RNA–Protein interactions for RNA: ENST00000556689.5

SHMT2-223, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 768 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-223ENST00000556689 CNMDO75829 334 aa15.47■□□□□ 0.07
SHMT2-223ENST00000556689 PTPREP23469 700 aa15.47■□□□□ 0.07
SHMT2-223ENST00000556689 USP5P45974 858 aa15.47■□□□□ 0.07
SHMT2-223ENST00000556689 USP14P54578 494 aa15.47■□□□□ 0.07
SHMT2-223ENST00000556689 ATP2B2Q01814 1243 aa15.47■□□□□ 0.07
SHMT2-223ENST00000556689 DDX60LQ5H9U9 1706 aaKnown RBP15.47■□□□□ 0.07
SHMT2-223ENST00000556689 WDR78Q5VTH9 848 aa15.47■□□□□ 0.07
SHMT2-223ENST00000556689 PIH1D3Q9NQM4 214 aaKnown RBP15.47■□□□□ 0.07
SHMT2-223ENST00000556689 NDUFB9Q9Y6M9 179 aa15.47■□□□□ 0.07
SHMT2-223ENST00000556689 POTEB2H3BUK9 544 aa15.46■□□□□ 0.07
SHMT2-223ENST00000556689 MSCO60682 206 aa15.46■□□□□ 0.07
SHMT2-223ENST00000556689 SURF6O75683 361 aaKnown RBP15.46■□□□□ 0.07
SHMT2-223ENST00000556689 CNGA1P29973 690 aa15.46■□□□□ 0.07
SHMT2-223ENST00000556689 ATP8B2P98198 1209 aa15.46■□□□□ 0.07
SHMT2-223ENST00000556689 POLA2Q14181 598 aa15.46■□□□□ 0.07
SHMT2-223ENST00000556689 RAB3GAP1Q15042 981 aa15.46■□□□□ 0.07
SHMT2-223ENST00000556689 CERKLQ49MI3 558 aaPredicted RBP15.46■□□□□ 0.07
SHMT2-223ENST00000556689 FAM109BQ6ICB4 259 aaPredicted RBP15.46■□□□□ 0.07
SHMT2-223ENST00000556689 CERS3Q8IU89 383 aa15.46■□□□□ 0.07
SHMT2-223ENST00000556689 LPAR1Q92633 364 aa15.46■□□□□ 0.07
SHMT2-223ENST00000556689 CLUAP1Q96AJ1 413 aa15.46■□□□□ 0.07
SHMT2-223ENST00000556689 KIAA1683Q9H0B3 1180 aa15.46■□□□□ 0.07
SHMT2-223ENST00000556689 FLRT1Q9NZU1 646 aa15.46■□□□□ 0.07
SHMT2-223ENST00000556689 DDX20Q9UHI6 824 aaKnown RBP15.46■□□□□ 0.07
SHMT2-223ENST00000556689 SERPINB13Q9UIV8 391 aa15.46■□□□□ 0.07
SHMT2-223ENST00000556689 TNNQ9UQP3 1299 aa15.46■□□□□ 0.07
SHMT2-223ENST00000556689 IVNS1ABPQ9Y6Y0 642 aa15.46■□□□□ 0.07
SHMT2-223ENST00000556689 ATAD5Q96QE3 1844 aa15.45■□□□□ 0.06
SHMT2-223ENST00000556689 DNAH12Q6ZR08 3092 aa15.45■□□□□ 0.06
SHMT2-223ENST00000556689 HOXC6P09630 235 aa15.45■□□□□ 0.06
SHMT2-223ENST00000556689 TTC6Q86TZ1 520 aa15.45■□□□□ 0.06
SHMT2-223ENST00000556689 SSH3Q8TE77 659 aa15.45■□□□□ 0.06
SHMT2-223ENST00000556689 CABP5Q9NP86 173 aa15.45■□□□□ 0.06
SHMT2-223ENST00000556689 BCAR3O75815 825 aa15.44■□□□□ 0.06
SHMT2-223ENST00000556689 IDH1O75874 414 aaKnown RBP15.44■□□□□ 0.06
SHMT2-223ENST00000556689 ATN1P54259 1190 aaPredicted RBP15.44■□□□□ 0.06
SHMT2-223ENST00000556689 GRB14Q14449 540 aa15.44■□□□□ 0.06
SHMT2-223ENST00000556689 ABCB5Q2M3G0 1257 aa15.44■□□□□ 0.06
SHMT2-223ENST00000556689 LBX2Q6XYB7 198 aa15.44■□□□□ 0.06
SHMT2-223ENST00000556689 MIGA1Q8NAN2 632 aa15.44■□□□□ 0.06
SHMT2-223ENST00000556689 NPLOC4Q8TAT6 608 aa15.44■□□□□ 0.06
SHMT2-223ENST00000556689 ACER1Q8TDN7 264 aa15.44■□□□□ 0.06
SHMT2-223ENST00000556689 EHD4Q9H223 541 aa15.44■□□□□ 0.06
SHMT2-223ENST00000556689 BTBD7Q9P203 1132 aa15.44■□□□□ 0.06
SHMT2-223ENST00000556689 PRKAG2Q9UGJ0 569 aa15.44■□□□□ 0.06
SHMT2-223ENST00000556689 DNM1LO00429 736 aa15.43■□□□□ 0.06
SHMT2-223ENST00000556689 VCAM1P19320 739 aa15.43■□□□□ 0.06
SHMT2-223ENST00000556689 CYP2C19P33261 490 aa15.43■□□□□ 0.06
SHMT2-223ENST00000556689 TMEM57Q8N5G2 664 aa15.43■□□□□ 0.06
SHMT2-223ENST00000556689 MAGEB6Q8N7X4 407 aa15.43■□□□□ 0.06
SHMT2-223ENST00000556689 CCDC8Q9H0W5 538 aaPredicted RBP15.43■□□□□ 0.06
SHMT2-223ENST00000556689 DBNLQ9UJU6 430 aaKnown RBP15.43■□□□□ 0.06
SHMT2-223ENST00000556689 LAMA2P24043 3122 aaKnown RBP15.43■□□□□ 0.06
SHMT2-223ENST00000556689 UNC80Q8N2C7 3258 aa15.42■□□□□ 0.06
SHMT2-223ENST00000556689 MAP3K12Q12852 859 aa15.42■□□□□ 0.06
SHMT2-223ENST00000556689 DPP9Q86TI2 863 aa15.42■□□□□ 0.06
SHMT2-223ENST00000556689 PHF6Q8IWS0 365 aaKnown RBP eCLIP15.42■□□□□ 0.06
SHMT2-223ENST00000556689 ARRDC4Q8NCT1 418 aa15.42■□□□□ 0.06
SHMT2-223ENST00000556689 FAM161BQ96MY7 647 aa15.42■□□□□ 0.06
SHMT2-223ENST00000556689 COL25A1Q9BXS0 654 aaPredicted RBP15.42■□□□□ 0.06
SHMT2-223ENST00000556689 RPAP3Q9H6T3 665 aaPredicted RBP15.42■□□□□ 0.06
SHMT2-223ENST00000556689 HOXC10Q9NYD6 342 aa15.42■□□□□ 0.06
SHMT2-223ENST00000556689 NOP58Q9Y2X3 529 aaKnown RBP15.42■□□□□ 0.06
SHMT2-223ENST00000556689 SIPA1L1O43166 1804 aa15.42■□□□□ 0.06
SHMT2-223ENST00000556689 SPDYE16A6NNV3 312 aaPredicted RBP15.41■□□□□ 0.06
SHMT2-223ENST00000556689 STRNO43815 780 aa15.41■□□□□ 0.06
SHMT2-223ENST00000556689 PLCD1P51178 756 aa15.41■□□□□ 0.06
SHMT2-223ENST00000556689 RTP1P59025 263 aa15.41■□□□□ 0.06
SHMT2-223ENST00000556689 COG2Q14746 738 aa15.41■□□□□ 0.06
SHMT2-223ENST00000556689 TMED8Q6PL24 325 aaPredicted RBP15.41■□□□□ 0.06
SHMT2-223ENST00000556689 TRPV1Q8NER1 839 aa15.41■□□□□ 0.06
SHMT2-223ENST00000556689 GUCD1Q96NT3 240 aa15.41■□□□□ 0.06
SHMT2-223ENST00000556689 IGHA2P01877 340 aa15.4■□□□□ 0.06
SHMT2-223ENST00000556689 POLR3DP05423 398 aaPredicted RBP15.4■□□□□ 0.06
SHMT2-223ENST00000556689 SHMT1P34896 483 aa15.4■□□□□ 0.06
SHMT2-223ENST00000556689 GJC2Q5T442 439 aaPredicted RBP15.4■□□□□ 0.06
SHMT2-223ENST00000556689 ZNF697Q5TEC3 545 aa15.4■□□□□ 0.06
SHMT2-223ENST00000556689 ZKSCAN2Q63HK3 967 aa15.4■□□□□ 0.06
SHMT2-223ENST00000556689 SLC39A5Q6ZMH5 540 aa15.4■□□□□ 0.06
SHMT2-223ENST00000556689 EAF2Q96CJ1 260 aaPredicted RBP15.4■□□□□ 0.06
SHMT2-223ENST00000556689 TLR7Q9NYK1 1049 aaKnown RBP15.4■□□□□ 0.06
SHMT2-223ENST00000556689 ATP11BQ9Y2G3 1177 aa15.4■□□□□ 0.06
SHMT2-223ENST00000556689 KBTBD13C9JR72 458 aa15.39■□□□□ 0.05
SHMT2-223ENST00000556689 CYBAP13498 195 aa15.39■□□□□ 0.05
SHMT2-223ENST00000556689 ADORA2AP29274 412 aa15.39■□□□□ 0.05
SHMT2-223ENST00000556689 GUCY1A2P33402 732 aa15.39■□□□□ 0.05
SHMT2-223ENST00000556689 SEPT2Q15019 361 aa15.39■□□□□ 0.05
SHMT2-223ENST00000556689 OLFML2BQ68BL8 750 aa15.39■□□□□ 0.05
SHMT2-223ENST00000556689 MOV10L1Q9BXT6 1211 aaKnown RBP15.39■□□□□ 0.05
SHMT2-223ENST00000556689 ANTXR1Q9H6X2 564 aa15.39■□□□□ 0.05
SHMT2-223ENST00000556689 SHHQ15465 462 aa15.38■□□□□ 0.05
SHMT2-223ENST00000556689 SPATC1LQ9H0A9 340 aa15.38■□□□□ 0.05
SHMT2-223ENST00000556689 C1orf115Q9H7X2 142 aa15.38■□□□□ 0.05
SHMT2-223ENST00000556689 SLC5A4Q9NY91 659 aa15.38■□□□□ 0.05
SHMT2-223ENST00000556689 A0A1W2PRG0 241 aa15.37■□□□□ 0.05
SHMT2-223ENST00000556689 MPHOSPH10O00566 681 aaKnown RBP15.37■□□□□ 0.05
SHMT2-223ENST00000556689 SEPT4O43236 478 aa15.37■□□□□ 0.05
SHMT2-223ENST00000556689 MYCNP04198 464 aaPredicted RBP15.37■□□□□ 0.05
SHMT2-223ENST00000556689 ERCC3P19447 782 aa15.37■□□□□ 0.05
SHMT2-223ENST00000556689 GABPAQ06546 454 aa15.37■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 16 ms