RNA–Protein interactions for RNA: ENST00000553308.1

SYNE2-209, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 4

Gene SYNE2, Length 557 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-209ENST00000553308 USP17L20D6RJB6 530 aa11.12□□□□□ -0.63
SYNE2-209ENST00000553308 POTEB2H3BUK9 544 aa11.12□□□□□ -0.63
SYNE2-209ENST00000553308 ATN1P54259 1190 aaPredicted RBP11.12□□□□□ -0.63
SYNE2-209ENST00000553308 USP17L24Q0WX57 530 aa11.12□□□□□ -0.63
SYNE2-209ENST00000553308 CCDC158Q5M9N0 1113 aa11.12□□□□□ -0.63
SYNE2-209ENST00000553308 MFSD14CQ5VZR4 134 aa11.12□□□□□ -0.63
SYNE2-209ENST00000553308 PHF6Q8IWS0 365 aaKnown RBP eCLIP11.12□□□□□ -0.63
SYNE2-209ENST00000553308 MIGA1Q8NAN2 632 aa11.12□□□□□ -0.63
SYNE2-209ENST00000553308 NPLOC4Q8TAT6 608 aa11.12□□□□□ -0.63
SYNE2-209ENST00000553308 CLUAP1Q96AJ1 413 aa11.12□□□□□ -0.63
SYNE2-209ENST00000553308 GPR108Q9NPR9 543 aa11.12□□□□□ -0.63
SYNE2-209ENST00000553308 BTBD7Q9P203 1132 aa11.12□□□□□ -0.63
SYNE2-209ENST00000553308 DDX20Q9UHI6 824 aaKnown RBP11.12□□□□□ -0.63
SYNE2-209ENST00000553308 SLC15A5A6NIM6 579 aa11.11□□□□□ -0.63
SYNE2-209ENST00000553308 VCAM1P19320 739 aa11.11□□□□□ -0.63
SYNE2-209ENST00000553308 CYP7A1P22680 504 aa11.11□□□□□ -0.63
SYNE2-209ENST00000553308 PTPREP23469 700 aa11.11□□□□□ -0.63
SYNE2-209ENST00000553308 CNGA1P29973 690 aa11.11□□□□□ -0.63
SYNE2-209ENST00000553308 CYP2C19P33261 490 aa11.11□□□□□ -0.63
SYNE2-209ENST00000553308 CCNA1P78396 465 aa11.11□□□□□ -0.63
SYNE2-209ENST00000553308 OS9Q13438 667 aaPredicted RBP11.11□□□□□ -0.63
SYNE2-209ENST00000553308 POLA2Q14181 598 aa11.11□□□□□ -0.63
SYNE2-209ENST00000553308 GRB14Q14449 540 aa11.11□□□□□ -0.63
SYNE2-209ENST00000553308 RAB3GAP1Q15042 981 aa11.11□□□□□ -0.63
SYNE2-209ENST00000553308 FAM109BQ6ICB4 259 aaPredicted RBP11.11□□□□□ -0.63
SYNE2-209ENST00000553308 TATDN1Q6P1N9 297 aa11.11□□□□□ -0.63
SYNE2-209ENST00000553308 ATF7IPQ6VMQ6 1270 aa11.11□□□□□ -0.63
SYNE2-209ENST00000553308 CATSPERGQ6ZRH7 1159 aa11.11□□□□□ -0.63
SYNE2-209ENST00000553308 TRPV1Q8NER1 839 aa11.11□□□□□ -0.63
SYNE2-209ENST00000553308 ACER1Q8TDN7 264 aa11.11□□□□□ -0.63
SYNE2-209ENST00000553308 FRAT1Q92837 279 aaPredicted RBP11.11□□□□□ -0.63
SYNE2-209ENST00000553308 LBHD1Q9BQE6 289 aaPredicted RBP11.11□□□□□ -0.63
SYNE2-209ENST00000553308 TLR7Q9NYK1 1049 aaKnown RBP11.11□□□□□ -0.63
SYNE2-209ENST00000553308 SPDYE16A6NNV3 312 aaPredicted RBP11.1□□□□□ -0.63
SYNE2-209ENST00000553308 DNM1LO00429 736 aa11.1□□□□□ -0.63
SYNE2-209ENST00000553308 IDH1O75874 414 aaKnown RBP11.1□□□□□ -0.63
SYNE2-209ENST00000553308 GLRX3O76003 335 aaKnown RBP11.1□□□□□ -0.63
SYNE2-209ENST00000553308 HOXC6P09630 235 aa11.1□□□□□ -0.63
SYNE2-209ENST00000553308 CYBAP13498 195 aa11.1□□□□□ -0.63
SYNE2-209ENST00000553308 USP5P45974 858 aa11.1□□□□□ -0.63
SYNE2-209ENST00000553308 RTP1P59025 263 aa11.1□□□□□ -0.63
SYNE2-209ENST00000553308 ATP2B2Q01814 1243 aa11.1□□□□□ -0.63
SYNE2-209ENST00000553308 LBX2Q6XYB7 198 aa11.1□□□□□ -0.63
SYNE2-209ENST00000553308 LPAR1Q92633 364 aa11.1□□□□□ -0.63
SYNE2-209ENST00000553308 ZNF512BQ96KM6 892 aaPredicted RBP11.1□□□□□ -0.63
SYNE2-209ENST00000553308 KIAA1683Q9H0B3 1180 aa11.1□□□□□ -0.63
SYNE2-209ENST00000553308 EHD4Q9H223 541 aa11.1□□□□□ -0.63
SYNE2-209ENST00000553308 RPAP3Q9H6T3 665 aaPredicted RBP11.1□□□□□ -0.63
SYNE2-209ENST00000553308 SERPINB13Q9UIV8 391 aa11.1□□□□□ -0.63
SYNE2-209ENST00000553308 DBNLQ9UJU6 430 aaKnown RBP11.1□□□□□ -0.63
SYNE2-209ENST00000553308 IVNS1ABPQ9Y6Y0 642 aa11.1□□□□□ -0.63
SYNE2-209ENST00000553308 ZNF236Q9UL36 1845 aa11.09□□□□□ -0.63
SYNE2-209ENST00000553308 IPO8O15397 1037 aaKnown RBP11.09□□□□□ -0.63
SYNE2-209ENST00000553308 MSCO60682 206 aa11.09□□□□□ -0.63
SYNE2-209ENST00000553308 BCAR3O75815 825 aa11.09□□□□□ -0.63
SYNE2-209ENST00000553308 USP14P54578 494 aa11.09□□□□□ -0.63
SYNE2-209ENST00000553308 ABCB5Q2M3G0 1257 aa11.09□□□□□ -0.63
SYNE2-209ENST00000553308 CERKLQ49MI3 558 aaPredicted RBP11.09□□□□□ -0.63
SYNE2-209ENST00000553308 ZNF697Q5TEC3 545 aa11.09□□□□□ -0.63
SYNE2-209ENST00000553308 TMEM57Q8N5G2 664 aa11.09□□□□□ -0.63
SYNE2-209ENST00000553308 MAGEB6Q8N7X4 407 aa11.09□□□□□ -0.63
SYNE2-209ENST00000553308 SSH3Q8TE77 659 aa11.09□□□□□ -0.63
SYNE2-209ENST00000553308 C1orf115Q9H7X2 142 aa11.09□□□□□ -0.63
SYNE2-209ENST00000553308 ATP11BQ9Y2G3 1177 aa11.09□□□□□ -0.63
SYNE2-209ENST00000553308 RLFQ13129 1914 aa11.09□□□□□ -0.63
SYNE2-209ENST00000553308 IGSF3O75054 1194 aa11.08□□□□□ -0.64
SYNE2-209ENST00000553308 SURF6O75683 361 aaKnown RBP11.08□□□□□ -0.64
SYNE2-209ENST00000553308 IGHA2P01877 340 aa11.08□□□□□ -0.64
SYNE2-209ENST00000553308 GUCY1A2P33402 732 aa11.08□□□□□ -0.64
SYNE2-209ENST00000553308 SHMT1P34896 483 aa11.08□□□□□ -0.64
SYNE2-209ENST00000553308 EVX2Q03828 476 aa11.08□□□□□ -0.64
SYNE2-209ENST00000553308 GJC2Q5T442 439 aaPredicted RBP11.08□□□□□ -0.64
SYNE2-209ENST00000553308 ANO1Q5XXA6 986 aa11.08□□□□□ -0.64
SYNE2-209ENST00000553308 CCDC8Q9H0W5 538 aaPredicted RBP11.08□□□□□ -0.64
SYNE2-209ENST00000553308 ANTXR1Q9H6X2 564 aa11.08□□□□□ -0.64
SYNE2-209ENST00000553308 PRKAG2Q9UGJ0 569 aa11.08□□□□□ -0.64
SYNE2-209ENST00000553308 A0A0G2JMZ2 1700 aa11.08□□□□□ -0.64
SYNE2-209ENST00000553308 NAV1Q8NEY1 1877 aa11.08□□□□□ -0.64
SYNE2-209ENST00000553308 CUL9Q8IWT3 2517 aa11.07□□□□□ -0.64
SYNE2-209ENST00000553308 ADORA2AP29274 412 aa11.07□□□□□ -0.64
SYNE2-209ENST00000553308 PLCD1P51178 756 aa11.07□□□□□ -0.64
SYNE2-209ENST00000553308 ATP8B2P98198 1209 aa11.07□□□□□ -0.64
SYNE2-209ENST00000553308 SEPT2Q15019 361 aa11.07□□□□□ -0.64
SYNE2-209ENST00000553308 SHHQ15465 462 aa11.07□□□□□ -0.64
SYNE2-209ENST00000553308 C9orf50Q5SZB4 431 aa11.07□□□□□ -0.64
SYNE2-209ENST00000553308 DPP9Q86TI2 863 aa11.07□□□□□ -0.64
SYNE2-209ENST00000553308 TTC6Q86TZ1 520 aa11.07□□□□□ -0.64
SYNE2-209ENST00000553308 EAF2Q96CJ1 260 aaPredicted RBP11.07□□□□□ -0.64
SYNE2-209ENST00000553308 MOV10L1Q9BXT6 1211 aaKnown RBP11.07□□□□□ -0.64
SYNE2-209ENST00000553308 CABP5Q9NP86 173 aa11.07□□□□□ -0.64
SYNE2-209ENST00000553308 PRDM5Q9NQX1 630 aaPredicted RBP11.07□□□□□ -0.64
SYNE2-209ENST00000553308 A0A1W2PRG0 241 aa11.06□□□□□ -0.64
SYNE2-209ENST00000553308 KBTBD13C9JR72 458 aa11.06□□□□□ -0.64
SYNE2-209ENST00000553308 MYCNP04198 464 aaPredicted RBP11.06□□□□□ -0.64
SYNE2-209ENST00000553308 TRIM60Q495X7 471 aa11.06□□□□□ -0.64
SYNE2-209ENST00000553308 OLFML2BQ68BL8 750 aa11.06□□□□□ -0.64
SYNE2-209ENST00000553308 SLC39A5Q6ZMH5 540 aa11.06□□□□□ -0.64
SYNE2-209ENST00000553308 CERS3Q8IU89 383 aa11.06□□□□□ -0.64
SYNE2-209ENST00000553308 BADQ92934 168 aa11.06□□□□□ -0.64
SYNE2-209ENST00000553308 CDX2Q99626 313 aaPredicted RBP11.06□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms