RNA–Protein interactions for RNA: ENST00000541169.1

VPS33A-205, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 4

Gene VPS33A, Length 594 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-205ENST00000541169 NEDD1Q8NHV4 660 aa22.23■■□□□ 1.15
VPS33A-205ENST00000541169 CFHR5Q9BXR6 569 aa22.23■■□□□ 1.15
VPS33A-205ENST00000541169 KRT23Q9C075 422 aa22.23■■□□□ 1.15
VPS33A-205ENST00000541169 KIAA1683Q9H0B3 1180 aa22.23■■□□□ 1.15
VPS33A-205ENST00000541169 ANO2Q9NQ90 1003 aa22.23■■□□□ 1.15
VPS33A-205ENST00000541169 TMOD4Q9NZQ9 345 aa22.23■■□□□ 1.15
VPS33A-205ENST00000541169 ICA1Q05084 483 aa22.22■■□□□ 1.15
VPS33A-205ENST00000541169 CTDSPL2Q05D32 466 aa22.22■■□□□ 1.15
VPS33A-205ENST00000541169 SEPT2Q15019 361 aa22.22■■□□□ 1.15
VPS33A-205ENST00000541169 CCDC178Q5BJE1 867 aa22.22■■□□□ 1.15
VPS33A-205ENST00000541169 USP17L2Q6R6M4 530 aa22.22■■□□□ 1.15
VPS33A-205ENST00000541169 ESR2Q92731 530 aa22.22■■□□□ 1.15
VPS33A-205ENST00000541169 TSPY2A6NKD2 308 aa22.21■■□□□ 1.15
VPS33A-205ENST00000541169 GUCY1A2P33402 732 aa22.21■■□□□ 1.15
VPS33A-205ENST00000541169 JAG1P78504 1218 aa22.21■■□□□ 1.15
VPS33A-205ENST00000541169 PTH1RQ03431 593 aa22.21■■□□□ 1.15
VPS33A-205ENST00000541169 TRDNQ13061 729 aa22.21■■□□□ 1.15
VPS33A-205ENST00000541169 BRI3BPQ8WY22 251 aa22.21■■□□□ 1.15
VPS33A-205ENST00000541169 ZIC5Q96T25 663 aa22.21■■□□□ 1.15
VPS33A-205ENST00000541169 FEZ1Q99689 392 aa22.21■■□□□ 1.15
VPS33A-205ENST00000541169 LSG1Q9H089 658 aaKnown RBP22.21■■□□□ 1.15
VPS33A-205ENST00000541169 NYAP2Q9P242 653 aa22.21■■□□□ 1.15
VPS33A-205ENST00000541169 GTF3C3Q9Y5Q9 886 aa22.21■■□□□ 1.15
VPS33A-205ENST00000541169 CEP350Q5VT06 3117 aa22.21■■□□□ 1.15
VPS33A-205ENST00000541169 PTPRFP10586 1907 aa22.2■■□□□ 1.14
VPS33A-205ENST00000541169 GREB1LQ9C091 1923 aaPredicted RBP22.2■■□□□ 1.14
VPS33A-205ENST00000541169 HAND2P61296 217 aa22.2■■□□□ 1.14
VPS33A-205ENST00000541169 TFAP4Q01664 338 aa22.2■■□□□ 1.14
VPS33A-205ENST00000541169 LPAR1Q92633 364 aa22.2■■□□□ 1.14
VPS33A-205ENST00000541169 C12orf42Q96LP6 360 aa22.2■■□□□ 1.14
VPS33A-205ENST00000541169 TOMM22Q9NS69 142 aa22.2■■□□□ 1.14
VPS33A-205ENST00000541169 TCP11L1Q9NUJ3 509 aa22.2■■□□□ 1.14
VPS33A-205ENST00000541169 RBM8AQ9Y5S9 174 aaKnown RBP22.2■■□□□ 1.14
VPS33A-205ENST00000541169 SMIM22K7EJ46 135 aa22.19■■□□□ 1.14
VPS33A-205ENST00000541169 RANBP6O60518 1105 aaKnown RBP22.19■■□□□ 1.14
VPS33A-205ENST00000541169 PRDM1O75626 825 aa22.19■■□□□ 1.14
VPS33A-205ENST00000541169 MTMR2Q13614 643 aa22.19■■□□□ 1.14
VPS33A-205ENST00000541169 NOM1Q5C9Z4 860 aaKnown RBP22.19■■□□□ 1.14
VPS33A-205ENST00000541169 STK11IPQ8N1F8 1099 aa22.19■■□□□ 1.14
VPS33A-205ENST00000541169 PNMA3Q9UL41 463 aa22.19■■□□□ 1.14
VPS33A-205ENST00000541169 AGTPBP1Q9UPW5 1226 aa22.19■■□□□ 1.14
VPS33A-205ENST00000541169 TMX2Q9Y320 296 aa22.19■■□□□ 1.14
VPS33A-205ENST00000541169 TTLL1O95922 423 aa22.18■■□□□ 1.14
VPS33A-205ENST00000541169 IQCA1Q86XH1 822 aa22.18■■□□□ 1.14
VPS33A-205ENST00000541169 RNF186Q9NXI6 227 aa22.18■■□□□ 1.14
VPS33A-205ENST00000541169 MTMR4Q9NYA4 1195 aa22.18■■□□□ 1.14
VPS33A-205ENST00000541169 LOC285556D6RIA3 1793 aa22.17■■□□□ 1.14
VPS33A-205ENST00000541169 IGKV6D-41A0A0C4DH26 115 aa22.17■■□□□ 1.14
VPS33A-205ENST00000541169 BTBD19C9JJ37 291 aa22.17■■□□□ 1.14
VPS33A-205ENST00000541169 CYP21A2P08686 494 aa22.17■■□□□ 1.14
VPS33A-205ENST00000541169 HMGCS2P54868 508 aa22.17■■□□□ 1.14
VPS33A-205ENST00000541169 GADL1Q6ZQY3 521 aa22.17■■□□□ 1.14
VPS33A-205ENST00000541169 TBC1D10CQ8IV04 446 aa22.17■■□□□ 1.14
VPS33A-205ENST00000541169 MKL1Q969V6 931 aa22.17■■□□□ 1.14
VPS33A-205ENST00000541169 TTC14Q96N46 770 aa22.17■■□□□ 1.14
VPS33A-205ENST00000541169 PTPN18Q99952 460 aa22.17■■□□□ 1.14
VPS33A-205ENST00000541169 NBPF3Q9H094 633 aa22.17■■□□□ 1.14
VPS33A-205ENST00000541169 GOPCQ9HD26 462 aa22.17■■□□□ 1.14
VPS33A-205ENST00000541169 FRMD4AQ9P2Q2 1039 aaPredicted RBP22.17■■□□□ 1.14
VPS33A-205ENST00000541169 IGF2BP3O00425 579 aaKnown RBP eCLIP22.16■■□□□ 1.14
VPS33A-205ENST00000541169 EEF2P13639 858 aaKnown RBP22.16■■□□□ 1.14
VPS33A-205ENST00000541169 ZKSCAN1P17029 563 aaPredicted RBP22.16■■□□□ 1.14
VPS33A-205ENST00000541169 HOXA7P31268 230 aaPredicted RBP22.16■■□□□ 1.14
VPS33A-205ENST00000541169 MOGSQ13724 837 aa22.16■■□□□ 1.14
VPS33A-205ENST00000541169 NECTIN1Q15223 517 aa22.16■■□□□ 1.14
VPS33A-205ENST00000541169 SHROOM1Q2M3G4 852 aaPredicted RBP22.16■■□□□ 1.14
VPS33A-205ENST00000541169 RRP12Q5JTH9 1297 aaKnown RBP22.16■■□□□ 1.14
VPS33A-205ENST00000541169 CCDC84Q86UT8 332 aaPredicted RBP22.16■■□□□ 1.14
VPS33A-205ENST00000541169 PARK7Q99497 189 aaKnown RBP22.16■■□□□ 1.14
VPS33A-205ENST00000541169 GNL3Q9BVP2 549 aaKnown RBP eCLIP22.16■■□□□ 1.14
VPS33A-205ENST00000541169 ZFYVE28Q9HCC9 887 aa22.16■■□□□ 1.14
VPS33A-205ENST00000541169 PDHXO00330 501 aa22.15■■□□□ 1.14
VPS33A-205ENST00000541169 TRPA1O75762 1119 aa22.15■■□□□ 1.14
VPS33A-205ENST00000541169 RALYLQ86SE5 291 aaKnown RBP22.15■■□□□ 1.14
VPS33A-205ENST00000541169 NCOA7Q8NI08 942 aa22.15■■□□□ 1.14
VPS33A-205ENST00000541169 CEP95Q96GE4 821 aa22.15■■□□□ 1.14
VPS33A-205ENST00000541169 HSPA1AP0DMV8 641 aaKnown RBP22.14■■□□□ 1.13
VPS33A-205ENST00000541169 HSPA1BP0DMV9 641 aaKnown RBP22.14■■□□□ 1.13
VPS33A-205ENST00000541169 OSBPP22059 807 aa22.14■■□□□ 1.13
VPS33A-205ENST00000541169 NOVP48745 357 aa22.14■■□□□ 1.13
VPS33A-205ENST00000541169 CTCFP49711 727 aaPredicted RBP22.14■■□□□ 1.13
VPS33A-205ENST00000541169 KRT32Q14532 448 aa22.14■■□□□ 1.13
VPS33A-205ENST00000541169 TAF1CQ15572 869 aaPredicted RBP22.14■■□□□ 1.13
VPS33A-205ENST00000541169 TSGA10IPQ3SY00 556 aa22.14■■□□□ 1.13
VPS33A-205ENST00000541169 FAM47AQ5JRC9 791 aa22.14■■□□□ 1.13
VPS33A-205ENST00000541169 GPAT2Q6NUI2 795 aa22.14■■□□□ 1.13
VPS33A-205ENST00000541169 FAM43AQ8N2R8 423 aa22.14■■□□□ 1.13
VPS33A-205ENST00000541169 GTF3C2Q8WUA4 911 aaPredicted RBP22.14■■□□□ 1.13
VPS33A-205ENST00000541169 VCPKMTQ9H867 229 aa22.14■■□□□ 1.13
VPS33A-205ENST00000541169 DGKHQ86XP1 1220 aa22.13■■□□□ 1.13
VPS33A-205ENST00000541169 SIAH1Q8IUQ4 282 aa22.13■■□□□ 1.13
VPS33A-205ENST00000541169 ACER1Q8TDN7 264 aa22.13■■□□□ 1.13
VPS33A-205ENST00000541169 MTA3Q9BTC8 594 aa22.13■■□□□ 1.13
VPS33A-205ENST00000541169 EMILIN3Q9NT22 766 aa22.13■■□□□ 1.13
VPS33A-205ENST00000541169 CLIP2Q9UDT6 1046 aa22.13■■□□□ 1.13
VPS33A-205ENST00000541169 NEDD4P46934 1319 aa22.12■■□□□ 1.13
VPS33A-205ENST00000541169 A0A1W2PRG0 241 aa22.12■■□□□ 1.13
VPS33A-205ENST00000541169 USP17L15C9J2P7 530 aa22.12■■□□□ 1.13
VPS33A-205ENST00000541169 USP17L13C9JLJ4 530 aa22.12■■□□□ 1.13
VPS33A-205ENST00000541169 USP17L11C9JVI0 530 aa22.12■■□□□ 1.13
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms