RNA–Protein interactions for RNA: ENST00000544301.6

VIM-209, Transcript of vimentin, humanhuman

APPRIS P1 TSL 1 (best)

Gene VIM, Length 2,135 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-209ENST00000544301 DZIP1Q86YF9 867 aaKnown RBP20.65■□□□□ 0.9
VIM-209ENST00000544301 SRBD1Q8N5C6 995 aaKnown RBP20.65■□□□□ 0.9
VIM-209ENST00000544301 TAF1LQ8IZX4 1826 aa20.65■□□□□ 0.9
VIM-209ENST00000544301 CNTNAP5Q8WYK1 1306 aa20.65■□□□□ 0.9
VIM-209ENST00000544301 USP27XA6NNY8 438 aa20.65■□□□□ 0.9
VIM-209ENST00000544301 MAN1B1Q9UKM7 699 aa20.65■□□□□ 0.9
VIM-209ENST00000544301 UBAP1LF5GYI3 381 aa20.64■□□□□ 0.89
VIM-209ENST00000544301 PRR29P0C7W0 189 aa20.64■□□□□ 0.89
VIM-209ENST00000544301 RFC4P35249 363 aa20.64■□□□□ 0.89
VIM-209ENST00000544301 PDE4BQ07343 736 aa20.64■□□□□ 0.89
VIM-209ENST00000544301 NT5DC1Q5TFE4 455 aa20.64■□□□□ 0.89
VIM-209ENST00000544301 ARMCX5Q6P1M9 558 aa20.64■□□□□ 0.89
VIM-209ENST00000544301 USP49Q70CQ1 688 aa20.64■□□□□ 0.89
VIM-209ENST00000544301 SLC51AQ86UW1 340 aa20.64■□□□□ 0.89
VIM-209ENST00000544301 CCDC150Q8NCX0 1101 aa20.64■□□□□ 0.89
VIM-209ENST00000544301 CTCFLQ8NI51 663 aaPredicted RBP20.64■□□□□ 0.89
VIM-209ENST00000544301 ACTN4O43707 911 aaKnown RBP20.63■□□□□ 0.89
VIM-209ENST00000544301 SARSP49591 514 aaKnown RBP20.63■□□□□ 0.89
VIM-209ENST00000544301 NPY5RQ15761 445 aa20.63■□□□□ 0.89
VIM-209ENST00000544301 TRAPPC3LQ5T215 181 aa20.63■□□□□ 0.89
VIM-209ENST00000544301 MTERF4Q7Z6M4 381 aaKnown RBP20.63■□□□□ 0.89
VIM-209ENST00000544301 TNFRSF25Q93038 417 aa20.63■□□□□ 0.89
VIM-209ENST00000544301 KCND1Q9NSA2 647 aa20.63■□□□□ 0.89
VIM-209ENST00000544301 ANKIB1Q9P2G1 1089 aa20.63■□□□□ 0.89
VIM-209ENST00000544301 LY75O60449 1722 aa20.63■□□□□ 0.89
VIM-209ENST00000544301 GRAPQ13588 217 aa20.63■□□□□ 0.89
VIM-209ENST00000544301 ZNF710Q8N1W2 664 aa20.63■□□□□ 0.89
VIM-209ENST00000544301 GRAPLQ8TC17 118 aaPredicted RBP20.63■□□□□ 0.89
VIM-209ENST00000544301 NOL10Q9BSC4 688 aaKnown RBP20.63■□□□□ 0.89
VIM-209ENST00000544301 BRMS1Q9HCU9 246 aa20.63■□□□□ 0.89
VIM-209ENST00000544301 MCM9Q9NXL9 1143 aa20.63■□□□□ 0.89
VIM-209ENST00000544301 LEMD3Q9Y2U8 911 aa20.63■□□□□ 0.89
VIM-209ENST00000544301 MYO1BO43795 1136 aa20.62■□□□□ 0.89
VIM-209ENST00000544301 USP17L8P0C7I0 530 aa20.62■□□□□ 0.89
VIM-209ENST00000544301 PDILTQ8N807 584 aa20.62■□□□□ 0.89
VIM-209ENST00000544301 TSPY2A6NKD2 308 aa20.62■□□□□ 0.89
VIM-209ENST00000544301 UBASH3AP57075 661 aa20.62■□□□□ 0.89
VIM-209ENST00000544301 NFIXQ14938 502 aa20.62■□□□□ 0.89
VIM-209ENST00000544301 KANK3Q6NY19 840 aa20.62■□□□□ 0.89
VIM-209ENST00000544301 NYAP1Q6ZVC0 841 aa20.62■□□□□ 0.89
VIM-209ENST00000544301 GRAMD1CQ8IYS0 662 aa20.62■□□□□ 0.89
VIM-209ENST00000544301 CCAR2Q8N163 923 aaKnown RBP20.62■□□□□ 0.89
VIM-209ENST00000544301 WDR66Q8TBY9 1149 aa20.62■□□□□ 0.89
VIM-209ENST00000544301 DPF2Q92785 391 aa20.62■□□□□ 0.89
VIM-209ENST00000544301 FANCLQ9NW38 375 aa20.62■□□□□ 0.89
VIM-209ENST00000544301 MKRN1Q9UHC7 482 aaKnown RBP20.62■□□□□ 0.89
VIM-209ENST00000544301 PAXBP1Q9Y5B6 917 aa20.62■□□□□ 0.89
VIM-209ENST00000544301 SBF2Q86WG5 1849 aa20.62■□□□□ 0.89
VIM-209ENST00000544301 WNT7AO00755 349 aa20.61■□□□□ 0.89
VIM-209ENST00000544301 CTIFO43310 598 aaKnown RBP20.61■□□□□ 0.89
VIM-209ENST00000544301 CBFA2T2O43439 604 aa20.61■□□□□ 0.89
VIM-209ENST00000544301 SERPINC1P01008 464 aa20.61■□□□□ 0.89
VIM-209ENST00000544301 LDHBP07195 334 aaKnown RBP20.61■□□□□ 0.89
VIM-209ENST00000544301 DHX8Q14562 1220 aaKnown RBP20.61■□□□□ 0.89
VIM-209ENST00000544301 NOM1Q5C9Z4 860 aaKnown RBP20.61■□□□□ 0.89
VIM-209ENST00000544301 CEP135Q66GS9 1140 aa20.61■□□□□ 0.89
VIM-209ENST00000544301 RCSD1Q6JBY9 416 aa20.61■□□□□ 0.89
VIM-209ENST00000544301 SMARCE1Q969G3 411 aa20.61■□□□□ 0.89
VIM-209ENST00000544301 BMP15O95972 392 aa20.6■□□□□ 0.89
VIM-209ENST00000544301 SFPQP23246 707 aaKnown RBP eCLIP20.6■□□□□ 0.89
VIM-209ENST00000544301 MORC3Q14149 939 aa20.6■□□□□ 0.89
VIM-209ENST00000544301 IGSF3O75054 1194 aa20.6■□□□□ 0.89
VIM-209ENST00000544301 SLC4A8Q2Y0W8 1093 aa20.6■□□□□ 0.89
VIM-209ENST00000544301 C12orf60Q5U649 245 aa20.6■□□□□ 0.89
VIM-209ENST00000544301 FAM196AQ6ZSG2 479 aa20.6■□□□□ 0.89
VIM-209ENST00000544301 MLKLQ8NB16 471 aa20.6■□□□□ 0.89
VIM-209ENST00000544301 TRMT1Q9NXH9 659 aaKnown RBP20.6■□□□□ 0.89
VIM-209ENST00000544301 SCG2P13521 617 aa20.59■□□□□ 0.89
VIM-209ENST00000544301 PTPN14Q15678 1187 aa20.59■□□□□ 0.89
VIM-209ENST00000544301 TRIML1Q8N9V2 468 aa20.59■□□□□ 0.89
VIM-209ENST00000544301 CNBD1Q8NA66 436 aa20.59■□□□□ 0.89
VIM-209ENST00000544301 SPATA20Q8TB22 786 aa20.59■□□□□ 0.89
VIM-209ENST00000544301 SH3RF3Q8TEJ3 882 aaPredicted RBP20.59■□□□□ 0.89
VIM-209ENST00000544301 FERMT2Q96AC1 680 aa20.59■□□□□ 0.89
VIM-209ENST00000544301 EPSTI1Q96J88 318 aa20.59■□□□□ 0.89
VIM-209ENST00000544301 XDHP47989 1333 aa20.59■□□□□ 0.89
VIM-209ENST00000544301 A0A087X0B3 334 aa20.59■□□□□ 0.89
VIM-209ENST00000544301 USP5P45974 858 aa20.59■□□□□ 0.89
VIM-209ENST00000544301 ZNF174Q15697 407 aa20.59■□□□□ 0.89
VIM-209ENST00000544301 PFKFB3Q16875 520 aaPredicted RBP20.59■□□□□ 0.89
VIM-209ENST00000544301 TFAP4Q01664 338 aa20.58■□□□□ 0.89
VIM-209ENST00000544301 GRIK5Q16478 980 aa20.58■□□□□ 0.89
VIM-209ENST00000544301 CFAP100Q494V2 611 aa20.58■□□□□ 0.89
VIM-209ENST00000544301 TTC38Q5R3I4 469 aa20.58■□□□□ 0.89
VIM-209ENST00000544301 DACH1Q9UI36 760 aa20.58■□□□□ 0.89
VIM-209ENST00000544301 VEGFAP15692 232 aaPredicted RBP20.57■□□□□ 0.88
VIM-209ENST00000544301 KIF5BP33176 963 aa20.57■□□□□ 0.88
VIM-209ENST00000544301 GSTO1P78417 241 aa20.57■□□□□ 0.88
VIM-209ENST00000544301 FMR1Q06787 632 aaKnown RBP eCLIP20.57■□□□□ 0.88
VIM-209ENST00000544301 ZNF827Q17R98 1081 aa20.57■□□□□ 0.88
VIM-209ENST00000544301 ZNF804AQ7Z570 1209 aa20.57■□□□□ 0.88
VIM-209ENST00000544301 SYMPKQ92797 1274 aaKnown RBP20.57■□□□□ 0.88
VIM-209ENST00000544301 DHX58Q96C10 678 aa20.57■□□□□ 0.88
VIM-209ENST00000544301 KAT14Q9H8E8 782 aa20.57■□□□□ 0.88
VIM-209ENST00000544301 IL17RBQ9NRM6 502 aa20.57■□□□□ 0.88
VIM-209ENST00000544301 KCNJ6P48051 423 aa20.57■□□□□ 0.88
VIM-209ENST00000544301 NLRP5P59047 1200 aa20.57■□□□□ 0.88
VIM-209ENST00000544301 DIXDC1Q155Q3 683 aa20.57■□□□□ 0.88
VIM-209ENST00000544301 E4F1Q66K89 784 aaPredicted RBP20.57■□□□□ 0.88
VIM-209ENST00000544301 DGKHQ86XP1 1220 aa20.57■□□□□ 0.88
Retrieved 100 of 20,778 RNA–protein pairs in 41.4 ms