RNA–Protein interactions for RNA: ENST00000546974.1

COL2A1-209, Transcript of collagen type II alpha 1 chain, humanhuman

TSL 1 (best)

Gene COL2A1, Length 703 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL2A1-209ENST00000546974 USP17L17D6RBQ6 530 aa17.37■□□□□ 0.37
COL2A1-209ENST00000546974 USP17L19D6RCP7 530 aa17.37■□□□□ 0.37
COL2A1-209ENST00000546974 USP17L20D6RJB6 530 aa17.37■□□□□ 0.37
COL2A1-209ENST00000546974 ERVK-9P63128 1117 aa17.37■□□□□ 0.37
COL2A1-209ENST00000546974 ERVK-24P63145 666 aa17.37■□□□□ 0.37
COL2A1-209ENST00000546974 USP17L24Q0WX57 530 aa17.37■□□□□ 0.37
COL2A1-209ENST00000546974 ARMT1Q9H993 441 aa17.37■□□□□ 0.37
COL2A1-209ENST00000546974 PAK6Q9NQU5 681 aaPredicted RBP17.37■□□□□ 0.37
COL2A1-209ENST00000546974 ATP8A2Q9NTI2 1148 aa17.37■□□□□ 0.37
COL2A1-209ENST00000546974 SMARCA5O60264 1052 aaPredicted RBP17.36■□□□□ 0.37
COL2A1-209ENST00000546974 HMGCRP04035 888 aa17.36■□□□□ 0.37
COL2A1-209ENST00000546974 MAPK4P31152 587 aa17.36■□□□□ 0.37
COL2A1-209ENST00000546974 GUCY1A2P33402 732 aa17.36■□□□□ 0.37
COL2A1-209ENST00000546974 UBE3CQ15386 1083 aa17.36■□□□□ 0.37
COL2A1-209ENST00000546974 ZYXQ15942 572 aaKnown RBP17.36■□□□□ 0.37
COL2A1-209ENST00000546974 Q3C1V9 767 aa17.36■□□□□ 0.37
COL2A1-209ENST00000546974 CATSPERGQ6ZRH7 1159 aa17.36■□□□□ 0.37
COL2A1-209ENST00000546974 ACER1Q8TDN7 264 aa17.36■□□□□ 0.37
COL2A1-209ENST00000546974 SWAP70Q9UH65 585 aa17.36■□□□□ 0.37
COL2A1-209ENST00000546974 PEX10O60683 326 aa17.35■□□□□ 0.37
COL2A1-209ENST00000546974 MBD4O95243 580 aa17.35■□□□□ 0.37
COL2A1-209ENST00000546974 EVX2Q03828 476 aa17.35■□□□□ 0.37
COL2A1-209ENST00000546974 SEPT2Q15019 361 aa17.35■□□□□ 0.37
COL2A1-209ENST00000546974 SLFNL1Q499Z3 407 aa17.35■□□□□ 0.37
COL2A1-209ENST00000546974 ZSCAN25Q6NSZ9 544 aa17.35■□□□□ 0.37
COL2A1-209ENST00000546974 POTEEQ6S8J3 1075 aa17.35■□□□□ 0.37
COL2A1-209ENST00000546974 SOCS4Q8WXH5 440 aa17.35■□□□□ 0.37
COL2A1-209ENST00000546974 DEFB118Q96PH6 123 aa17.35■□□□□ 0.37
COL2A1-209ENST00000546974 NUDT12Q9BQG2 462 aa17.35■□□□□ 0.37
COL2A1-209ENST00000546974 HTATIP2Q9BUP3 242 aa17.35■□□□□ 0.37
COL2A1-209ENST00000546974 DCTPP1Q9H773 170 aa17.35■□□□□ 0.37
COL2A1-209ENST00000546974 RABGAP1Q9Y3P9 1069 aa17.35■□□□□ 0.37
COL2A1-209ENST00000546974 PRKAB2O43741 272 aa17.34■□□□□ 0.37
COL2A1-209ENST00000546974 FARP2O94887 1054 aaPredicted RBP17.34■□□□□ 0.37
COL2A1-209ENST00000546974 TFRCP02786 760 aaKnown RBP17.34■□□□□ 0.37
COL2A1-209ENST00000546974 XRCC5P13010 732 aaKnown RBP17.34■□□□□ 0.37
COL2A1-209ENST00000546974 VCAM1P19320 739 aa17.34■□□□□ 0.37
COL2A1-209ENST00000546974 HABP4Q5JVS0 413 aaKnown RBP17.34■□□□□ 0.37
COL2A1-209ENST00000546974 LBX2Q6XYB7 198 aa17.34■□□□□ 0.37
COL2A1-209ENST00000546974 CCAR1Q8IX12 1150 aaKnown RBP17.34■□□□□ 0.37
COL2A1-209ENST00000546974 DPF3Q92784 378 aa17.34■□□□□ 0.37
COL2A1-209ENST00000546974 PAGR1Q9BTK6 254 aa17.34■□□□□ 0.37
COL2A1-209ENST00000546974 CRISPLD2Q9H0B8 497 aa17.34■□□□□ 0.37
COL2A1-209ENST00000546974 ECHDC1Q9NTX5 307 aa17.34■□□□□ 0.37
COL2A1-209ENST00000546974 RPTORQ8N122 1335 aa17.33■□□□□ 0.36
COL2A1-209ENST00000546974 MPHOSPH10O00566 681 aaKnown RBP17.33■□□□□ 0.36
COL2A1-209ENST00000546974 CYP2D6P10635 497 aa17.33■□□□□ 0.36
COL2A1-209ENST00000546974 CYP2B6P20813 491 aa17.33■□□□□ 0.36
COL2A1-209ENST00000546974 TMEM179Q6ZVK1 233 aa17.33■□□□□ 0.36
COL2A1-209ENST00000546974 XRN2Q9H0D6 950 aaKnown RBP eCLIP17.33■□□□□ 0.36
COL2A1-209ENST00000546974 PORCNQ9H237 461 aa17.33■□□□□ 0.36
COL2A1-209ENST00000546974 H0YGN5 161 aa17.32■□□□□ 0.36
COL2A1-209ENST00000546974 CNMDO75829 334 aa17.32■□□□□ 0.36
COL2A1-209ENST00000546974 C12orf60Q5U649 245 aa17.32■□□□□ 0.36
COL2A1-209ENST00000546974 GPR142Q7Z601 462 aa17.32■□□□□ 0.36
COL2A1-209ENST00000546974 PLEKHH3Q7Z736 793 aa17.32■□□□□ 0.36
COL2A1-209ENST00000546974 AMOTL1Q8IY63 956 aa17.32■□□□□ 0.36
COL2A1-209ENST00000546974 TRMT44Q8IYL2 757 aaKnown RBP17.32■□□□□ 0.36
COL2A1-209ENST00000546974 SLC44A5Q8NCS7 719 aa17.32■□□□□ 0.36
COL2A1-209ENST00000546974 TRIB2Q92519 343 aa17.32■□□□□ 0.36
COL2A1-209ENST00000546974 USP6NLQ92738 828 aa17.32■□□□□ 0.36
COL2A1-209ENST00000546974 DYNLL2Q96FJ2 89 aa17.32■□□□□ 0.36
COL2A1-209ENST00000546974 DDRGK1Q96HY6 314 aa17.32■□□□□ 0.36
COL2A1-209ENST00000546974 RPAP3Q9H6T3 665 aaPredicted RBP17.32■□□□□ 0.36
COL2A1-209ENST00000546974 HMX1Q9NP08 348 aaPredicted RBP17.32■□□□□ 0.36
COL2A1-209ENST00000546974 A0A1W2PRG0 241 aa17.31■□□□□ 0.36
COL2A1-209ENST00000546974 CHGBP05060 677 aa17.31■□□□□ 0.36
COL2A1-209ENST00000546974 CCNA1P78396 465 aa17.31■□□□□ 0.36
COL2A1-209ENST00000546974 TRIM32Q13049 653 aa17.31■□□□□ 0.36
COL2A1-209ENST00000546974 MORN1Q5T089 497 aa17.31■□□□□ 0.36
COL2A1-209ENST00000546974 GPATCH3Q96I76 525 aa17.31■□□□□ 0.36
COL2A1-209ENST00000546974 CCDC17Q96LX7 622 aa17.31■□□□□ 0.36
COL2A1-209ENST00000546974 PUS7LQ9H0K6 701 aaKnown RBP17.31■□□□□ 0.36
COL2A1-209ENST00000546974 SLC4A4Q9Y6R1 1079 aa17.31■□□□□ 0.36
COL2A1-209ENST00000546974 USP17L12C9JPN9 530 aa17.3■□□□□ 0.36
COL2A1-209ENST00000546974 USP17L21D6R901 530 aa17.3■□□□□ 0.36
COL2A1-209ENST00000546974 GLRX3O76003 335 aaKnown RBP17.3■□□□□ 0.36
COL2A1-209ENST00000546974 RGS2P41220 211 aa17.3■□□□□ 0.36
COL2A1-209ENST00000546974 MAP3K21Q5TCX8 1036 aa17.3■□□□□ 0.36
COL2A1-209ENST00000546974 ANKLE1Q8NAG6 615 aa17.3■□□□□ 0.36
COL2A1-209ENST00000546974 CWC22Q9HCG8 908 aaKnown RBP17.3■□□□□ 0.36
COL2A1-209ENST00000546974 RANBP2P49792 3224 aaKnown RBP17.29■□□□□ 0.36
COL2A1-209ENST00000546974 CYP2D7A0A087X1C5 515 aa17.29■□□□□ 0.36
COL2A1-209ENST00000546974 SPDYE16A6NNV3 312 aaPredicted RBP17.29■□□□□ 0.36
COL2A1-209ENST00000546974 AKR1B1P15121 316 aa17.29■□□□□ 0.36
COL2A1-209ENST00000546974 CDK8P49336 464 aa17.29■□□□□ 0.36
COL2A1-209ENST00000546974 C16orf86Q6ZW13 317 aa17.29■□□□□ 0.36
COL2A1-209ENST00000546974 KBTBD3Q8NAB2 608 aa17.29■□□□□ 0.36
COL2A1-209ENST00000546974 ARHGEF10LQ9HCE6 1279 aa17.29■□□□□ 0.36
COL2A1-209ENST00000546974 HOXC10Q9NYD6 342 aa17.29■□□□□ 0.36
COL2A1-209ENST00000546974 BTBD7Q9P203 1132 aa17.29■□□□□ 0.36
COL2A1-209ENST00000546974 COLQQ9Y215 455 aaPredicted RBP17.29■□□□□ 0.36
COL2A1-209ENST00000546974 RLFQ13129 1914 aa17.29■□□□□ 0.36
COL2A1-209ENST00000546974 PRKAR2AP13861 404 aaKnown RBP17.28■□□□□ 0.36
COL2A1-209ENST00000546974 ZKSCAN1P17029 563 aaPredicted RBP17.28■□□□□ 0.36
COL2A1-209ENST00000546974 MAP2K5Q13163 448 aa17.28■□□□□ 0.36
COL2A1-209ENST00000546974 COG2Q14746 738 aa17.28■□□□□ 0.36
COL2A1-209ENST00000546974 CTR9Q6PD62 1173 aa17.28■□□□□ 0.36
COL2A1-209ENST00000546974 SIAH1Q8IUQ4 282 aa17.28■□□□□ 0.36
COL2A1-209ENST00000546974 LPAR1Q92633 364 aa17.28■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms