RNA–Protein interactions for RNA: ENST00000539232.1

LMO3-220, Transcript of LIM domain only 3, humanhuman

TSL 5

Gene LMO3, Length 580 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LMO3-220ENST00000539232 TTF1Q15361 905 aaPredicted RBP8.74□□□□□ -1.01
LMO3-220ENST00000539232 UBE3CQ15386 1083 aa8.74□□□□□ -1.01
LMO3-220ENST00000539232 KIAA1755Q5JYT7 1200 aa8.74□□□□□ -1.01
LMO3-220ENST00000539232 TATDN1Q6P1N9 297 aa8.74□□□□□ -1.01
LMO3-220ENST00000539232 C17orf99Q6UX52 265 aa8.74□□□□□ -1.01
LMO3-220ENST00000539232 GADL1Q6ZQY3 521 aa8.74□□□□□ -1.01
LMO3-220ENST00000539232 CCDC129Q6ZRS4 1044 aa8.74□□□□□ -1.01
LMO3-220ENST00000539232 ANKRD23Q86SG2 305 aa8.74□□□□□ -1.01
LMO3-220ENST00000539232 FOXP4Q8IVH2 680 aaPredicted RBP8.74□□□□□ -1.01
LMO3-220ENST00000539232 SMC5Q8IY18 1101 aa8.74□□□□□ -1.01
LMO3-220ENST00000539232 C7orf61Q8IZ16 206 aa8.74□□□□□ -1.01
LMO3-220ENST00000539232 KBTBD3Q8NAB2 608 aa8.74□□□□□ -1.01
LMO3-220ENST00000539232 TRIM47Q96LD4 638 aa8.74□□□□□ -1.01
LMO3-220ENST00000539232 STRBPQ96SI9 672 aaKnown RBP8.74□□□□□ -1.01
LMO3-220ENST00000539232 EPB41L4AQ9HCS5 686 aaPredicted RBP8.74□□□□□ -1.01
LMO3-220ENST00000539232 MCM9Q9NXL9 1143 aa8.74□□□□□ -1.01
LMO3-220ENST00000539232 HCN4Q9Y3Q4 1203 aa8.74□□□□□ -1.01
LMO3-220ENST00000539232 COL2A1P02458 1487 aaPredicted RBP8.73□□□□□ -1.01
LMO3-220ENST00000539232 GSG1L2A8MUP6 293 aa8.73□□□□□ -1.01
LMO3-220ENST00000539232 USP17L12C9JPN9 530 aa8.73□□□□□ -1.01
LMO3-220ENST00000539232 USP17L21D6R901 530 aa8.73□□□□□ -1.01
LMO3-220ENST00000539232 RNF113AO15541 343 aaKnown RBP8.73□□□□□ -1.01
LMO3-220ENST00000539232 TLR2O60603 784 aa8.73□□□□□ -1.01
LMO3-220ENST00000539232 MX1P20591 662 aa8.73□□□□□ -1.01
LMO3-220ENST00000539232 PDE4AP27815 886 aa8.73□□□□□ -1.01
LMO3-220ENST00000539232 HOXD10P28358 340 aa8.73□□□□□ -1.01
LMO3-220ENST00000539232 PDE1AP54750 535 aa8.73□□□□□ -1.01
LMO3-220ENST00000539232 MTMR2Q13614 643 aa8.73□□□□□ -1.01
LMO3-220ENST00000539232 CTR9Q6PD62 1173 aa8.73□□□□□ -1.01
LMO3-220ENST00000539232 SKAP1Q86WV1 359 aa8.73□□□□□ -1.01
LMO3-220ENST00000539232 SIAH1Q8IUQ4 282 aa8.73□□□□□ -1.01
LMO3-220ENST00000539232 STK11IPQ8N1F8 1099 aa8.73□□□□□ -1.01
LMO3-220ENST00000539232 CRACR2BQ8N4Y2 399 aaPredicted RBP8.73□□□□□ -1.01
LMO3-220ENST00000539232 RAET1EQ8TD07 263 aa8.73□□□□□ -1.01
LMO3-220ENST00000539232 C1QTNF1Q9BXJ1 281 aa8.73□□□□□ -1.01
LMO3-220ENST00000539232 DHX36Q9H2U1 1008 aaKnown RBP8.73□□□□□ -1.01
LMO3-220ENST00000539232 EMILIN3Q9NT22 766 aa8.73□□□□□ -1.01
LMO3-220ENST00000539232 BIN2Q9UBW5 565 aaPredicted RBP8.73□□□□□ -1.01
LMO3-220ENST00000539232 SRRDQ9UH36 339 aa8.73□□□□□ -1.01
LMO3-220ENST00000539232 HERC5Q9UII4 1024 aaKnown RBP8.73□□□□□ -1.01
LMO3-220ENST00000539232 ZBTB21Q9ULJ3 1066 aa8.73□□□□□ -1.01
LMO3-220ENST00000539232 TACC3Q9Y6A5 838 aa8.73□□□□□ -1.01
LMO3-220ENST00000539232 A0A1W2PRG0 241 aa8.72□□□□□ -1.01
LMO3-220ENST00000539232 USP17L5A8MUK1 530 aa8.72□□□□□ -1.01
LMO3-220ENST00000539232 POLR3DP05423 398 aaPredicted RBP8.72□□□□□ -1.01
LMO3-220ENST00000539232 AKR1B1P15121 316 aa8.72□□□□□ -1.01
LMO3-220ENST00000539232 SEPT2Q15019 361 aa8.72□□□□□ -1.01
LMO3-220ENST00000539232 ZYXQ15942 572 aaKnown RBP8.72□□□□□ -1.01
LMO3-220ENST00000539232 NECAB2Q7Z6G3 386 aa8.72□□□□□ -1.01
LMO3-220ENST00000539232 ZNF280CQ8ND82 737 aa8.72□□□□□ -1.01
LMO3-220ENST00000539232 GNL3Q9BVP2 549 aaKnown RBP eCLIP8.72□□□□□ -1.01
LMO3-220ENST00000539232 CRNKL1Q9BZJ0 848 aaKnown RBP8.72□□□□□ -1.01
LMO3-220ENST00000539232 EHD4Q9H223 541 aa8.72□□□□□ -1.01
LMO3-220ENST00000539232 INCENPQ9NQS7 918 aa8.72□□□□□ -1.01
LMO3-220ENST00000539232 SERPINB13Q9UIV8 391 aa8.72□□□□□ -1.01
LMO3-220ENST00000539232 SLC4A4Q9Y6R1 1079 aa8.72□□□□□ -1.01
LMO3-220ENST00000539232 TFRCP02786 760 aaKnown RBP8.71□□□□□ -1.02
LMO3-220ENST00000539232 BCRP11274 1271 aa8.71□□□□□ -1.02
LMO3-220ENST00000539232 NUCB1Q02818 461 aa8.71□□□□□ -1.02
LMO3-220ENST00000539232 ZMYM1Q5SVZ6 1142 aa8.71□□□□□ -1.02
LMO3-220ENST00000539232 C12orf60Q5U649 245 aa8.71□□□□□ -1.02
LMO3-220ENST00000539232 PLEKHM2Q8IWE5 1019 aa8.71□□□□□ -1.02
LMO3-220ENST00000539232 UBE2Q2Q8WVN8 375 aa8.71□□□□□ -1.02
LMO3-220ENST00000539232 PAWRQ96IZ0 340 aaKnown RBP8.71□□□□□ -1.02
LMO3-220ENST00000539232 FAM227BQ96M60 508 aa8.71□□□□□ -1.02
LMO3-220ENST00000539232 WDR18Q9BV38 432 aa8.71□□□□□ -1.02
LMO3-220ENST00000539232 UNC93B1Q9H1C4 597 aa8.71□□□□□ -1.02
LMO3-220ENST00000539232 TXNRD2Q9NNW7 524 aa8.71□□□□□ -1.02
LMO3-220ENST00000539232 OTOFQ9HC10 1997 aa8.71□□□□□ -1.02
LMO3-220ENST00000539232 GPAA1O43292 621 aa8.7□□□□□ -1.02
LMO3-220ENST00000539232 IGSF3O75054 1194 aa8.7□□□□□ -1.02
LMO3-220ENST00000539232 GLRX3O76003 335 aaKnown RBP8.7□□□□□ -1.02
LMO3-220ENST00000539232 HLA-DOAP06340 250 aa8.7□□□□□ -1.02
LMO3-220ENST00000539232 SYN1P17600 705 aa8.7□□□□□ -1.02
LMO3-220ENST00000539232 CDK8P49336 464 aa8.7□□□□□ -1.02
LMO3-220ENST00000539232 BACE1P56817 501 aa8.7□□□□□ -1.02
LMO3-220ENST00000539232 RAB3GAP1Q15042 981 aa8.7□□□□□ -1.02
LMO3-220ENST00000539232 CERKLQ49MI3 558 aaPredicted RBP8.7□□□□□ -1.02
LMO3-220ENST00000539232 SH3D19Q5HYK7 790 aa8.7□□□□□ -1.02
LMO3-220ENST00000539232 VPS53Q5VIR6 699 aa8.7□□□□□ -1.02
LMO3-220ENST00000539232 ALYREFQ86V81 257 aaKnown RBP8.7□□□□□ -1.02
LMO3-220ENST00000539232 CHD1LQ86WJ1 897 aa8.7□□□□□ -1.02
LMO3-220ENST00000539232 ANKRD13CQ8N6S4 541 aa8.7□□□□□ -1.02
LMO3-220ENST00000539232 APPBP2Q92624 585 aa8.7□□□□□ -1.02
LMO3-220ENST00000539232 P2RX7Q99572 595 aaKnown RBP8.7□□□□□ -1.02
LMO3-220ENST00000539232 FSD1Q9BTV5 496 aa8.7□□□□□ -1.02
LMO3-220ENST00000539232 DDX24Q9GZR7 859 aaKnown RBP eCLIP8.7□□□□□ -1.02
LMO3-220ENST00000539232 ASCC2Q9H1I8 757 aaPredicted RBP8.7□□□□□ -1.02
LMO3-220ENST00000539232 SEMA6BQ9H3T3 888 aa8.7□□□□□ -1.02
LMO3-220ENST00000539232 RWDD1Q9H446 243 aaPredicted RBP8.7□□□□□ -1.02
LMO3-220ENST00000539232 GABRQQ9UN88 632 aa8.7□□□□□ -1.02
LMO3-220ENST00000539232 AGTPBP1Q9UPW5 1226 aa8.7□□□□□ -1.02
LMO3-220ENST00000539232 TTC41PQ6P2S7 1318 aa8.7□□□□□ -1.02
LMO3-220ENST00000539232 A0A0D9SFI3 127 aa8.69□□□□□ -1.02
LMO3-220ENST00000539232 PRDM1O75626 825 aa8.69□□□□□ -1.02
LMO3-220ENST00000539232 ASNSP08243 561 aa8.69□□□□□ -1.02
LMO3-220ENST00000539232 OSBPP22059 807 aa8.69□□□□□ -1.02
LMO3-220ENST00000539232 DEKP35659 375 aaKnown RBP8.69□□□□□ -1.02
LMO3-220ENST00000539232 PSMC4P43686 418 aa8.69□□□□□ -1.02
LMO3-220ENST00000539232 ABCB5Q2M3G0 1257 aa8.69□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 41 ms