RNA–Protein interactions for RNA: ENST00000538224.1

USP28-206, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 582 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-206ENST00000538224 TUBE1Q9UJT0 475 aa7.61□□□□□ -1.19
USP28-206ENST00000538224 KCNH3Q9ULD8 1083 aa7.61□□□□□ -1.19
USP28-206ENST00000538224 SUGT1Q9Y2Z0 365 aa7.61□□□□□ -1.19
USP28-206ENST00000538224 SRPRBQ9Y5M8 271 aaKnown RBP7.61□□□□□ -1.19
USP28-206ENST00000538224 COL11A2P13942 1736 aaPredicted RBP7.61□□□□□ -1.19
USP28-206ENST00000538224 AP5Z1O43299 807 aa7.6□□□□□ -1.19
USP28-206ENST00000538224 WDHD1O75717 1129 aaPredicted RBP7.6□□□□□ -1.19
USP28-206ENST00000538224 UFL1O94874 794 aa7.6□□□□□ -1.19
USP28-206ENST00000538224 SERPINB2P05120 415 aa7.6□□□□□ -1.19
USP28-206ENST00000538224 SCG2P13521 617 aa7.6□□□□□ -1.19
USP28-206ENST00000538224 MYL5Q02045 173 aa7.6□□□□□ -1.19
USP28-206ENST00000538224 FUT2Q10981 343 aa7.6□□□□□ -1.19
USP28-206ENST00000538224 C12orf60Q5U649 245 aa7.6□□□□□ -1.19
USP28-206ENST00000538224 GALNT17Q6IS24 598 aa7.6□□□□□ -1.19
USP28-206ENST00000538224 SHC4Q6S5L8 630 aa7.6□□□□□ -1.19
USP28-206ENST00000538224 KRBA2Q6ZNG9 492 aa7.6□□□□□ -1.19
USP28-206ENST00000538224 CCDC150Q8NCX0 1101 aa7.6□□□□□ -1.19
USP28-206ENST00000538224 FLAD1Q8NFF5 587 aa7.6□□□□□ -1.19
USP28-206ENST00000538224 CCDC148Q8NFR7 591 aa7.6□□□□□ -1.19
USP28-206ENST00000538224 KIAA1524Q8TCG1 905 aa7.6□□□□□ -1.19
USP28-206ENST00000538224 TTC12Q9H892 705 aaPredicted RBP7.6□□□□□ -1.19
USP28-206ENST00000538224 MKNK2Q9HBH9 465 aa7.6□□□□□ -1.19
USP28-206ENST00000538224 MCM9Q9NXL9 1143 aa7.6□□□□□ -1.19
USP28-206ENST00000538224 FBXO2Q9UK22 296 aaPredicted RBP7.6□□□□□ -1.19
USP28-206ENST00000538224 FAM205AQ6ZU69 1335 aa7.59□□□□□ -1.19
USP28-206ENST00000538224 TNS1Q9HBL0 1735 aaKnown RBP7.59□□□□□ -1.19
USP28-206ENST00000538224 KLRG2A4D1S0 409 aaPredicted RBP7.59□□□□□ -1.19
USP28-206ENST00000538224 SMC2O95347 1197 aa7.59□□□□□ -1.19
USP28-206ENST00000538224 TSPY3P0CV98 308 aa7.59□□□□□ -1.19
USP28-206ENST00000538224 TSPY8P0CW00 308 aa7.59□□□□□ -1.19
USP28-206ENST00000538224 PTGS1P23219 599 aa7.59□□□□□ -1.19
USP28-206ENST00000538224 GUCY1A2P33402 732 aa7.59□□□□□ -1.19
USP28-206ENST00000538224 PKN1Q16512 942 aa7.59□□□□□ -1.19
USP28-206ENST00000538224 PFKFB3Q16875 520 aaPredicted RBP7.59□□□□□ -1.19
USP28-206ENST00000538224 DPCR1Q3MIW9 517 aa7.59□□□□□ -1.19
USP28-206ENST00000538224 PPP4R3BQ5MIZ7 849 aa7.59□□□□□ -1.19
USP28-206ENST00000538224 CCDC186Q7Z3E2 898 aa7.59□□□□□ -1.19
USP28-206ENST00000538224 KRT27Q7Z3Y8 459 aa7.59□□□□□ -1.19
USP28-206ENST00000538224 ZNF444Q8N0Y2 327 aaPredicted RBP7.59□□□□□ -1.19
USP28-206ENST00000538224 STK11IPQ8N1F8 1099 aa7.59□□□□□ -1.19
USP28-206ENST00000538224 CCDC12Q8WUD4 166 aaPredicted RBP7.59□□□□□ -1.19
USP28-206ENST00000538224 FAM163AQ96GL9 167 aaPredicted RBP7.59□□□□□ -1.19
USP28-206ENST00000538224 TMX4Q9H1E5 349 aaPredicted RBP7.59□□□□□ -1.19
USP28-206ENST00000538224 KCNF1Q9H3M0 494 aa7.59□□□□□ -1.19
USP28-206ENST00000538224 CD209Q9NNX6 404 aa7.59□□□□□ -1.19
USP28-206ENST00000538224 TAOK2Q9UL54 1235 aa7.59□□□□□ -1.19
USP28-206ENST00000538224 KCNJ14Q9UNX9 436 aa7.59□□□□□ -1.19
USP28-206ENST00000538224 R3HCC1Q9Y3T6 440 aaKnown RBP7.59□□□□□ -1.19
USP28-206ENST00000538224 PLIN4Q96Q06 1357 aa7.59□□□□□ -1.2
USP28-206ENST00000538224 GREB1LQ9C091 1923 aaPredicted RBP7.58□□□□□ -1.2
USP28-206ENST00000538224 GAKO14976 1311 aa7.58□□□□□ -1.2
USP28-206ENST00000538224 MYO3BQ8WXR4 1341 aa7.58□□□□□ -1.2
USP28-206ENST00000538224 CYP2D7A0A087X1C5 515 aa7.58□□□□□ -1.2
USP28-206ENST00000538224 GPR75-ASB3A0A0A6YYF3 556 aa7.58□□□□□ -1.2
USP28-206ENST00000538224 hCG_1984214I3L0E3 225 aa7.58□□□□□ -1.2
USP28-206ENST00000538224 KIF2AO00139 706 aaPredicted RBP7.58□□□□□ -1.2
USP28-206ENST00000538224 DYNC1I1O14576 645 aa7.58□□□□□ -1.2
USP28-206ENST00000538224 PPEF1O14829 653 aaPredicted RBP7.58□□□□□ -1.2
USP28-206ENST00000538224 PRDM1O75626 825 aa7.58□□□□□ -1.2
USP28-206ENST00000538224 PLEKHA8P1O95397 391 aa7.58□□□□□ -1.2
USP28-206ENST00000538224 TXLNAP40222 546 aa7.58□□□□□ -1.2
USP28-206ENST00000538224 KCNJ6P48051 423 aa7.58□□□□□ -1.2
USP28-206ENST00000538224 TOB1P50616 345 aaPredicted RBP7.58□□□□□ -1.2
USP28-206ENST00000538224 GPSM2P81274 684 aa7.58□□□□□ -1.2
USP28-206ENST00000538224 TFAP4Q01664 338 aa7.58□□□□□ -1.2
USP28-206ENST00000538224 SEMA3FQ13275 785 aa7.58□□□□□ -1.2
USP28-206ENST00000538224 GRM4Q14833 912 aa7.58□□□□□ -1.2
USP28-206ENST00000538224 POSTNQ15063 836 aa7.58□□□□□ -1.2
USP28-206ENST00000538224 NT5DC1Q5TFE4 455 aa7.58□□□□□ -1.2
USP28-206ENST00000538224 MTERF4Q7Z6M4 381 aaKnown RBP7.58□□□□□ -1.2
USP28-206ENST00000538224 TXNRD3Q86VQ6 643 aa7.58□□□□□ -1.2
USP28-206ENST00000538224 AMIGO3Q86WK7 504 aa7.58□□□□□ -1.2
USP28-206ENST00000538224 SP8Q8IXZ3 490 aa7.58□□□□□ -1.2
USP28-206ENST00000538224 TEX11Q8IYF3 940 aa7.58□□□□□ -1.2
USP28-206ENST00000538224 ZNF713Q8N859 430 aaPredicted RBP7.58□□□□□ -1.2
USP28-206ENST00000538224 MLKLQ8NB16 471 aa7.58□□□□□ -1.2
USP28-206ENST00000538224 PNMA1Q8ND90 353 aa7.58□□□□□ -1.2
USP28-206ENST00000538224 SMARCE1Q969G3 411 aa7.58□□□□□ -1.2
USP28-206ENST00000538224 RTFDC1Q9BY42 306 aaPredicted RBP7.58□□□□□ -1.2
USP28-206ENST00000538224 OSBPL5Q9H0X9 879 aaPredicted RBP7.58□□□□□ -1.2
USP28-206ENST00000538224 CABP5Q9NP86 173 aa7.58□□□□□ -1.2
USP28-206ENST00000538224 LRRC4BQ9NT99 713 aa7.58□□□□□ -1.2
USP28-206ENST00000538224 VPS54Q9P1Q0 977 aa7.58□□□□□ -1.2
USP28-206ENST00000538224 MKRN1Q9UHC7 482 aaKnown RBP7.58□□□□□ -1.2
USP28-206ENST00000538224 V9GY48 417 aaPredicted RBP7.58□□□□□ -1.2
USP28-206ENST00000538224 SNED1Q8TER0 1413 aa7.58□□□□□ -1.2
USP28-206ENST00000538224 MYH4Q9Y623 1939 aa7.58□□□□□ -1.2
USP28-206ENST00000538224 PSME4Q14997 1843 aa7.57□□□□□ -1.2
USP28-206ENST00000538224 ARFGEF1Q9Y6D6 1849 aa7.57□□□□□ -1.2
USP28-206ENST00000538224 UQCRHLA0A096LP55 91 aa7.57□□□□□ -1.2
USP28-206ENST00000538224 WTIPA6NIX2 430 aaPredicted RBP7.57□□□□□ -1.2
USP28-206ENST00000538224 POLRMTO00411 1230 aaKnown RBP7.57□□□□□ -1.2
USP28-206ENST00000538224 LAD1O00515 517 aa7.57□□□□□ -1.2
USP28-206ENST00000538224 CCP110O43303 1012 aa7.57□□□□□ -1.2
USP28-206ENST00000538224 UQCRHP07919 91 aa7.57□□□□□ -1.2
USP28-206ENST00000538224 SMARCA1P28370 1054 aa7.57□□□□□ -1.2
USP28-206ENST00000538224 ALDH1B1P30837 517 aa7.57□□□□□ -1.2
USP28-206ENST00000538224 HSPA1LP34931 641 aa7.57□□□□□ -1.2
USP28-206ENST00000538224 BTDP43251 543 aa7.57□□□□□ -1.2
USP28-206ENST00000538224 NLRP5P59047 1200 aa7.57□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms