RNA–Protein interactions for RNA: ENST00000548539.1

VPS29-205, Transcript of VPS29, retromer complex component, humanhuman

TSL 3

Gene VPS29, Length 598 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-205ENST00000548539 C12orf49Q9H741 205 aa6.65□□□□□ -1.34
VPS29-205ENST00000548539 AKAP2Q9Y2D5 859 aa6.65□□□□□ -1.34
VPS29-205ENST00000548539 FOXD2O60548 495 aaPredicted RBP6.64□□□□□ -1.35
VPS29-205ENST00000548539 BMP7P18075 431 aa6.64□□□□□ -1.35
VPS29-205ENST00000548539 ITGAEP38570 1179 aa6.64□□□□□ -1.35
VPS29-205ENST00000548539 RING1Q06587 406 aa6.64□□□□□ -1.35
VPS29-205ENST00000548539 MPRIPQ6WCQ1 1025 aa6.64□□□□□ -1.35
VPS29-205ENST00000548539 DBX2Q6ZNG2 339 aa6.64□□□□□ -1.35
VPS29-205ENST00000548539 C22orf34Q6ZV56 151 aa6.64□□□□□ -1.35
VPS29-205ENST00000548539 THAP5Q7Z6K1 395 aa6.64□□□□□ -1.35
VPS29-205ENST00000548539 MYLIPQ8WY64 445 aa6.64□□□□□ -1.35
VPS29-205ENST00000548539 UBE2FQ969M7 185 aa6.64□□□□□ -1.35
VPS29-205ENST00000548539 FRMD6Q96NE9 622 aa6.64□□□□□ -1.35
VPS29-205ENST00000548539 BCO2Q9BYV7 579 aa6.64□□□□□ -1.35
VPS29-205ENST00000548539 CACNA2D2Q9NY47 1150 aa6.64□□□□□ -1.35
VPS29-205ENST00000548539 USP17L7P0C7H9 530 aa6.63□□□□□ -1.35
VPS29-205ENST00000548539 SRFP11831 508 aa6.63□□□□□ -1.35
VPS29-205ENST00000548539 ZNF507Q8TCN5 953 aa6.63□□□□□ -1.35
VPS29-205ENST00000548539 CRELD1Q96HD1 420 aa6.63□□□□□ -1.35
VPS29-205ENST00000548539 ST14Q9Y5Y6 855 aa6.63□□□□□ -1.35
VPS29-205ENST00000548539 CAPN6Q9Y6Q1 641 aa6.63□□□□□ -1.35
VPS29-205ENST00000548539 CNTNAP4Q9C0A0 1308 aa6.62□□□□□ -1.35
VPS29-205ENST00000548539 ERCC5P28715 1186 aaPredicted RBP6.62□□□□□ -1.35
VPS29-205ENST00000548539 FANCCQ00597 558 aa6.62□□□□□ -1.35
VPS29-205ENST00000548539 MEI1Q5TIA1 1274 aa6.62□□□□□ -1.35
VPS29-205ENST00000548539 GRIN3AQ8TCU5 1115 aa6.62□□□□□ -1.35
VPS29-205ENST00000548539 ZSWIM5Q9P217 1185 aa6.62□□□□□ -1.35
VPS29-205ENST00000548539 SAMM50Q9Y512 469 aa6.62□□□□□ -1.35
VPS29-205ENST00000548539 DNAJC25-GNG10A0A024R161 153 aa6.61□□□□□ -1.35
VPS29-205ENST00000548539 IGSF3O75054 1194 aa6.61□□□□□ -1.35
VPS29-205ENST00000548539 TRIM37O94972 964 aa6.61□□□□□ -1.35
VPS29-205ENST00000548539 ZNF76P36508 570 aa6.61□□□□□ -1.35
VPS29-205ENST00000548539 HK2P52789 917 aa6.61□□□□□ -1.35
VPS29-205ENST00000548539 ERVFC1P60507 584 aa6.61□□□□□ -1.35
VPS29-205ENST00000548539 RNF34Q969K3 372 aa6.61□□□□□ -1.35
VPS29-205ENST00000548539 MIPEPQ99797 713 aa6.61□□□□□ -1.35
VPS29-205ENST00000548539 FAM8A1Q9UBU6 413 aa6.61□□□□□ -1.35
VPS29-205ENST00000548539 PCDHA4Q9UN74 947 aa6.61□□□□□ -1.35
VPS29-205ENST00000548539 GIPC1O14908 333 aa6.6□□□□□ -1.35
VPS29-205ENST00000548539 CBX7O95931 251 aa6.6□□□□□ -1.35
VPS29-205ENST00000548539 RALGPS1Q5JS13 557 aa6.6□□□□□ -1.35
VPS29-205ENST00000548539 NT5DC4Q86YG4 428 aa6.6□□□□□ -1.35
VPS29-205ENST00000548539 ELMO3Q96BJ8 720 aa6.6□□□□□ -1.35
VPS29-205ENST00000548539 TMEM59LQ9UK28 342 aa6.6□□□□□ -1.35
VPS29-205ENST00000548539 A0A0G2JLL6 359 aaPredicted RBP6.59□□□□□ -1.35
VPS29-205ENST00000548539 HPXP02790 462 aa6.59□□□□□ -1.35
VPS29-205ENST00000548539 SYN1P17600 705 aa6.59□□□□□ -1.35
VPS29-205ENST00000548539 ZNF746Q6NUN9 644 aaPredicted RBP6.59□□□□□ -1.35
VPS29-205ENST00000548539 METTL16Q86W50 562 aaKnown RBP6.59□□□□□ -1.35
VPS29-205ENST00000548539 MFSD2AQ8NA29 543 aa6.59□□□□□ -1.35
VPS29-205ENST00000548539 BAHD1Q8TBE0 780 aaPredicted RBP6.59□□□□□ -1.35
VPS29-205ENST00000548539 NECAB3Q96P71 396 aaPredicted RBP6.59□□□□□ -1.35
VPS29-205ENST00000548539 BMP6P22004 513 aa6.58□□□□□ -1.36
VPS29-205ENST00000548539 RAD51AP2Q09MP3 1159 aa6.58□□□□□ -1.36
VPS29-205ENST00000548539 SRCIN1Q9C0H9 1055 aa6.58□□□□□ -1.36
VPS29-205ENST00000548539 METTL5Q9NRN9 209 aaKnown RBP6.58□□□□□ -1.36
VPS29-205ENST00000548539 USP35Q9P2H5 1018 aa6.58□□□□□ -1.36
VPS29-205ENST00000548539 TTF2Q9UNY4 1162 aaKnown RBP6.58□□□□□ -1.36
VPS29-205ENST00000548539 GSTT1P30711 240 aa6.57□□□□□ -1.36
VPS29-205ENST00000548539 DLG4P78352 724 aa6.57□□□□□ -1.36
VPS29-205ENST00000548539 NFIXQ14938 502 aa6.57□□□□□ -1.36
VPS29-205ENST00000548539 LRRC14Q15048 493 aa6.57□□□□□ -1.36
VPS29-205ENST00000548539 TAF1CQ15572 869 aaPredicted RBP6.57□□□□□ -1.36
VPS29-205ENST00000548539 ZNF394Q53GI3 561 aa6.57□□□□□ -1.36
VPS29-205ENST00000548539 TCERG1LQ5VWI1 586 aa6.57□□□□□ -1.36
VPS29-205ENST00000548539 LLGL2Q6P1M3 1020 aa6.57□□□□□ -1.36
VPS29-205ENST00000548539 TMPRSS7Q7RTY8 843 aa6.57□□□□□ -1.36
VPS29-205ENST00000548539 RIN3Q8TB24 985 aa6.57□□□□□ -1.36
VPS29-205ENST00000548539 RNF32Q9H0A6 362 aa6.57□□□□□ -1.36
VPS29-205ENST00000548539 PCDHGB7Q9Y5F8 929 aa6.57□□□□□ -1.36
VPS29-205ENST00000548539 USP31Q70CQ4 1352 aa6.57□□□□□ -1.36
VPS29-205ENST00000548539 PRAMEF27A3QJZ7 478 aa6.56□□□□□ -1.36
VPS29-205ENST00000548539 FBXO24O75426 580 aa6.56□□□□□ -1.36
VPS29-205ENST00000548539 ESR1P03372 595 aa6.56□□□□□ -1.36
VPS29-205ENST00000548539 CYP7A1P22680 504 aa6.56□□□□□ -1.36
VPS29-205ENST00000548539 TRHRP34981 398 aaPredicted RBP6.56□□□□□ -1.36
VPS29-205ENST00000548539 KIR3DL1P43629 444 aa6.56□□□□□ -1.36
VPS29-205ENST00000548539 ZC3H6P61129 1189 aaKnown RBP6.56□□□□□ -1.36
VPS29-205ENST00000548539 SLBPQ14493 270 aaKnown RBP eCLIP6.56□□□□□ -1.36
VPS29-205ENST00000548539 NAALADL2Q58DX5 795 aa6.56□□□□□ -1.36
VPS29-205ENST00000548539 TMEM132EQ6IEE7 984 aa6.56□□□□□ -1.36
VPS29-205ENST00000548539 LETMD1Q6P1Q0 360 aa6.56□□□□□ -1.36
VPS29-205ENST00000548539 TPTE2Q6XPS3 522 aa6.56□□□□□ -1.36
VPS29-205ENST00000548539 COX4I2Q96KJ9 171 aa6.56□□□□□ -1.36
VPS29-205ENST00000548539 KCNC2Q96PR1 638 aa6.56□□□□□ -1.36
VPS29-205ENST00000548539 CEP44Q9C0F1 390 aa6.56□□□□□ -1.36
VPS29-205ENST00000548539 MCOLN1Q9GZU1 580 aa6.56□□□□□ -1.36
VPS29-205ENST00000548539 ADAMTS10Q9H324 1103 aa6.56□□□□□ -1.36
VPS29-205ENST00000548539 FBRSQ9HAH7 460 aa6.56□□□□□ -1.36
VPS29-205ENST00000548539 GGT7Q9UJ14 662 aa6.56□□□□□ -1.36
VPS29-205ENST00000548539 CNOT6Q9ULM6 557 aaKnown RBP6.56□□□□□ -1.36
VPS29-205ENST00000548539 F6X3S4 739 aa6.55□□□□□ -1.36
VPS29-205ENST00000548539 TNK2Q07912 1038 aa6.55□□□□□ -1.36
VPS29-205ENST00000548539 ZNF385BQ569K4 471 aa6.55□□□□□ -1.36
VPS29-205ENST00000548539 SCARA3Q6AZY7 606 aa6.55□□□□□ -1.36
VPS29-205ENST00000548539 HS2ST1Q7LGA3 356 aa6.55□□□□□ -1.36
VPS29-205ENST00000548539 IRF2BP1Q8IU81 584 aa6.55□□□□□ -1.36
VPS29-205ENST00000548539 MARCH10Q8NA82 808 aaPredicted RBP6.55□□□□□ -1.36
VPS29-205ENST00000548539 C3orf58Q8NDZ4 430 aa6.55□□□□□ -1.36
VPS29-205ENST00000548539 SLC6A17Q9H1V8 727 aa6.55□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms