RNA–Protein interactions for RNA: ENST00000551691.5

LIMA1-208, Transcript of LIM domain and actin binding 1, humanhuman

TSL 3

Gene LIMA1, Length 583 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-208ENST00000551691 PRKAG2Q9UGJ0 569 aa5.38□□□□□ -1.55
LIMA1-208ENST00000551691 WWC3Q9ULE0 1092 aa5.38□□□□□ -1.55
LIMA1-208ENST00000551691 PIK3R4Q99570 1358 aa5.38□□□□□ -1.55
LIMA1-208ENST00000551691 DISP2A7MBM2 1401 aa5.38□□□□□ -1.55
LIMA1-208ENST00000551691 NOS1P29475 1434 aa5.38□□□□□ -1.55
LIMA1-208ENST00000551691 ADGRB3O60242 1522 aa5.38□□□□□ -1.55
LIMA1-208ENST00000551691 NRKQ7Z2Y5 1582 aa5.38□□□□□ -1.55
LIMA1-208ENST00000551691 COL22A1Q8NFW1 1626 aaPredicted RBP5.37□□□□□ -1.55
LIMA1-208ENST00000551691 BTBD11A6QL63 1104 aa5.37□□□□□ -1.55
LIMA1-208ENST00000551691 EREGO14944 169 aa5.37□□□□□ -1.55
LIMA1-208ENST00000551691 PDGFAP04085 211 aa5.37□□□□□ -1.55
LIMA1-208ENST00000551691 DRD2P14416 443 aa5.37□□□□□ -1.55
LIMA1-208ENST00000551691 FAM196AQ6ZSG2 479 aa5.37□□□□□ -1.55
LIMA1-208ENST00000551691 CLEC10AQ8IUN9 316 aa5.37□□□□□ -1.55
LIMA1-208ENST00000551691 GJD3Q8N144 294 aa5.37□□□□□ -1.55
LIMA1-208ENST00000551691 CSRNP1Q96S65 589 aa5.37□□□□□ -1.55
LIMA1-208ENST00000551691 RNF208Q9H0X6 261 aa5.37□□□□□ -1.55
LIMA1-208ENST00000551691 CHRDQ9H2X0 955 aa5.37□□□□□ -1.55
LIMA1-208ENST00000551691 EPB41L3Q9Y2J2 1087 aaPredicted RBP5.37□□□□□ -1.55
LIMA1-208ENST00000551691 RGPD1P0DJD0 1748 aa5.37□□□□□ -1.55
LIMA1-208ENST00000551691 TNS1Q9HBL0 1735 aaKnown RBP5.37□□□□□ -1.55
LIMA1-208ENST00000551691 SOX1O00570 391 aaPredicted RBP5.36□□□□□ -1.55
LIMA1-208ENST00000551691 DLGAP3O95886 979 aa5.36□□□□□ -1.55
LIMA1-208ENST00000551691 MAP4P27816 1152 aaKnown RBP5.36□□□□□ -1.55
LIMA1-208ENST00000551691 C19orf57Q0VDD7 668 aa5.36□□□□□ -1.55
LIMA1-208ENST00000551691 ANKRD34AQ69YU3 496 aa5.36□□□□□ -1.55
LIMA1-208ENST00000551691 DPH6Q7L8W6 267 aa5.36□□□□□ -1.55
LIMA1-208ENST00000551691 HS2ST1Q7LGA3 356 aa5.36□□□□□ -1.55
LIMA1-208ENST00000551691 KRT28Q7Z3Y7 464 aa5.36□□□□□ -1.55
LIMA1-208ENST00000551691 C12orf50Q8NA57 414 aaPredicted RBP5.36□□□□□ -1.55
LIMA1-208ENST00000551691 ASAP3Q8TDY4 903 aa5.36□□□□□ -1.55
LIMA1-208ENST00000551691 OSMRQ99650 979 aa5.36□□□□□ -1.55
LIMA1-208ENST00000551691 ZKSCAN3Q9BRR0 538 aa5.36□□□□□ -1.55
LIMA1-208ENST00000551691 LATS2Q9NRM7 1088 aa5.36□□□□□ -1.55
LIMA1-208ENST00000551691 FOXD3Q9UJU5 478 aaPredicted RBP5.36□□□□□ -1.55
LIMA1-208ENST00000551691 SOX13Q9UN79 622 aa5.36□□□□□ -1.55
LIMA1-208ENST00000551691 TMA7Q9Y2S6 64 aaKnown RBP5.36□□□□□ -1.55
LIMA1-208ENST00000551691 RNF114Q9Y508 228 aa5.36□□□□□ -1.55
LIMA1-208ENST00000551691 SPATA31A3Q5VYP0 1347 aa5.36□□□□□ -1.55
LIMA1-208ENST00000551691 NPHP3Q7Z494 1330 aa5.36□□□□□ -1.55
LIMA1-208ENST00000551691 PXDNQ92626 1479 aa5.36□□□□□ -1.55
LIMA1-208ENST00000551691 MYOM1P52179 1685 aa5.36□□□□□ -1.55
LIMA1-208ENST00000551691 SHANK3Q9BYB0 1731 aa5.36□□□□□ -1.55
LIMA1-208ENST00000551691 TNKS1BP1Q9C0C2 1729 aaKnown RBP5.36□□□□□ -1.55
LIMA1-208ENST00000551691 EHBP1L1Q8N3D4 1523 aa5.35□□□□□ -1.55
LIMA1-208ENST00000551691 SPATA31A5Q5VU36 1347 aa5.35□□□□□ -1.55
LIMA1-208ENST00000551691 SPATA31A7Q8IWB4 1347 aa5.35□□□□□ -1.55
LIMA1-208ENST00000551691 METTL12A8MUP2 240 aa5.35□□□□□ -1.55
LIMA1-208ENST00000551691 CPNE3O75131 537 aaKnown RBP5.35□□□□□ -1.55
LIMA1-208ENST00000551691 WNT11O96014 354 aa5.35□□□□□ -1.55
LIMA1-208ENST00000551691 ARID5AQ03989 594 aa5.35□□□□□ -1.55
LIMA1-208ENST00000551691 IKBKEQ14164 716 aa5.35□□□□□ -1.55
LIMA1-208ENST00000551691 INTS5Q6P9B9 1019 aaKnown RBP5.35□□□□□ -1.55
LIMA1-208ENST00000551691 VN1R5Q7Z5H4 357 aa5.35□□□□□ -1.55
LIMA1-208ENST00000551691 USP48Q86UV5 1035 aa5.35□□□□□ -1.55
LIMA1-208ENST00000551691 DTX1Q86Y01 620 aa5.35□□□□□ -1.55
LIMA1-208ENST00000551691 ZNF654Q8IZM8 581 aa5.35□□□□□ -1.55
LIMA1-208ENST00000551691 SETDB2Q96T68 719 aa5.35□□□□□ -1.55
LIMA1-208ENST00000551691 DNAJC25Q9H1X3 360 aa5.35□□□□□ -1.55
LIMA1-208ENST00000551691 ACBD3Q9H3P7 528 aa5.35□□□□□ -1.55
LIMA1-208ENST00000551691 OSGEPQ9NPF4 335 aa5.35□□□□□ -1.55
LIMA1-208ENST00000551691 NUP188Q5SRE5 1749 aa5.34□□□□□ -1.55
LIMA1-208ENST00000551691 TMEM131LA2VDJ0 1609 aa5.34□□□□□ -1.55
LIMA1-208ENST00000551691 LAMC1P11047 1609 aa5.34□□□□□ -1.55
LIMA1-208ENST00000551691 KANK1Q14678 1352 aa5.34□□□□□ -1.55
LIMA1-208ENST00000551691 EIF1AYO14602 144 aaKnown RBP5.34□□□□□ -1.55
LIMA1-208ENST00000551691 F13BP05160 661 aa5.34□□□□□ -1.55
LIMA1-208ENST00000551691 POLR3DP05423 398 aaPredicted RBP5.34□□□□□ -1.55
LIMA1-208ENST00000551691 YBX3P16989 372 aaKnown RBP eCLIP5.34□□□□□ -1.55
LIMA1-208ENST00000551691 TXKP42681 527 aa5.34□□□□□ -1.55
LIMA1-208ENST00000551691 RAD51AP2Q09MP3 1159 aa5.34□□□□□ -1.55
LIMA1-208ENST00000551691 ORC1Q13415 861 aa5.34□□□□□ -1.55
LIMA1-208ENST00000551691 NFKBIBQ15653 356 aa5.34□□□□□ -1.55
LIMA1-208ENST00000551691 NUTM2GQ5VZR2 741 aa5.34□□□□□ -1.55
LIMA1-208ENST00000551691 PMFBP1Q8TBY8 1022 aa5.34□□□□□ -1.55
LIMA1-208ENST00000551691 FBLIM1Q8WUP2 373 aa5.34□□□□□ -1.55
LIMA1-208ENST00000551691 DHX38Q92620 1227 aaKnown RBP5.34□□□□□ -1.55
LIMA1-208ENST00000551691 NXPE3Q969Y0 559 aa5.34□□□□□ -1.55
LIMA1-208ENST00000551691 TINF2Q9BSI4 451 aa5.34□□□□□ -1.55
LIMA1-208ENST00000551691 GGT7Q9UJ14 662 aa5.34□□□□□ -1.55
LIMA1-208ENST00000551691 AK5Q9Y6K8 562 aa5.34□□□□□ -1.55
LIMA1-208ENST00000551691 NALCNQ8IZF0 1738 aa5.34□□□□□ -1.56
LIMA1-208ENST00000551691 ATP10DQ9P241 1426 aa5.33□□□□□ -1.56
LIMA1-208ENST00000551691 ROBO2Q9HCK4 1378 aa5.33□□□□□ -1.56
LIMA1-208ENST00000551691 KIF15Q9NS87 1388 aa5.33□□□□□ -1.56
LIMA1-208ENST00000551691 LOC100289279A0A1B0GTE1 492 aa5.33□□□□□ -1.56
LIMA1-208ENST00000551691 ANKRD62A6NC57 917 aa5.33□□□□□ -1.56
LIMA1-208ENST00000551691 STK10O94804 968 aaKnown RBP5.33□□□□□ -1.56
LIMA1-208ENST00000551691 ARL4DP49703 201 aa5.33□□□□□ -1.56
LIMA1-208ENST00000551691 SOGA3Q5TF21 947 aa5.33□□□□□ -1.56
LIMA1-208ENST00000551691 CDPF1Q6NVV7 123 aa5.33□□□□□ -1.56
LIMA1-208ENST00000551691 NOP9Q86U38 636 aaKnown RBP5.33□□□□□ -1.56
LIMA1-208ENST00000551691 METTL16Q86W50 562 aaKnown RBP5.33□□□□□ -1.56
LIMA1-208ENST00000551691 ABI1Q8IZP0 508 aa5.33□□□□□ -1.56
LIMA1-208ENST00000551691 TMEM102Q8N9M5 508 aaPredicted RBP5.33□□□□□ -1.56
LIMA1-208ENST00000551691 SLC43A3Q8NBI5 491 aa5.33□□□□□ -1.56
LIMA1-208ENST00000551691 NLGN2Q8NFZ4 835 aa5.33□□□□□ -1.56
LIMA1-208ENST00000551691 WNT8BQ93098 351 aa5.33□□□□□ -1.56
LIMA1-208ENST00000551691 FMNL2Q96PY5 1086 aa5.33□□□□□ -1.56
LIMA1-208ENST00000551691 HIRIP3Q9BW71 556 aaPredicted RBP5.33□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms