RNA–Protein interactions for RNA: ENST00000540447.5

YBX3-208, Transcript of Y-box binding protein 3, humanhuman

TSL 2

Gene YBX3, Length 6,393 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-208ENST00000540447 RNF123Q5XPI4 1314 aa9.65□□□□□ -0.86
YBX3-208ENST00000540447 ZBBXA8MT70 800 aa9.65□□□□□ -0.86
YBX3-208ENST00000540447 TBC1D8O95759 1140 aa9.65□□□□□ -0.86
YBX3-208ENST00000540447 KCNA4P22459 653 aa9.65□□□□□ -0.86
YBX3-208ENST00000540447 HAND2P61296 217 aa9.65□□□□□ -0.86
YBX3-208ENST00000540447 ITIH3Q06033 890 aa9.65□□□□□ -0.86
YBX3-208ENST00000540447 PEX26Q7Z412 305 aa9.65□□□□□ -0.86
YBX3-208ENST00000540447 ELAC2Q9BQ52 826 aaKnown RBP9.65□□□□□ -0.86
YBX3-208ENST00000540447 THUMPD2Q9BTF0 503 aaKnown RBP9.65□□□□□ -0.86
YBX3-208ENST00000540447 TMOD2Q9NZR1 351 aa9.65□□□□□ -0.86
YBX3-208ENST00000540447 FBXO2Q9UK22 296 aaPredicted RBP9.65□□□□□ -0.86
YBX3-208ENST00000540447 KCNH3Q9ULD8 1083 aa9.65□□□□□ -0.86
YBX3-208ENST00000540447 KRIT1O00522 736 aa9.65□□□□□ -0.86
YBX3-208ENST00000540447 SPAG7O75391 227 aa9.65□□□□□ -0.86
YBX3-208ENST00000540447 PMS1P54277 932 aaKnown RBP9.65□□□□□ -0.86
YBX3-208ENST00000540447 PKP1Q13835 747 aa9.65□□□□□ -0.86
YBX3-208ENST00000540447 ASIC2Q16515 512 aa9.65□□□□□ -0.86
YBX3-208ENST00000540447 LGSNQ5TDP6 509 aa9.65□□□□□ -0.86
YBX3-208ENST00000540447 UHMK1Q8TAS1 419 aaKnown RBP9.65□□□□□ -0.86
YBX3-208ENST00000540447 CCDC138Q96M89 665 aa9.65□□□□□ -0.86
YBX3-208ENST00000540447 COQ7Q99807 217 aa9.65□□□□□ -0.86
YBX3-208ENST00000540447 SBDSQ9Y3A5 250 aaKnown RBP eCLIP9.65□□□□□ -0.86
YBX3-208ENST00000540447 MINDY4BA8MYZ0 360 aa9.65□□□□□ -0.87
YBX3-208ENST00000540447 CTCFP49711 727 aaPredicted RBP9.65□□□□□ -0.87
YBX3-208ENST00000540447 MRPS35P82673 323 aaKnown RBP9.65□□□□□ -0.87
YBX3-208ENST00000540447 NLRP14Q86W24 1093 aa9.65□□□□□ -0.87
YBX3-208ENST00000540447 TRIM42Q8IWZ5 723 aa9.65□□□□□ -0.87
YBX3-208ENST00000540447 IQUBQ8NA54 791 aa9.65□□□□□ -0.87
YBX3-208ENST00000540447 SPDYE1Q8NFV5 336 aaPredicted RBP9.65□□□□□ -0.87
YBX3-208ENST00000540447 ZCRB1Q8TBF4 217 aaKnown RBP9.65□□□□□ -0.87
YBX3-208ENST00000540447 TBC1D23Q9NUY8 699 aa9.65□□□□□ -0.87
YBX3-208ENST00000540447 NOVA2Q9UNW9 492 aaKnown RBP9.65□□□□□ -0.87
YBX3-208ENST00000540447 LRRIQ3A6PVS8 624 aaPredicted RBP9.64□□□□□ -0.87
YBX3-208ENST00000540447 NR1I2O75469 434 aa9.64□□□□□ -0.87
YBX3-208ENST00000540447 GGCXP38435 758 aa9.64□□□□□ -0.87
YBX3-208ENST00000540447 NANOGNBQ7Z5D8 188 aa9.64□□□□□ -0.87
YBX3-208ENST00000540447 AFAP1L2Q8N4X5 818 aa9.64□□□□□ -0.87
YBX3-208ENST00000540447 PDLIM2Q96JY6 352 aa9.64□□□□□ -0.87
YBX3-208ENST00000540447 FTOQ9C0B1 505 aaKnown RBP eCLIP9.64□□□□□ -0.87
YBX3-208ENST00000540447 SLC12A5Q9H2X9 1139 aa9.64□□□□□ -0.87
YBX3-208ENST00000540447 VPS37BQ9H9H4 285 aa9.64□□□□□ -0.87
YBX3-208ENST00000540447 TSPY2A6NKD2 308 aa9.64□□□□□ -0.87
YBX3-208ENST00000540447 ATP5HO75947 161 aa9.64□□□□□ -0.87
YBX3-208ENST00000540447 TSPY3P0CV98 308 aa9.64□□□□□ -0.87
YBX3-208ENST00000540447 TSPY8P0CW00 308 aa9.64□□□□□ -0.87
YBX3-208ENST00000540447 SERPINB3P29508 390 aa9.64□□□□□ -0.87
YBX3-208ENST00000540447 TSPY1Q01534 308 aa9.64□□□□□ -0.87
YBX3-208ENST00000540447 DMPKQ09013 629 aa9.64□□□□□ -0.87
YBX3-208ENST00000540447 SCRN1Q12765 414 aa9.64□□□□□ -0.87
YBX3-208ENST00000540447 TNIP1Q15025 636 aa9.64□□□□□ -0.87
YBX3-208ENST00000540447 RNF41Q9H4P4 317 aaPredicted RBP9.64□□□□□ -0.87
YBX3-208ENST00000540447 AMOTL2Q9Y2J4 779 aa9.64□□□□□ -0.87
YBX3-208ENST00000540447 ZBTB43O43298 467 aa9.64□□□□□ -0.87
YBX3-208ENST00000540447 MCF2P10911 925 aa9.64□□□□□ -0.87
YBX3-208ENST00000540447 CCDC14Q49A88 953 aa9.64□□□□□ -0.87
YBX3-208ENST00000540447 ANKRD44Q8N8A2 993 aa9.64□□□□□ -0.87
YBX3-208ENST00000540447 OR8K1Q8NGG5 319 aa9.64□□□□□ -0.87
YBX3-208ENST00000540447 HAUS8Q9BT25 410 aa9.64□□□□□ -0.87
YBX3-208ENST00000540447 TMCC1O94876 653 aa9.64□□□□□ -0.87
YBX3-208ENST00000540447 PAK1Q13153 545 aa9.64□□□□□ -0.87
YBX3-208ENST00000540447 PPP2R5EQ16537 467 aa9.64□□□□□ -0.87
YBX3-208ENST00000540447 CREB3L3Q68CJ9 461 aa9.64□□□□□ -0.87
YBX3-208ENST00000540447 BICDL1Q6ZP65 573 aa9.64□□□□□ -0.87
YBX3-208ENST00000540447 TMTC3Q6ZXV5 915 aa9.64□□□□□ -0.87
YBX3-208ENST00000540447 HIC2Q96JB3 615 aa9.64□□□□□ -0.87
YBX3-208ENST00000540447 NDEL1Q9GZM8 345 aa9.64□□□□□ -0.87
YBX3-208ENST00000540447 EPB41L5Q9HCM4 733 aa9.64□□□□□ -0.87
YBX3-208ENST00000540447 CHMP2BQ9UQN3 213 aa9.64□□□□□ -0.87
YBX3-208ENST00000540447 CUX1P39880 1505 aa9.64□□□□□ -0.87
YBX3-208ENST00000540447 GMNCA6NCL1 334 aa9.64□□□□□ -0.87
YBX3-208ENST00000540447 AP1G2O75843 785 aa9.64□□□□□ -0.87
YBX3-208ENST00000540447 GNAT1P11488 350 aa9.64□□□□□ -0.87
YBX3-208ENST00000540447 HARSP12081 509 aaKnown RBP9.64□□□□□ -0.87
YBX3-208ENST00000540447 CHMLP26374 656 aa9.64□□□□□ -0.87
YBX3-208ENST00000540447 INAQ16352 499 aa9.64□□□□□ -0.87
YBX3-208ENST00000540447 PPP4R1Q8TF05 950 aa9.64□□□□□ -0.87
YBX3-208ENST00000540447 PACSIN2Q9UNF0 486 aaPredicted RBP9.64□□□□□ -0.87
YBX3-208ENST00000540447 KCNK3O14649 394 aa9.63□□□□□ -0.87
YBX3-208ENST00000540447 EEF1B2P24534 225 aaKnown RBP9.63□□□□□ -0.87
YBX3-208ENST00000540447 ANO1Q5XXA6 986 aa9.63□□□□□ -0.87
YBX3-208ENST00000540447 KSR1Q8IVT5 923 aa9.63□□□□□ -0.87
YBX3-208ENST00000540447 TMCO5AQ8N6Q1 288 aa9.63□□□□□ -0.87
YBX3-208ENST00000540447 KLHL23Q8NBE8 558 aa9.63□□□□□ -0.87
YBX3-208ENST00000540447 KIAA1468Q9P260 1216 aa9.63□□□□□ -0.87
YBX3-208ENST00000540447 ENC1O14682 589 aa9.63□□□□□ -0.87
YBX3-208ENST00000540447 DAB1O75553 588 aa9.63□□□□□ -0.87
YBX3-208ENST00000540447 KRT8P05787 483 aa9.63□□□□□ -0.87
YBX3-208ENST00000540447 TBC1D22AQ8WUA7 517 aa9.63□□□□□ -0.87
YBX3-208ENST00000540447 ARHGAP45Q92619 1136 aa9.63□□□□□ -0.87
YBX3-208ENST00000540447 SPC25Q9HBM1 224 aa9.63□□□□□ -0.87
YBX3-208ENST00000540447 PAPOLBQ9NRJ5 636 aaKnown RBP9.63□□□□□ -0.87
YBX3-208ENST00000540447 TTC21AQ8NDW8 1320 aa9.63□□□□□ -0.87
YBX3-208ENST00000540447 NUTM2BA6NNL0 878 aaPredicted RBP9.63□□□□□ -0.87
YBX3-208ENST00000540447 NUTM2EB1AL46 878 aaPredicted RBP9.63□□□□□ -0.87
YBX3-208ENST00000540447 MAPK13O15264 365 aa9.63□□□□□ -0.87
YBX3-208ENST00000540447 CDC37L1Q7L3B6 337 aa9.63□□□□□ -0.87
YBX3-208ENST00000540447 KRT12Q99456 494 aa9.63□□□□□ -0.87
YBX3-208ENST00000540447 ECT2Q9H8V3 914 aa9.63□□□□□ -0.87
YBX3-208ENST00000540447 IQCA1LA6NCM1 817 aa9.63□□□□□ -0.87
YBX3-208ENST00000540447 RANBP6O60518 1105 aaKnown RBP9.63□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 108.3 ms