RNA–Protein interactions for RNA: ENST00000550611.1

LIMA1-206, Transcript of LIM domain and actin binding 1, humanhuman

TSL 4

Gene LIMA1, Length 543 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-206ENST00000550611 GLI1P08151 1106 aa5.68□□□□□ -1.5
LIMA1-206ENST00000550611 ITPKAP23677 461 aa5.68□□□□□ -1.5
LIMA1-206ENST00000550611 ID3Q02535 119 aa5.68□□□□□ -1.5
LIMA1-206ENST00000550611 ECM1Q16610 540 aa5.68□□□□□ -1.5
LIMA1-206ENST00000550611 DDX17Q92841 729 aaKnown RBP5.68□□□□□ -1.5
LIMA1-206ENST00000550611 PRDM7Q9NQW5 492 aa5.68□□□□□ -1.5
LIMA1-206ENST00000550611 DISC1Q9NRI5 854 aa5.68□□□□□ -1.5
LIMA1-206ENST00000550611 KDM5DQ9BY66 1539 aa5.68□□□□□ -1.5
LIMA1-206ENST00000550611 SYNMO15061 1565 aa5.67□□□□□ -1.5
LIMA1-206ENST00000550611 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP5.67□□□□□ -1.5
LIMA1-206ENST00000550611 NFIBO00712 420 aa5.67□□□□□ -1.5
LIMA1-206ENST00000550611 POLR3DP05423 398 aaPredicted RBP5.67□□□□□ -1.5
LIMA1-206ENST00000550611 C1QTNF9P0C862 333 aa5.67□□□□□ -1.5
LIMA1-206ENST00000550611 TSPY4P0CV99 314 aa5.67□□□□□ -1.5
LIMA1-206ENST00000550611 TSPY10P0CW01 314 aa5.67□□□□□ -1.5
LIMA1-206ENST00000550611 PTPN12Q05209 780 aaKnown RBP5.67□□□□□ -1.5
LIMA1-206ENST00000550611 ZP2Q05996 745 aa5.67□□□□□ -1.5
LIMA1-206ENST00000550611 IKZF1Q13422 519 aa5.67□□□□□ -1.5
LIMA1-206ENST00000550611 KIAA0319Q5VV43 1072 aa5.67□□□□□ -1.5
LIMA1-206ENST00000550611 FYB2Q5VWT5 728 aa5.67□□□□□ -1.5
LIMA1-206ENST00000550611 PRR23BQ6ZRT6 265 aa5.67□□□□□ -1.5
LIMA1-206ENST00000550611 GJD3Q8N144 294 aa5.67□□□□□ -1.5
LIMA1-206ENST00000550611 GTF3C2Q8WUA4 911 aaPredicted RBP5.67□□□□□ -1.5
LIMA1-206ENST00000550611 CCDC86Q9H6F5 360 aaKnown RBP5.67□□□□□ -1.5
LIMA1-206ENST00000550611 PCOLCE2Q9UKZ9 415 aa5.67□□□□□ -1.5
LIMA1-206ENST00000550611 TIMELESSQ9UNS1 1208 aa5.67□□□□□ -1.5
LIMA1-206ENST00000550611 PCDHGC5Q9Y5F6 944 aa5.67□□□□□ -1.5
LIMA1-206ENST00000550611 UTRNP46939 3433 aa5.67□□□□□ -1.5
LIMA1-206ENST00000550611 TIAM1Q13009 1591 aa5.67□□□□□ -1.5
LIMA1-206ENST00000550611 COL16A1Q07092 1604 aaPredicted RBP5.66□□□□□ -1.5
LIMA1-206ENST00000550611 ZC3H13Q5T200 1668 aaKnown RBP5.66□□□□□ -1.5
LIMA1-206ENST00000550611 ADGBQ8N7X0 1667 aa5.66□□□□□ -1.5
LIMA1-206ENST00000550611 CCDC141Q6ZP82 1450 aa5.66□□□□□ -1.5
LIMA1-206ENST00000550611 LIG1P18858 919 aa5.66□□□□□ -1.5
LIMA1-206ENST00000550611 HNRNPUQ00839 825 aaKnown RBP eCLIP5.66□□□□□ -1.5
LIMA1-206ENST00000550611 KIF4BQ2VIQ3 1234 aa5.66□□□□□ -1.5
LIMA1-206ENST00000550611 WDR89Q96FK6 387 aaPredicted RBP5.66□□□□□ -1.5
LIMA1-206ENST00000550611 KRT82Q9NSB4 513 aa5.66□□□□□ -1.5
LIMA1-206ENST00000550611 NCOA2Q15596 1464 aa5.65□□□□□ -1.5
LIMA1-206ENST00000550611 ARHGAP23Q9P227 1491 aa5.65□□□□□ -1.5
LIMA1-206ENST00000550611 MAP3K1Q13233 1512 aa5.65□□□□□ -1.5
LIMA1-206ENST00000550611 IGF2BP3O00425 579 aaKnown RBP eCLIP5.65□□□□□ -1.5
LIMA1-206ENST00000550611 FZD6O60353 706 aa5.65□□□□□ -1.5
LIMA1-206ENST00000550611 FAM13AO94988 1023 aa5.65□□□□□ -1.5
LIMA1-206ENST00000550611 ITIH2P19823 946 aa5.65□□□□□ -1.5
LIMA1-206ENST00000550611 AAMPQ13685 434 aa5.65□□□□□ -1.5
LIMA1-206ENST00000550611 TTLL4Q14679 1199 aa5.65□□□□□ -1.5
LIMA1-206ENST00000550611 R3HDM1Q15032 1099 aaKnown RBP5.65□□□□□ -1.5
LIMA1-206ENST00000550611 RPS26P11Q5JNZ5 115 aaPredicted RBP5.65□□□□□ -1.5
LIMA1-206ENST00000550611 MPZL3Q6UWV2 235 aa5.65□□□□□ -1.5
LIMA1-206ENST00000550611 FAM214BQ7L5A3 538 aa5.65□□□□□ -1.5
LIMA1-206ENST00000550611 FBXO15Q8NCQ5 510 aaPredicted RBP5.65□□□□□ -1.5
LIMA1-206ENST00000550611 KIRREL1Q96J84 757 aa5.65□□□□□ -1.5
LIMA1-206ENST00000550611 HEXIM2Q96MH2 286 aaKnown RBP5.65□□□□□ -1.5
LIMA1-206ENST00000550611 ERVK-7P63135 1459 aa5.64□□□□□ -1.51
LIMA1-206ENST00000550611 ZNF862O60290 1169 aa5.64□□□□□ -1.51
LIMA1-206ENST00000550611 INHBBP09529 407 aa5.64□□□□□ -1.51
LIMA1-206ENST00000550611 C1QTNF8P60827 252 aa5.64□□□□□ -1.51
LIMA1-206ENST00000550611 TMEM67Q5HYA8 995 aa5.64□□□□□ -1.51
LIMA1-206ENST00000550611 C14orf37Q86TY3 774 aa5.64□□□□□ -1.51
LIMA1-206ENST00000550611 SPACA3Q8IXA5 215 aa5.64□□□□□ -1.51
LIMA1-206ENST00000550611 TOP6BLQ8N6T0 577 aa5.64□□□□□ -1.51
LIMA1-206ENST00000550611 MSH6P52701 1360 aa5.64□□□□□ -1.51
LIMA1-206ENST00000550611 ARHGAP31Q2M1Z3 1444 aa5.64□□□□□ -1.51
LIMA1-206ENST00000550611 CFAP65Q6ZU64 1925 aaKnown RBP5.64□□□□□ -1.51
LIMA1-206ENST00000550611 CAMSAP2Q08AD1 1489 aa5.64□□□□□ -1.51
LIMA1-206ENST00000550611 SCAF11Q99590 1463 aaKnown RBP5.64□□□□□ -1.51
LIMA1-206ENST00000550611 ABCC3O15438 1527 aa5.64□□□□□ -1.51
LIMA1-206ENST00000550611 SLIT1O75093 1534 aa5.64□□□□□ -1.51
LIMA1-206ENST00000550611 EHBP1L1Q8N3D4 1523 aa5.64□□□□□ -1.51
LIMA1-206ENST00000550611 RNGTTO60942 597 aaKnown RBP5.63□□□□□ -1.51
LIMA1-206ENST00000550611 HCLS1P14317 486 aaPredicted RBP5.63□□□□□ -1.51
LIMA1-206ENST00000550611 CTSWP56202 376 aa5.63□□□□□ -1.51
LIMA1-206ENST00000550611 KRTAP5-3Q6L8H2 238 aa5.63□□□□□ -1.51
LIMA1-206ENST00000550611 BRINP3Q76B58 766 aa5.63□□□□□ -1.51
LIMA1-206ENST00000550611 CYFIP1Q7L576 1253 aa5.63□□□□□ -1.51
LIMA1-206ENST00000550611 CD320Q9NPF0 282 aa5.63□□□□□ -1.51
LIMA1-206ENST00000550611 GTF2IRD1Q9UHL9 959 aa5.63□□□□□ -1.51
LIMA1-206ENST00000550611 EID1Q9Y6B2 187 aa5.63□□□□□ -1.51
LIMA1-206ENST00000550611 TMEM2Q9UHN6 1383 aa5.63□□□□□ -1.51
LIMA1-206ENST00000550611 FGD6Q6ZV73 1430 aa5.63□□□□□ -1.51
LIMA1-206ENST00000550611 LRP5O75197 1615 aa5.63□□□□□ -1.51
LIMA1-206ENST00000550611 NPIPB6E9PJ23 425 aa5.62□□□□□ -1.51
LIMA1-206ENST00000550611 NEFMP07197 916 aa5.62□□□□□ -1.51
LIMA1-206ENST00000550611 MED14OSP0DP75 135 aa5.62□□□□□ -1.51
LIMA1-206ENST00000550611 CLCN7P51798 805 aa5.62□□□□□ -1.51
LIMA1-206ENST00000550611 MTMR3Q13615 1198 aa5.62□□□□□ -1.51
LIMA1-206ENST00000550611 IDI1Q13907 227 aa5.62□□□□□ -1.51
LIMA1-206ENST00000550611 TRPC5Q9UL62 973 aaPredicted RBP5.62□□□□□ -1.51
LIMA1-206ENST00000550611 JAG2Q9Y219 1238 aa5.62□□□□□ -1.51
LIMA1-206ENST00000550611 PITPNM2Q9BZ72 1349 aa5.62□□□□□ -1.51
LIMA1-206ENST00000550611 ARHGEF5Q12774 1597 aa5.62□□□□□ -1.51
LIMA1-206ENST00000550611 KCNA10Q16322 511 aa5.61□□□□□ -1.51
LIMA1-206ENST00000550611 NKPD1Q17RQ9 610 aa5.61□□□□□ -1.51
LIMA1-206ENST00000550611 LRRC9Q6ZRR7 1453 aa5.61□□□□□ -1.51
LIMA1-206ENST00000550611 MROH1Q8NDA8 1641 aa5.61□□□□□ -1.51
LIMA1-206ENST00000550611 ISL2Q96A47 359 aa5.61□□□□□ -1.51
LIMA1-206ENST00000550611 PBXIP1Q96AQ6 731 aa5.61□□□□□ -1.51
LIMA1-206ENST00000550611 SHPRHQ149N8 1683 aa5.6□□□□□ -1.51
LIMA1-206ENST00000550611 MAST1Q9Y2H9 1570 aa5.6□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 43.6 ms