RNA–Protein interactions for RNA: ENST00000554467.5

SHMT2-212, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 3,416 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-212ENST00000554467 FGRP09769 529 aa13.47□□□□□ -0.25
SHMT2-212ENST00000554467 NPR1P16066 1061 aa13.47□□□□□ -0.25
SHMT2-212ENST00000554467 NOM1Q5C9Z4 860 aaKnown RBP13.47□□□□□ -0.25
SHMT2-212ENST00000554467 DCAF8Q5TAQ9 597 aa13.47□□□□□ -0.25
SHMT2-212ENST00000554467 C15orf52Q6ZUT6 534 aaKnown RBP13.47□□□□□ -0.25
SHMT2-212ENST00000554467 CCDC196A0A1B0GTZ2 297 aa13.46□□□□□ -0.25
SHMT2-212ENST00000554467 ORC4O43929 436 aa13.46□□□□□ -0.25
SHMT2-212ENST00000554467 KINO60870 393 aaKnown RBP13.46□□□□□ -0.25
SHMT2-212ENST00000554467 AKAP17AQ02040 695 aaKnown RBP13.46□□□□□ -0.25
SHMT2-212ENST00000554467 RCSD1Q6JBY9 416 aa13.46□□□□□ -0.25
SHMT2-212ENST00000554467 C2CD5Q86YS7 1000 aa13.46□□□□□ -0.25
SHMT2-212ENST00000554467 POLR3EQ9NVU0 708 aa13.46□□□□□ -0.25
SHMT2-212ENST00000554467 STX8Q9UNK0 236 aa13.46□□□□□ -0.25
SHMT2-212ENST00000554467 MMP1P03956 469 aa13.46□□□□□ -0.25
SHMT2-212ENST00000554467 SRBD1Q8N5C6 995 aaKnown RBP13.46□□□□□ -0.25
SHMT2-212ENST00000554467 MRPS27Q92552 414 aaKnown RBP13.46□□□□□ -0.25
SHMT2-212ENST00000554467 PCDHAC2Q9Y5I4 1007 aa13.46□□□□□ -0.25
SHMT2-212ENST00000554467 RIOK3O14730 519 aaKnown RBP13.46□□□□□ -0.26
SHMT2-212ENST00000554467 DEXIO95424 95 aa13.46□□□□□ -0.26
SHMT2-212ENST00000554467 LDHCP07864 332 aa13.46□□□□□ -0.26
SHMT2-212ENST00000554467 FAM160A1Q05DH4 1040 aa13.46□□□□□ -0.26
SHMT2-212ENST00000554467 PKN1Q16512 942 aa13.46□□□□□ -0.26
SHMT2-212ENST00000554467 SBK1Q52WX2 424 aa13.46□□□□□ -0.26
SHMT2-212ENST00000554467 ENGASEQ8NFI3 743 aa13.46□□□□□ -0.26
SHMT2-212ENST00000554467 CPVLQ9H3G5 476 aa13.46□□□□□ -0.26
SHMT2-212ENST00000554467 TSPY3P0CV98 308 aa13.45□□□□□ -0.26
SHMT2-212ENST00000554467 TSPY8P0CW00 308 aa13.45□□□□□ -0.26
SHMT2-212ENST00000554467 NOSTRINQ8IVI9 506 aa13.45□□□□□ -0.26
SHMT2-212ENST00000554467 STK36Q9NRP7 1315 aa13.45□□□□□ -0.26
SHMT2-212ENST00000554467 ADAMTS3O15072 1205 aa13.45□□□□□ -0.26
SHMT2-212ENST00000554467 PDE6BP35913 854 aa13.45□□□□□ -0.26
SHMT2-212ENST00000554467 IRX5P78411 483 aaPredicted RBP13.45□□□□□ -0.26
SHMT2-212ENST00000554467 FUT2Q10981 343 aa13.45□□□□□ -0.26
SHMT2-212ENST00000554467 EARS2Q5JPH6 523 aaKnown RBP13.45□□□□□ -0.26
SHMT2-212ENST00000554467 ADALQ6DHV7 355 aa13.45□□□□□ -0.26
SHMT2-212ENST00000554467 STAG2Q8N3U4 1231 aa13.45□□□□□ -0.26
SHMT2-212ENST00000554467 KCNG4Q8TDN1 519 aa13.45□□□□□ -0.26
SHMT2-212ENST00000554467 SDF4Q9BRK5 362 aa13.45□□□□□ -0.26
SHMT2-212ENST00000554467 CABP5Q9NP86 173 aa13.45□□□□□ -0.26
SHMT2-212ENST00000554467 TTF2Q9UNY4 1162 aaKnown RBP13.45□□□□□ -0.26
SHMT2-212ENST00000554467 DAGLAQ9Y4D2 1042 aa13.45□□□□□ -0.26
SHMT2-212ENST00000554467 FLT1P17948 1338 aa13.45□□□□□ -0.26
SHMT2-212ENST00000554467 TOB1P50616 345 aaPredicted RBP13.45□□□□□ -0.26
SHMT2-212ENST00000554467 RHBDL3P58872 404 aa13.45□□□□□ -0.26
SHMT2-212ENST00000554467 SAFBQ15424 915 aaKnown RBP eCLIP13.45□□□□□ -0.26
SHMT2-212ENST00000554467 AXDND1Q5T1B0 1012 aaPredicted RBP13.45□□□□□ -0.26
SHMT2-212ENST00000554467 ATL3Q6DD88 541 aa13.45□□□□□ -0.26
SHMT2-212ENST00000554467 ISM2Q6H9L7 571 aa13.45□□□□□ -0.26
SHMT2-212ENST00000554467 KIAA1551Q9HCM1 1747 aa13.44□□□□□ -0.26
SHMT2-212ENST00000554467 GPR75-ASB3A0A0A6YYF3 556 aa13.44□□□□□ -0.26
SHMT2-212ENST00000554467 GOLGA8HP0CJ92 632 aa13.44□□□□□ -0.26
SHMT2-212ENST00000554467 PPP4CP60510 307 aa13.44□□□□□ -0.26
SHMT2-212ENST00000554467 GRIN1Q05586 938 aa13.44□□□□□ -0.26
SHMT2-212ENST00000554467 FMR1NBQ8N0W7 255 aaPredicted RBP13.44□□□□□ -0.26
SHMT2-212ENST00000554467 CTCFLQ8NI51 663 aaPredicted RBP13.44□□□□□ -0.26
SHMT2-212ENST00000554467 WASF1Q92558 559 aa13.44□□□□□ -0.26
SHMT2-212ENST00000554467 CBX8Q9HC52 389 aa13.44□□□□□ -0.26
SHMT2-212ENST00000554467 MAST2Q6P0Q8 1798 aa13.44□□□□□ -0.26
SHMT2-212ENST00000554467 BIN1O00499 593 aa13.44□□□□□ -0.26
SHMT2-212ENST00000554467 YEATS4O95619 227 aa13.44□□□□□ -0.26
SHMT2-212ENST00000554467 CACNB3P54284 484 aa13.44□□□□□ -0.26
SHMT2-212ENST00000554467 SLC39A14Q15043 492 aa13.44□□□□□ -0.26
SHMT2-212ENST00000554467 C11orf57Q6ZUT1 292 aaPredicted RBP13.44□□□□□ -0.26
SHMT2-212ENST00000554467 CLEC10AQ8IUN9 316 aa13.44□□□□□ -0.26
SHMT2-212ENST00000554467 AMOTL1Q8IY63 956 aa13.44□□□□□ -0.26
SHMT2-212ENST00000554467 DRC7Q8IY82 874 aa13.44□□□□□ -0.26
SHMT2-212ENST00000554467 ZNF444Q8N0Y2 327 aaPredicted RBP13.44□□□□□ -0.26
SHMT2-212ENST00000554467 MASTLQ96GX5 879 aa13.44□□□□□ -0.26
SHMT2-212ENST00000554467 MAP3K14Q99558 947 aa13.44□□□□□ -0.26
SHMT2-212ENST00000554467 KAT14Q9H8E8 782 aa13.44□□□□□ -0.26
SHMT2-212ENST00000554467 PCDHB6Q9Y5E3 794 aa13.44□□□□□ -0.26
SHMT2-212ENST00000554467 TMTC3Q6ZXV5 915 aa13.44□□□□□ -0.26
SHMT2-212ENST00000554467 DEFB132Q7Z7B7 95 aa13.44□□□□□ -0.26
SHMT2-212ENST00000554467 MYH6P13533 1939 aa13.43□□□□□ -0.26
SHMT2-212ENST00000554467 CTIFO43310 598 aaKnown RBP13.43□□□□□ -0.26
SHMT2-212ENST00000554467 SLFN14P0C7P3 912 aa13.43□□□□□ -0.26
SHMT2-212ENST00000554467 PFKFB1P16118 471 aa13.43□□□□□ -0.26
SHMT2-212ENST00000554467 ALDH1B1P30837 517 aa13.43□□□□□ -0.26
SHMT2-212ENST00000554467 PTPAQ15257 358 aa13.43□□□□□ -0.26
SHMT2-212ENST00000554467 PNMA1Q8ND90 353 aa13.43□□□□□ -0.26
SHMT2-212ENST00000554467 GPKOWQ92917 476 aaPredicted RBP eCLIP13.43□□□□□ -0.26
SHMT2-212ENST00000554467 NID2Q14112 1375 aa13.43□□□□□ -0.26
SHMT2-212ENST00000554467 WNT7AO00755 349 aa13.43□□□□□ -0.26
SHMT2-212ENST00000554467 RASA1P20936 1047 aa13.43□□□□□ -0.26
SHMT2-212ENST00000554467 EIF6P56537 245 aaKnown RBP13.43□□□□□ -0.26
SHMT2-212ENST00000554467 MTA3Q9BTC8 594 aa13.43□□□□□ -0.26
SHMT2-212ENST00000554467 TMX4Q9H1E5 349 aaPredicted RBP13.43□□□□□ -0.26
SHMT2-212ENST00000554467 DDX4Q9NQI0 724 aaKnown RBP13.43□□□□□ -0.26
SHMT2-212ENST00000554467 COL11A2P13942 1736 aaPredicted RBP13.43□□□□□ -0.26
SHMT2-212ENST00000554467 CDK8P49336 464 aa13.42□□□□□ -0.26
SHMT2-212ENST00000554467 SHC4Q6S5L8 630 aa13.42□□□□□ -0.26
SHMT2-212ENST00000554467 KIAA0825Q8IV33 1275 aa13.42□□□□□ -0.26
SHMT2-212ENST00000554467 FAM200AQ8TCP9 573 aa13.42□□□□□ -0.26
SHMT2-212ENST00000554467 RNF26Q9BY78 433 aaPredicted RBP13.42□□□□□ -0.26
SHMT2-212ENST00000554467 COA1Q9GZY4 146 aa13.42□□□□□ -0.26
SHMT2-212ENST00000554467 KCNF1Q9H3M0 494 aa13.42□□□□□ -0.26
SHMT2-212ENST00000554467 CNTNAP5Q8WYK1 1306 aa13.42□□□□□ -0.26
SHMT2-212ENST00000554467 LAMB1P07942 1786 aa13.42□□□□□ -0.26
SHMT2-212ENST00000554467 H0YIN7 160 aa13.42□□□□□ -0.26
SHMT2-212ENST00000554467 PCP11498 1178 aaKnown RBP13.42□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms