RNA–Protein interactions for RNA: ENST00000546820.5

PTCH1-213, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 864 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-213ENST00000546820 BACE1P56817 501 aa16.27■□□□□ 0.2
PTCH1-213ENST00000546820 ICA1Q05084 483 aa16.27■□□□□ 0.2
PTCH1-213ENST00000546820 CCL15Q16663 113 aa16.27■□□□□ 0.2
PTCH1-213ENST00000546820 SHROOM1Q2M3G4 852 aaPredicted RBP16.27■□□□□ 0.2
PTCH1-213ENST00000546820 FAM47AQ5JRC9 791 aa16.27■□□□□ 0.2
PTCH1-213ENST00000546820 CCDC84Q86UT8 332 aaPredicted RBP16.27■□□□□ 0.2
PTCH1-213ENST00000546820 MS4A4AQ96JQ5 239 aa16.27■□□□□ 0.2
PTCH1-213ENST00000546820 FEZ1Q99689 392 aa16.27■□□□□ 0.2
PTCH1-213ENST00000546820 TMOD4Q9NZQ9 345 aa16.27■□□□□ 0.2
PTCH1-213ENST00000546820 MYH8P13535 1937 aa16.27■□□□□ 0.19
PTCH1-213ENST00000546820 TESPA1A2RU30 521 aaPredicted RBP16.26■□□□□ 0.19
PTCH1-213ENST00000546820 SLC27A2O14975 620 aa16.26■□□□□ 0.19
PTCH1-213ENST00000546820 ALDH1A1P00352 501 aa16.26■□□□□ 0.19
PTCH1-213ENST00000546820 MCCP23508 829 aa16.26■□□□□ 0.19
PTCH1-213ENST00000546820 GUCY1A2P33402 732 aa16.26■□□□□ 0.19
PTCH1-213ENST00000546820 ATP2B2Q01814 1243 aa16.26■□□□□ 0.19
PTCH1-213ENST00000546820 CCDC178Q5BJE1 867 aa16.26■□□□□ 0.19
PTCH1-213ENST00000546820 CREB3L3Q68CJ9 461 aa16.26■□□□□ 0.19
PTCH1-213ENST00000546820 RALYLQ86SE5 291 aaKnown RBP16.26■□□□□ 0.19
PTCH1-213ENST00000546820 TBC1D10CQ8IV04 446 aa16.26■□□□□ 0.19
PTCH1-213ENST00000546820 NBPF3Q9H094 633 aa16.26■□□□□ 0.19
PTCH1-213ENST00000546820 FRMD4AQ9P2Q2 1039 aaPredicted RBP16.26■□□□□ 0.19
PTCH1-213ENST00000546820 ATAD5Q96QE3 1844 aa16.25■□□□□ 0.19
PTCH1-213ENST00000546820 A0A0G2JLL6 359 aaPredicted RBP16.25■□□□□ 0.19
PTCH1-213ENST00000546820 E7EWF7 191 aa16.25■□□□□ 0.19
PTCH1-213ENST00000546820 TTLL1O95922 423 aa16.25■□□□□ 0.19
PTCH1-213ENST00000546820 SH3D19Q5HYK7 790 aa16.25■□□□□ 0.19
PTCH1-213ENST00000546820 USP17L2Q6R6M4 530 aa16.25■□□□□ 0.19
PTCH1-213ENST00000546820 GADL1Q6ZQY3 521 aa16.25■□□□□ 0.19
PTCH1-213ENST00000546820 PRRT2Q7Z6L0 340 aaPredicted RBP16.25■□□□□ 0.19
PTCH1-213ENST00000546820 IQCA1Q86XH1 822 aa16.25■□□□□ 0.19
PTCH1-213ENST00000546820 NCOA7Q8NI08 942 aa16.25■□□□□ 0.19
PTCH1-213ENST00000546820 ZIC5Q96T25 663 aa16.25■□□□□ 0.19
PTCH1-213ENST00000546820 KIAA1683Q9H0B3 1180 aa16.25■□□□□ 0.19
PTCH1-213ENST00000546820 TCP11L1Q9NUJ3 509 aa16.25■□□□□ 0.19
PTCH1-213ENST00000546820 MTMR4Q9NYA4 1195 aa16.25■□□□□ 0.19
PTCH1-213ENST00000546820 NYAP2Q9P242 653 aa16.25■□□□□ 0.19
PTCH1-213ENST00000546820 KDM4AO75164 1064 aa16.24■□□□□ 0.19
PTCH1-213ENST00000546820 EEF2P13639 858 aaKnown RBP16.24■□□□□ 0.19
PTCH1-213ENST00000546820 PABPC4Q13310 644 aaKnown RBP eCLIP16.24■□□□□ 0.19
PTCH1-213ENST00000546820 MTMR2Q13614 643 aa16.24■□□□□ 0.19
PTCH1-213ENST00000546820 KRT32Q14532 448 aa16.24■□□□□ 0.19
PTCH1-213ENST00000546820 IFNL1Q8IU54 200 aa16.24■□□□□ 0.19
PTCH1-213ENST00000546820 JMYQ8N9B5 988 aa16.24■□□□□ 0.19
PTCH1-213ENST00000546820 PROCA1Q8NCQ7 364 aaPredicted RBP16.24■□□□□ 0.19
PTCH1-213ENST00000546820 TTC14Q96N46 770 aa16.24■□□□□ 0.19
PTCH1-213ENST00000546820 GNL3Q9BVP2 549 aaKnown RBP eCLIP16.24■□□□□ 0.19
PTCH1-213ENST00000546820 CLIP2Q9UDT6 1046 aa16.24■□□□□ 0.19
PTCH1-213ENST00000546820 TMX2Q9Y320 296 aa16.24■□□□□ 0.19
PTCH1-213ENST00000546820 TACC3Q9Y6A5 838 aa16.24■□□□□ 0.19
PTCH1-213ENST00000546820 IGKV6D-41A0A0C4DH26 115 aa16.23■□□□□ 0.19
PTCH1-213ENST00000546820 B4E1Z4 1266 aa16.23■□□□□ 0.19
PTCH1-213ENST00000546820 HMGCS2P54868 508 aa16.23■□□□□ 0.19
PTCH1-213ENST00000546820 TSGA10IPQ3SY00 556 aa16.23■□□□□ 0.19
PTCH1-213ENST00000546820 ANKRD23Q86SG2 305 aa16.23■□□□□ 0.19
PTCH1-213ENST00000546820 ACER1Q8TDN7 264 aa16.23■□□□□ 0.19
PTCH1-213ENST00000546820 BRI3BPQ8WY22 251 aa16.23■□□□□ 0.19
PTCH1-213ENST00000546820 MKL1Q969V6 931 aa16.23■□□□□ 0.19
PTCH1-213ENST00000546820 CEP95Q96GE4 821 aa16.23■□□□□ 0.19
PTCH1-213ENST00000546820 USP26Q9BXU7 913 aa16.23■□□□□ 0.19
PTCH1-213ENST00000546820 GOPCQ9HD26 462 aa16.23■□□□□ 0.19
PTCH1-213ENST00000546820 ZCCHC17Q9NP64 241 aaKnown RBP16.23■□□□□ 0.19
PTCH1-213ENST00000546820 ZSWIM5Q9P217 1185 aa16.23■□□□□ 0.19
PTCH1-213ENST00000546820 SYNPO2Q9UMS6 1093 aa16.23■□□□□ 0.19
PTCH1-213ENST00000546820 PLIN4Q96Q06 1357 aa16.23■□□□□ 0.19
PTCH1-213ENST00000546820 NEDD4P46934 1319 aa16.22■□□□□ 0.19
PTCH1-213ENST00000546820 CA12O43570 354 aa16.22■□□□□ 0.19
PTCH1-213ENST00000546820 HSPA4P34932 840 aa16.22■□□□□ 0.19
PTCH1-213ENST00000546820 SIAH1Q8IUQ4 282 aa16.22■□□□□ 0.19
PTCH1-213ENST00000546820 UBAC1Q9BSL1 405 aa16.22■□□□□ 0.19
PTCH1-213ENST00000546820 STX8Q9UNK0 236 aa16.22■□□□□ 0.19
PTCH1-213ENST00000546820 SLC45A1Q9Y2W3 748 aa16.22■□□□□ 0.19
PTCH1-213ENST00000546820 A0A1W2PRG0 241 aa16.21■□□□□ 0.19
PTCH1-213ENST00000546820 ERICH2A1L162 156 aa16.21■□□□□ 0.19
PTCH1-213ENST00000546820 BTBD19C9JJ37 291 aa16.21■□□□□ 0.19
PTCH1-213ENST00000546820 SART3Q15020 963 aaKnown RBP16.21■□□□□ 0.19
PTCH1-213ENST00000546820 ZYXQ15942 572 aaKnown RBP16.21■□□□□ 0.19
PTCH1-213ENST00000546820 DGKHQ86XP1 1220 aa16.21■□□□□ 0.19
PTCH1-213ENST00000546820 LPAR1Q92633 364 aa16.21■□□□□ 0.19
PTCH1-213ENST00000546820 C12orf42Q96LP6 360 aa16.21■□□□□ 0.19
PTCH1-213ENST00000546820 ZSCAN10Q96SZ4 725 aaPredicted RBP16.21■□□□□ 0.19
PTCH1-213ENST00000546820 PTPN18Q99952 460 aa16.21■□□□□ 0.19
PTCH1-213ENST00000546820 IL17RBQ9NRM6 502 aa16.21■□□□□ 0.19
PTCH1-213ENST00000546820 EMILIN3Q9NT22 766 aa16.21■□□□□ 0.19
PTCH1-213ENST00000546820 WBP1LQ9NX94 342 aa16.21■□□□□ 0.19
PTCH1-213ENST00000546820 AGTPBP1Q9UPW5 1226 aa16.21■□□□□ 0.19
PTCH1-213ENST00000546820 LAMA4Q16363 1823 aa16.21■□□□□ 0.19
PTCH1-213ENST00000546820 PHIPQ8WWQ0 1821 aa16.2■□□□□ 0.18
PTCH1-213ENST00000546820 PDHXO00330 501 aa16.2■□□□□ 0.18
PTCH1-213ENST00000546820 RAD21O60216 631 aa16.2■□□□□ 0.18
PTCH1-213ENST00000546820 HMGB1P09429 215 aaKnown RBP16.2■□□□□ 0.18
PTCH1-213ENST00000546820 OSBPP22059 807 aa16.2■□□□□ 0.18
PTCH1-213ENST00000546820 MCM5P33992 734 aa16.2■□□□□ 0.18
PTCH1-213ENST00000546820 KCNB2Q92953 911 aa16.2■□□□□ 0.18
PTCH1-213ENST00000546820 NEK1Q96PY6 1258 aa16.2■□□□□ 0.18
PTCH1-213ENST00000546820 VCPKMTQ9H867 229 aa16.2■□□□□ 0.18
PTCH1-213ENST00000546820 SAGE1Q9NXZ1 904 aa16.2■□□□□ 0.18
PTCH1-213ENST00000546820 PNMA3Q9UL41 463 aa16.2■□□□□ 0.18
PTCH1-213ENST00000546820 F5H6K3 240 aa16.19■□□□□ 0.18
PTCH1-213ENST00000546820 IGF2BP3O00425 579 aaKnown RBP eCLIP16.19■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms