RNA–Protein interactions for RNA: ENST00000527720.5

USH1C-207, Transcript of USH1 protein network component harmonin, humanhuman

TSL 1 (best) BASIC

Gene USH1C, Length 2,278 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH1C-207ENST00000527720 TXNRD3Q86VQ6 643 aa17.59■□□□□ 0.41
USH1C-207ENST00000527720 AMIGO3Q86WK7 504 aa17.59■□□□□ 0.41
USH1C-207ENST00000527720 TRIML1Q8N9V2 468 aa17.59■□□□□ 0.41
USH1C-207ENST00000527720 SHISA4Q96DD7 197 aa17.59■□□□□ 0.41
USH1C-207ENST00000527720 CCDC34Q96HJ3 373 aa17.59■□□□□ 0.41
USH1C-207ENST00000527720 FANCCQ00597 558 aa17.58■□□□□ 0.4
USH1C-207ENST00000527720 FOXP4Q8IVH2 680 aaPredicted RBP17.58■□□□□ 0.4
USH1C-207ENST00000527720 HSD3B7Q9H2F3 369 aa17.58■□□□□ 0.4
USH1C-207ENST00000527720 DACH1Q9UI36 760 aa17.58■□□□□ 0.4
USH1C-207ENST00000527720 XDHP47989 1333 aa17.58■□□□□ 0.4
USH1C-207ENST00000527720 ROBO3Q96MS0 1386 aa17.58■□□□□ 0.4
USH1C-207ENST00000527720 POLR2DO15514 142 aaKnown RBP17.58■□□□□ 0.4
USH1C-207ENST00000527720 LDHBP07195 334 aaKnown RBP17.58■□□□□ 0.4
USH1C-207ENST00000527720 CCDC178Q5BJE1 867 aa17.58■□□□□ 0.4
USH1C-207ENST00000527720 CCDC24Q8N4L8 307 aa17.58■□□□□ 0.4
USH1C-207ENST00000527720 FERMT2Q96AC1 680 aa17.58■□□□□ 0.4
USH1C-207ENST00000527720 ANKIB1Q9P2G1 1089 aa17.58■□□□□ 0.4
USH1C-207ENST00000527720 SARSP49591 514 aaKnown RBP17.57■□□□□ 0.4
USH1C-207ENST00000527720 GRIN1Q05586 938 aa17.57■□□□□ 0.4
USH1C-207ENST00000527720 ARID5BQ14865 1188 aa17.57■□□□□ 0.4
USH1C-207ENST00000527720 TPD52L1Q16890 204 aaPredicted RBP17.57■□□□□ 0.4
USH1C-207ENST00000527720 ZNF804AQ7Z570 1209 aa17.57■□□□□ 0.4
USH1C-207ENST00000527720 CERS3Q8IU89 383 aa17.57■□□□□ 0.4
USH1C-207ENST00000527720 CNBD1Q8NA66 436 aa17.57■□□□□ 0.4
USH1C-207ENST00000527720 TNFRSF25Q93038 417 aa17.57■□□□□ 0.4
USH1C-207ENST00000527720 MKRN1Q9UHC7 482 aaKnown RBP17.57■□□□□ 0.4
USH1C-207ENST00000527720 PAXBP1Q9Y5B6 917 aa17.57■□□□□ 0.4
USH1C-207ENST00000527720 TSPY2A6NKD2 308 aa17.56■□□□□ 0.4
USH1C-207ENST00000527720 KIF5BP33176 963 aa17.56■□□□□ 0.4
USH1C-207ENST00000527720 KCNJ6P48051 423 aa17.56■□□□□ 0.4
USH1C-207ENST00000527720 NFIXQ14938 502 aa17.56■□□□□ 0.4
USH1C-207ENST00000527720 SPECC1Q5M775 1068 aa17.56■□□□□ 0.4
USH1C-207ENST00000527720 ISM2Q6H9L7 571 aa17.56■□□□□ 0.4
USH1C-207ENST00000527720 MLKLQ8NB16 471 aa17.56■□□□□ 0.4
USH1C-207ENST00000527720 MCM9Q9NXL9 1143 aa17.56■□□□□ 0.4
USH1C-207ENST00000527720 NRDCO43847 1150 aa17.56■□□□□ 0.4
USH1C-207ENST00000527720 TNNT1P13805 278 aa17.56■□□□□ 0.4
USH1C-207ENST00000527720 LMOD1P29536 600 aaPredicted RBP17.56■□□□□ 0.4
USH1C-207ENST00000527720 PPP4CP60510 307 aa17.56■□□□□ 0.4
USH1C-207ENST00000527720 C12orf60Q5U649 245 aa17.56■□□□□ 0.4
USH1C-207ENST00000527720 TMC6Q7Z403 805 aa17.56■□□□□ 0.4
USH1C-207ENST00000527720 DGKHQ86XP1 1220 aa17.56■□□□□ 0.4
USH1C-207ENST00000527720 SRBD1Q8N5C6 995 aaKnown RBP17.56■□□□□ 0.4
USH1C-207ENST00000527720 ANKS1AQ92625 1134 aa17.56■□□□□ 0.4
USH1C-207ENST00000527720 C16orf45Q96MC5 204 aaPredicted RBP17.56■□□□□ 0.4
USH1C-207ENST00000527720 CSRNP2Q9H175 543 aa17.56■□□□□ 0.4
USH1C-207ENST00000527720 SERTAD1Q9UHV2 236 aa17.56■□□□□ 0.4
USH1C-207ENST00000527720 ACTN4O43707 911 aaKnown RBP17.55■□□□□ 0.4
USH1C-207ENST00000527720 BAG3O95817 575 aa17.55■□□□□ 0.4
USH1C-207ENST00000527720 LDHCP07864 332 aa17.55■□□□□ 0.4
USH1C-207ENST00000527720 TRAPPC10P48553 1259 aa17.55■□□□□ 0.4
USH1C-207ENST00000527720 RBM10P98175 930 aaKnown RBP17.55■□□□□ 0.4
USH1C-207ENST00000527720 CT47A1Q5JQC4 288 aaPredicted RBP17.55■□□□□ 0.4
USH1C-207ENST00000527720 FAM47AQ5JRC9 791 aa17.55■□□□□ 0.4
USH1C-207ENST00000527720 AMOTL1Q8IY63 956 aa17.55■□□□□ 0.4
USH1C-207ENST00000527720 SMARCE1Q969G3 411 aa17.55■□□□□ 0.4
USH1C-207ENST00000527720 MAN1B1Q9UKM7 699 aa17.55■□□□□ 0.4
USH1C-207ENST00000527720 RIOK3O14730 519 aaKnown RBP17.55■□□□□ 0.4
USH1C-207ENST00000527720 CYP2D6P10635 497 aa17.55■□□□□ 0.4
USH1C-207ENST00000527720 SCG2P13521 617 aa17.55■□□□□ 0.4
USH1C-207ENST00000527720 NPY5RQ15761 445 aa17.55■□□□□ 0.4
USH1C-207ENST00000527720 PFKFB3Q16875 520 aaPredicted RBP17.55■□□□□ 0.4
USH1C-207ENST00000527720 SPATA20Q8TB22 786 aa17.55■□□□□ 0.4
USH1C-207ENST00000527720 CERKQ8TCT0 537 aa17.55■□□□□ 0.4
USH1C-207ENST00000527720 GJD4Q96KN9 370 aaPredicted RBP17.55■□□□□ 0.4
USH1C-207ENST00000527720 SFPQP23246 707 aaKnown RBP eCLIP17.54■□□□□ 0.4
USH1C-207ENST00000527720 USP5P45974 858 aa17.54■□□□□ 0.4
USH1C-207ENST00000527720 MORC3Q14149 939 aa17.54■□□□□ 0.4
USH1C-207ENST00000527720 RCSD1Q6JBY9 416 aa17.54■□□□□ 0.4
USH1C-207ENST00000527720 FAM196AQ6ZSG2 479 aa17.54■□□□□ 0.4
USH1C-207ENST00000527720 BAZ2BQ9UIF8 2168 aaKnown RBP17.54■□□□□ 0.4
USH1C-207ENST00000527720 ONECUT3O60422 494 aaPredicted RBP17.54■□□□□ 0.4
USH1C-207ENST00000527720 NMT2O60551 498 aa17.54■□□□□ 0.4
USH1C-207ENST00000527720 ATP2B1P20020 1258 aa17.54■□□□□ 0.4
USH1C-207ENST00000527720 BMP6P22004 513 aa17.54■□□□□ 0.4
USH1C-207ENST00000527720 UBASH3AP57075 661 aa17.54■□□□□ 0.4
USH1C-207ENST00000527720 EVX2Q03828 476 aa17.54■□□□□ 0.4
USH1C-207ENST00000527720 KAT14Q9H8E8 782 aa17.54■□□□□ 0.4
USH1C-207ENST00000527720 SH3GLB2Q9NR46 395 aa17.54■□□□□ 0.4
USH1C-207ENST00000527720 TCP11L1Q9NUJ3 509 aa17.54■□□□□ 0.4
USH1C-207ENST00000527720 KIF2AO00139 706 aaPredicted RBP17.53■□□□□ 0.4
USH1C-207ENST00000527720 FOXN1O15353 648 aa17.53■□□□□ 0.4
USH1C-207ENST00000527720 CTIFO43310 598 aaKnown RBP17.53■□□□□ 0.4
USH1C-207ENST00000527720 SERPINC1P01008 464 aa17.53■□□□□ 0.4
USH1C-207ENST00000527720 USP17L8P0C7I0 530 aa17.53■□□□□ 0.4
USH1C-207ENST00000527720 EARS2Q5JPH6 523 aaKnown RBP17.53■□□□□ 0.4
USH1C-207ENST00000527720 FAM182BQ5T319 152 aa17.53■□□□□ 0.4
USH1C-207ENST00000527720 NYAP1Q6ZVC0 841 aa17.53■□□□□ 0.4
USH1C-207ENST00000527720 CCAR2Q8N163 923 aaKnown RBP17.53■□□□□ 0.4
USH1C-207ENST00000527720 DDX60LQ5H9U9 1706 aaKnown RBP17.53■□□□□ 0.4
USH1C-207ENST00000527720 FAM205CA6NFA0 338 aa17.52■□□□□ 0.4
USH1C-207ENST00000527720 ATP1A3P13637 1013 aa17.52■□□□□ 0.4
USH1C-207ENST00000527720 CALML3P27482 149 aa17.52■□□□□ 0.4
USH1C-207ENST00000527720 TTC38Q5R3I4 469 aa17.52■□□□□ 0.4
USH1C-207ENST00000527720 ARMCX5Q6P1M9 558 aa17.52■□□□□ 0.4
USH1C-207ENST00000527720 ENOX1Q8TC92 643 aaKnown RBP17.52■□□□□ 0.4
USH1C-207ENST00000527720 hCG_1642624A0A1W2PR95 340 aa17.52■□□□□ 0.4
USH1C-207ENST00000527720 SLFN14P0C7P3 912 aa17.52■□□□□ 0.4
USH1C-207ENST00000527720 GNAQP50148 359 aa17.52■□□□□ 0.4
USH1C-207ENST00000527720 ATP2C1P98194 919 aaPredicted RBP17.52■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms