ENST00000557782 MAF1Q9H063 256 aa4.88□□□□□ -1.63
TDP1-217ENST00000557782 SOX17Q9H6I2 414 aaPredicted RBP4.88□□□□□ -1.63
TDP1-217ENST00000557782 IFT22Q9H7X7 185 aa4.88□□□□□ -1.63
TDP1-217ENST00000557782 TRIM39Q9HCM9 518 aa4.88□□□□□ -1.63
TDP1-217ENST00000557782 LUC7LQ9NQ29 371 aaKnown RBP4.88□□□□□ -1.63
TDP1-217ENST00000557782 CHST12Q9NRB3 414 aa4.88□□□□□ -1.63
TDP1-217ENST00000557782 GNL3LQ9NVN8 582 aaKnown RBP4.88□□□□□ -1.63
TDP1-217ENST00000557782 TRHDEQ9UKU6 1024 aa4.88□□□□□ -1.63
TDP1-217ENST00000557782 ATXN7L1Q9ULK2 861 aaPredicted RBP4.88□□□□□ -1.63
TDP1-217ENST00000557782 APOBEC2Q9Y235 224 aaKnown RBP4.88□□□□□ -1.63
TDP1-217ENST00000557782 H3BRJ5 948 aa4.87□□□□□ -1.63
TDP1-217ENST00000557782 PRODHO43272 600 aa4.87□□□□□ -1.63
TDP1-217ENST00000557782 KPNA6O60684 536 aa4.87□□□□□ -1.63
TDP1-217ENST00000557782 DNAJA2O60884 412 aa4.87□□□□□ -1.63
TDP1-217ENST00000557782 CYP11A1P05108 521 aa4.87□□□□□ -1.63
TDP1-217ENST00000557782 IFIT2P09913 472 aaKnown RBP4.87□□□□□ -1.63
TDP1-217ENST00000557782 CT47B1P0C2W7 299 aaPredicted RBP4.87□□□□□ -1.63
TDP1-217ENST00000557782 NBPF7P0C2Y1 421 aaPredicted RBP4.87□□□□□ -1.63
TDP1-217ENST00000557782 CPB1P15086 417 aa4.87□□□□□ -1.63
TDP1-217ENST00000557782 IGFALSP35858 605 aa4.87□□□□□ -1.63
TDP1-217ENST00000557782 YARSP54577 528 aaKnown RBP4.87□□□□□ -1.63
TDP1-217ENST00000557782 GABREP78334 506 aa4.87□□□□□ -1.63
TDP1-217ENST00000557782 PURAQ00577 322 aaKnown RBP4.87□□□□□ -1.63
TDP1-217ENST00000557782 GSTM4Q03013 218 aa4.87□□□□□ -1.63
TDP1-217ENST00000557782 UBAP2LQ14157 1087 aaKnown RBP4.87□□□□□ -1.63
TDP1-217ENST00000557782 PCBP1Q15365 356 aaKnown RBP eCLIP4.87□□□□□ -1.63
TDP1-217ENST00000557782 SYDE2Q5VT97 1194 aa4.87□□□□□ -1.63
TDP1-217ENST00000557782 LHFPL2Q6ZUX7 228 aa4.87□□□□□ -1.63
TDP1-217ENST00000557782 UBE2R2Q712K3 238 aaPredicted RBP4.87□□□□□ -1.63
TDP1-217ENST00000557782 FAM35AQ86V20 835 aa4.87□□□□□ -1.63
TDP1-217ENST00000557782 ZNF227Q86WZ6 799 aa4.87□□□□□ -1.63
TDP1-217ENST00000557782 PHACTR4Q8IZ21 702 aa4.87□□□□□ -1.63
TDP1-217ENST00000557782 CACTIN-AS1Q8N1I8 211 aa4.87□□□□□ -1.63
TDP1-217ENST00000557782 CNTD1Q8N815 330 aa4.87□□□□□ -1.63
TDP1-217ENST00000557782 FAM13CQ8NE31 585 aa4.87□□□□□ -1.63
TDP1-217ENST00000557782 OR2W6PQ8NHA6 318 aa4.87□□□□□ -1.63
TDP1-217ENST00000557782 ARPC5LQ9BPX5 153 aa4.87□□□□□ -1.63
TDP1-217ENST00000557782 GBP3Q9H0R5 595 aa4.87□□□□□ -1.63
TDP1-217ENST00000557782 CCDC8Q9H0W5 538 aaPredicted RBP4.87□□□□□ -1.63
TDP1-217ENST00000557782 FBRSQ9HAH7 460 aa4.87□□□□□ -1.63
TDP1-217ENST00000557782 AVENQ9NQS1 362 aaPredicted RBP4.87□□□□□ -1.63
TDP1-217ENST00000557782 PRDM11Q9NQV5 511 aa4.87□□□□□ -1.63
TDP1-217ENST00000557782 NDFIP2Q9NV92 336 aa4.87□□□□□ -1.63
TDP1-217ENST00000557782 SUCOQ9UBS9 1254 aaKnown RBP4.87□□□□□ -1.63
TDP1-217ENST00000557782 PHF24Q9UPV7 400 aa4.87□□□□□ -1.63
TDP1-217ENST00000557782 TNPO3Q9Y5L0 923 aaKnown RBP4.87□□□□□ -1.63
TDP1-217ENST00000557782 PRAMEF27A3QJZ7 478 aa4.86□□□□□ -1.63
TDP1-217ENST00000557782 CHURC1-FNTBB4DL54 471 aa4.86□□□□□ -1.63
TDP1-217ENST00000557782 B4E1Z4 1266 aa4.86□□□□□ -1.63
TDP1-217ENST00000557782 NOP56O00567 594 aaKnown RBP4.86□□□□□ -1.63
TDP1-217ENST00000557782 ZEB2O60315 1214 aa4.86□□□□□ -1.63
TDP1-217ENST00000557782 FBXO21O94952 628 aa4.86□□□□□ -1.63
TDP1-217ENST00000557782 ITGAVP06756 1048 aa4.86□□□□□ -1.63
TDP1-217ENST00000557782 THBS1P07996 1170 aa4.86□□□□□ -1.63
TDP1-217ENST00000557782 PYGMP11217 842 aa4.86□□□□□ -1.63
TDP1-217ENST00000557782 ZSCAN20P17040 1043 aaPredicted RBP4.86□□□□□ -1.63
TDP1-217ENST00000557782 GRK4P32298 578 aa4.86□□□□□ -1.63
TDP1-217ENST00000557782 ETF1P62495 437 aaKnown RBP4.86□□□□□ -1.63
TDP1-217ENST00000557782 PDE3AQ14432 1141 aa4.86□□□□□ -1.63
TDP1-217ENST00000557782 SETDB1Q15047 1291 aa4.86□□□□□ -1.63
TDP1-217ENST00000557782 POU4F3Q15319 338 aa4.86□□□□□ -1.63
TDP1-217ENST00000557782 CFAP100Q494V2 611 aa4.86□□□□□ -1.63
TDP1-217ENST00000557782 ELMSAN1Q6PJG2 1045 aa4.86□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms