RNA–Protein interactions for RNA: ENST00000556798.1

SHMT2-225, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 525 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-225ENST00000556798 HMGCS2P54868 508 aa20.75■□□□□ 0.91
SHMT2-225ENST00000556798 INHBEP58166 350 aa20.75■□□□□ 0.91
SHMT2-225ENST00000556798 ICA1Q05084 483 aa20.75■□□□□ 0.91
SHMT2-225ENST00000556798 IMMTQ16891 758 aaKnown RBP20.75■□□□□ 0.91
SHMT2-225ENST00000556798 GADL1Q6ZQY3 521 aa20.75■□□□□ 0.91
SHMT2-225ENST00000556798 FAM43AQ8N2R8 423 aa20.75■□□□□ 0.91
SHMT2-225ENST00000556798 FEZ1Q99689 392 aa20.75■□□□□ 0.91
SHMT2-225ENST00000556798 GNL3Q9BVP2 549 aaKnown RBP eCLIP20.75■□□□□ 0.91
SHMT2-225ENST00000556798 RNF186Q9NXI6 227 aa20.75■□□□□ 0.91
SHMT2-225ENST00000556798 BTBD19C9JJ37 291 aa20.74■□□□□ 0.91
SHMT2-225ENST00000556798 TRPA1O75762 1119 aa20.74■□□□□ 0.91
SHMT2-225ENST00000556798 ZYXQ15942 572 aaKnown RBP20.74■□□□□ 0.91
SHMT2-225ENST00000556798 AKNAD1Q5T1N1 836 aa20.74■□□□□ 0.91
SHMT2-225ENST00000556798 RBM8AQ9Y5S9 174 aaKnown RBP20.74■□□□□ 0.91
SHMT2-225ENST00000556798 U3KPZ7 1027 aaPredicted RBP20.74■□□□□ 0.91
SHMT2-225ENST00000556798 NEDD4P46934 1319 aa20.74■□□□□ 0.91
SHMT2-225ENST00000556798 USP17L10C9JJH3 530 aa20.73■□□□□ 0.91
SHMT2-225ENST00000556798 FOXN1O15353 648 aa20.73■□□□□ 0.91
SHMT2-225ENST00000556798 RANBP6O60518 1105 aaKnown RBP20.73■□□□□ 0.91
SHMT2-225ENST00000556798 FGRP09769 529 aa20.73■□□□□ 0.91
SHMT2-225ENST00000556798 TSPY3P0CV98 308 aa20.73■□□□□ 0.91
SHMT2-225ENST00000556798 TSPY8P0CW00 308 aa20.73■□□□□ 0.91
SHMT2-225ENST00000556798 BACE1P56817 501 aa20.73■□□□□ 0.91
SHMT2-225ENST00000556798 TFAP4Q01664 338 aa20.73■□□□□ 0.91
SHMT2-225ENST00000556798 MFSD6Q6ZSS7 791 aa20.73■□□□□ 0.91
SHMT2-225ENST00000556798 NKX2-3Q8TAU0 364 aa20.73■□□□□ 0.91
SHMT2-225ENST00000556798 STAG1Q8WVM7 1258 aa20.73■□□□□ 0.91
SHMT2-225ENST00000556798 MAP4K1Q92918 833 aa20.73■□□□□ 0.91
SHMT2-225ENST00000556798 PLIN4Q96Q06 1357 aa20.72■□□□□ 0.91
SHMT2-225ENST00000556798 A0A1W2PRG0 241 aa20.72■□□□□ 0.91
SHMT2-225ENST00000556798 ORC4O43929 436 aa20.72■□□□□ 0.91
SHMT2-225ENST00000556798 ATP2B2Q01814 1243 aa20.72■□□□□ 0.91
SHMT2-225ENST00000556798 TREML2Q5T2D2 321 aa20.72■□□□□ 0.91
SHMT2-225ENST00000556798 GPAT2Q6NUI2 795 aa20.72■□□□□ 0.91
SHMT2-225ENST00000556798 TSPY2A6NKD2 308 aa20.71■□□□□ 0.91
SHMT2-225ENST00000556798 CYP21A2P08686 494 aa20.71■□□□□ 0.91
SHMT2-225ENST00000556798 EEF2P13639 858 aaKnown RBP20.71■□□□□ 0.91
SHMT2-225ENST00000556798 SH3D19Q5HYK7 790 aa20.71■□□□□ 0.91
SHMT2-225ENST00000556798 OTUD7BQ6GQQ9 843 aa20.71■□□□□ 0.91
SHMT2-225ENST00000556798 FASTKD5Q7L8L6 764 aaKnown RBP20.71■□□□□ 0.91
SHMT2-225ENST00000556798 SIAH1Q8IUQ4 282 aa20.71■□□□□ 0.91
SHMT2-225ENST00000556798 RNF41Q9H4P4 317 aaPredicted RBP20.71■□□□□ 0.91
SHMT2-225ENST00000556798 KANSL2Q9H9L4 492 aa20.71■□□□□ 0.91
SHMT2-225ENST00000556798 TAF6LQ9Y6J9 622 aa20.71■□□□□ 0.91
SHMT2-225ENST00000556798 CASP8AP2Q9UKL3 1982 aa20.71■□□□□ 0.91
SHMT2-225ENST00000556798 PARP14Q460N5 1801 aa20.7■□□□□ 0.9
SHMT2-225ENST00000556798 IGKV6D-41A0A0C4DH26 115 aa20.7■□□□□ 0.9
SHMT2-225ENST00000556798 PDHXO00330 501 aa20.7■□□□□ 0.9
SHMT2-225ENST00000556798 NMT2O60551 498 aa20.7■□□□□ 0.9
SHMT2-225ENST00000556798 TBC1D8O95759 1140 aa20.7■□□□□ 0.9
SHMT2-225ENST00000556798 ANKRD23Q86SG2 305 aa20.7■□□□□ 0.9
SHMT2-225ENST00000556798 PROCA1Q8NCQ7 364 aaPredicted RBP20.7■□□□□ 0.9
SHMT2-225ENST00000556798 NEDD1Q8NHV4 660 aa20.7■□□□□ 0.9
SHMT2-225ENST00000556798 CEP95Q96GE4 821 aa20.7■□□□□ 0.9
SHMT2-225ENST00000556798 R3HDMLQ9H3Y0 253 aa20.7■□□□□ 0.9
SHMT2-225ENST00000556798 ARHGEF10LQ9HCE6 1279 aa20.7■□□□□ 0.9
SHMT2-225ENST00000556798 EMILIN3Q9NT22 766 aa20.7■□□□□ 0.9
SHMT2-225ENST00000556798 SAGE1Q9NXZ1 904 aa20.7■□□□□ 0.9
SHMT2-225ENST00000556798 TMOD4Q9NZQ9 345 aa20.7■□□□□ 0.9
SHMT2-225ENST00000556798 C19orf81C9J6K1 198 aa20.69■□□□□ 0.9
SHMT2-225ENST00000556798 CA12O43570 354 aa20.69■□□□□ 0.9
SHMT2-225ENST00000556798 ALDH1A1P00352 501 aa20.69■□□□□ 0.9
SHMT2-225ENST00000556798 CRHR2Q13324 411 aa20.69■□□□□ 0.9
SHMT2-225ENST00000556798 TAF1CQ15572 869 aaPredicted RBP20.69■□□□□ 0.9
SHMT2-225ENST00000556798 USP17L2Q6R6M4 530 aa20.69■□□□□ 0.9
SHMT2-225ENST00000556798 KIAA1683Q9H0B3 1180 aa20.69■□□□□ 0.9
SHMT2-225ENST00000556798 AGTPBP1Q9UPW5 1226 aa20.69■□□□□ 0.9
SHMT2-225ENST00000556798 B4E1Z4 1266 aa20.68■□□□□ 0.9
SHMT2-225ENST00000556798 HSPA8P11142 646 aaKnown RBP20.68■□□□□ 0.9
SHMT2-225ENST00000556798 PCP11498 1178 aaKnown RBP20.68■□□□□ 0.9
SHMT2-225ENST00000556798 IL17RBQ9NRM6 502 aa20.68■□□□□ 0.9
SHMT2-225ENST00000556798 USP14P54578 494 aa20.67■□□□□ 0.9
SHMT2-225ENST00000556798 KIAA1755Q5JYT7 1200 aa20.67■□□□□ 0.9
SHMT2-225ENST00000556798 STOX1Q6ZVD7 989 aa20.67■□□□□ 0.9
SHMT2-225ENST00000556798 ESR2Q92731 530 aa20.67■□□□□ 0.9
SHMT2-225ENST00000556798 C12orf42Q96LP6 360 aa20.67■□□□□ 0.9
SHMT2-225ENST00000556798 SH2D4AQ9H788 454 aa20.67■□□□□ 0.9
SHMT2-225ENST00000556798 ZCCHC17Q9NP64 241 aaKnown RBP20.67■□□□□ 0.9
SHMT2-225ENST00000556798 MTMR4Q9NYA4 1195 aa20.67■□□□□ 0.9
SHMT2-225ENST00000556798 TMX2Q9Y320 296 aa20.67■□□□□ 0.9
SHMT2-225ENST00000556798 SLC27A2O14975 620 aa20.66■□□□□ 0.9
SHMT2-225ENST00000556798 KDM4AO75164 1064 aa20.66■□□□□ 0.9
SHMT2-225ENST00000556798 CYP2C8P10632 490 aa20.66■□□□□ 0.9
SHMT2-225ENST00000556798 VCAM1P19320 739 aa20.66■□□□□ 0.9
SHMT2-225ENST00000556798 CREB3L3Q68CJ9 461 aa20.66■□□□□ 0.9
SHMT2-225ENST00000556798 SPICE1Q8N0Z3 855 aa20.66■□□□□ 0.9
SHMT2-225ENST00000556798 LRRC47Q8N1G4 583 aaKnown RBP20.66■□□□□ 0.9
SHMT2-225ENST00000556798 NYAP2Q9P242 653 aa20.66■□□□□ 0.9
SHMT2-225ENST00000556798 CLIP2Q9UDT6 1046 aa20.66■□□□□ 0.9
SHMT2-225ENST00000556798 ZSWIM8A7E2V4 1837 aa20.66■□□□□ 0.9
SHMT2-225ENST00000556798 RLFQ13129 1914 aa20.66■□□□□ 0.9
SHMT2-225ENST00000556798 E7EWF7 191 aa20.65■□□□□ 0.9
SHMT2-225ENST00000556798 RAD21O60216 631 aa20.65■□□□□ 0.9
SHMT2-225ENST00000556798 TTLL1O95922 423 aa20.65■□□□□ 0.9
SHMT2-225ENST00000556798 CTCFP49711 727 aaPredicted RBP20.65■□□□□ 0.9
SHMT2-225ENST00000556798 LBX1P52954 281 aa20.65■□□□□ 0.9
SHMT2-225ENST00000556798 NECTIN1Q15223 517 aa20.65■□□□□ 0.9
SHMT2-225ENST00000556798 PARK7Q99497 189 aaKnown RBP20.65■□□□□ 0.9
SHMT2-225ENST00000556798 ZKSCAN3Q9BRR0 538 aa20.65■□□□□ 0.9
SHMT2-225ENST00000556798 VCPKMTQ9H867 229 aa20.65■□□□□ 0.9
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms