RNA–Protein interactions for RNA: ENST00000526025.1

CD44-222, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2 BASIC

Gene CD44, Length 1,052 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-222ENST00000526025 SH3D19Q5HYK7 790 aa24.55■■□□□ 1.52
CD44-222ENST00000526025 PRRT2Q7Z6L0 340 aaPredicted RBP24.55■■□□□ 1.52
CD44-222ENST00000526025 ESR2Q92731 530 aa24.55■■□□□ 1.52
CD44-222ENST00000526025 KRT23Q9C075 422 aa24.55■■□□□ 1.52
CD44-222ENST00000526025 TSPY2A6NKD2 308 aa24.54■■□□□ 1.52
CD44-222ENST00000526025 RANBP6O60518 1105 aaKnown RBP24.54■■□□□ 1.52
CD44-222ENST00000526025 BACE1P56817 501 aa24.54■■□□□ 1.52
CD44-222ENST00000526025 TFAP4Q01664 338 aa24.54■■□□□ 1.52
CD44-222ENST00000526025 ICA1Q05084 483 aa24.54■■□□□ 1.52
CD44-222ENST00000526025 SPP2Q13103 211 aa24.54■■□□□ 1.52
CD44-222ENST00000526025 CREB3L3Q68CJ9 461 aa24.54■■□□□ 1.52
CD44-222ENST00000526025 INCENPQ9NQS7 918 aa24.54■■□□□ 1.52
CD44-222ENST00000526025 TCP11L1Q9NUJ3 509 aa24.54■■□□□ 1.52
CD44-222ENST00000526025 ZBTB4Q9P1Z0 1013 aaPredicted RBP24.54■■□□□ 1.52
CD44-222ENST00000526025 SYNPO2Q9UMS6 1093 aa24.54■■□□□ 1.52
CD44-222ENST00000526025 NEDD4P46934 1319 aa24.54■■□□□ 1.52
CD44-222ENST00000526025 TRIM75PA6NK02 468 aa24.53■■□□□ 1.52
CD44-222ENST00000526025 USP17L10C9JJH3 530 aa24.53■■□□□ 1.52
CD44-222ENST00000526025 SLC27A2O14975 620 aa24.53■■□□□ 1.52
CD44-222ENST00000526025 MKRN3Q13064 507 aaKnown RBP24.53■■□□□ 1.52
CD44-222ENST00000526025 TSGA10IPQ3SY00 556 aa24.53■■□□□ 1.52
CD44-222ENST00000526025 FASTKD5Q7L8L6 764 aaKnown RBP24.53■■□□□ 1.52
CD44-222ENST00000526025 CCDC84Q86UT8 332 aaPredicted RBP24.53■■□□□ 1.52
CD44-222ENST00000526025 PROCA1Q8NCQ7 364 aaPredicted RBP24.53■■□□□ 1.52
CD44-222ENST00000526025 KCNB2Q92953 911 aa24.53■■□□□ 1.52
CD44-222ENST00000526025 ZIC5Q96T25 663 aa24.53■■□□□ 1.52
CD44-222ENST00000526025 KIAA1683Q9H0B3 1180 aa24.53■■□□□ 1.52
CD44-222ENST00000526025 SH2D4AQ9H788 454 aa24.53■■□□□ 1.52
CD44-222ENST00000526025 ARHGEF10LQ9HCE6 1279 aa24.53■■□□□ 1.52
CD44-222ENST00000526025 ZCCHC17Q9NP64 241 aaKnown RBP24.53■■□□□ 1.52
CD44-222ENST00000526025 TOMM22Q9NS69 142 aa24.53■■□□□ 1.52
CD44-222ENST00000526025 NYAP2Q9P242 653 aa24.53■■□□□ 1.52
CD44-222ENST00000526025 NOVP48745 357 aa24.52■■□□□ 1.52
CD44-222ENST00000526025 USP14P54578 494 aa24.52■■□□□ 1.52
CD44-222ENST00000526025 TRDNQ13061 729 aa24.52■■□□□ 1.52
CD44-222ENST00000526025 FAM47AQ5JRC9 791 aa24.52■■□□□ 1.52
CD44-222ENST00000526025 MTMR4Q9NYA4 1195 aa24.52■■□□□ 1.52
CD44-222ENST00000526025 CCL15-CCL14A0A0B4J2E2 113 aa24.51■■□□□ 1.51
CD44-222ENST00000526025 E7EWF7 191 aa24.51■■□□□ 1.51
CD44-222ENST00000526025 HSPA4P34932 840 aa24.51■■□□□ 1.51
CD44-222ENST00000526025 MAP2K1Q02750 393 aaPredicted RBP24.51■■□□□ 1.51
CD44-222ENST00000526025 MOGSQ13724 837 aa24.51■■□□□ 1.51
CD44-222ENST00000526025 CCL15Q16663 113 aa24.51■■□□□ 1.51
CD44-222ENST00000526025 RRP12Q5JTH9 1297 aaKnown RBP24.51■■□□□ 1.51
CD44-222ENST00000526025 SIAH1Q8IUQ4 282 aa24.51■■□□□ 1.51
CD44-222ENST00000526025 BRI3BPQ8WY22 251 aa24.51■■□□□ 1.51
CD44-222ENST00000526025 C12orf42Q96LP6 360 aa24.51■■□□□ 1.51
CD44-222ENST00000526025 TMX2Q9Y320 296 aa24.51■■□□□ 1.51
CD44-222ENST00000526025 MTMR2Q13614 643 aa24.5■■□□□ 1.51
CD44-222ENST00000526025 C8orf34Q49A92 452 aa24.5■■□□□ 1.51
CD44-222ENST00000526025 CCDC178Q5BJE1 867 aa24.5■■□□□ 1.51
CD44-222ENST00000526025 NCOA7Q8NI08 942 aa24.5■■□□□ 1.51
CD44-222ENST00000526025 MKL1Q969V6 931 aa24.5■■□□□ 1.51
CD44-222ENST00000526025 CEP95Q96GE4 821 aa24.5■■□□□ 1.51
CD44-222ENST00000526025 USP26Q9BXU7 913 aa24.5■■□□□ 1.51
CD44-222ENST00000526025 TTLL1O95922 423 aa24.49■■□□□ 1.51
CD44-222ENST00000526025 ALDH1A1P00352 501 aa24.49■■□□□ 1.51
CD44-222ENST00000526025 EEF2P13639 858 aaKnown RBP24.49■■□□□ 1.51
CD44-222ENST00000526025 ZKSCAN1P17029 563 aaPredicted RBP24.49■■□□□ 1.51
CD44-222ENST00000526025 OTUD7BQ6GQQ9 843 aa24.49■■□□□ 1.51
CD44-222ENST00000526025 USP17L2Q6R6M4 530 aa24.49■■□□□ 1.51
CD44-222ENST00000526025 STOX1Q6ZVD7 989 aa24.49■■□□□ 1.51
CD44-222ENST00000526025 ACER1Q8TDN7 264 aa24.49■■□□□ 1.51
CD44-222ENST00000526025 FEZ1Q99689 392 aa24.49■■□□□ 1.51
CD44-222ENST00000526025 SLC45A1Q9Y2W3 748 aa24.49■■□□□ 1.51
CD44-222ENST00000526025 B4E1Z4 1266 aa24.48■■□□□ 1.51
CD44-222ENST00000526025 KDM4AO75164 1064 aa24.48■■□□□ 1.51
CD44-222ENST00000526025 HMGCS2P54868 508 aa24.48■■□□□ 1.51
CD44-222ENST00000526025 KRT32Q14532 448 aa24.48■■□□□ 1.51
CD44-222ENST00000526025 RALYLQ86SE5 291 aaKnown RBP24.48■■□□□ 1.51
CD44-222ENST00000526025 ANKRD23Q86SG2 305 aa24.48■■□□□ 1.51
CD44-222ENST00000526025 IQCA1Q86XH1 822 aa24.48■■□□□ 1.51
CD44-222ENST00000526025 IFNL1Q8IU54 200 aa24.48■■□□□ 1.51
CD44-222ENST00000526025 TTC14Q96N46 770 aa24.48■■□□□ 1.51
CD44-222ENST00000526025 IL17RBQ9NRM6 502 aa24.48■■□□□ 1.51
CD44-222ENST00000526025 TMOD4Q9NZQ9 345 aa24.48■■□□□ 1.51
CD44-222ENST00000526025 TAF6LQ9Y6J9 622 aa24.48■■□□□ 1.51
CD44-222ENST00000526025 A0A1W2PRG0 241 aa24.47■■□□□ 1.51
CD44-222ENST00000526025 CLEC10AQ8IUN9 316 aa24.47■■□□□ 1.51
CD44-222ENST00000526025 LPAR1Q92633 364 aa24.47■■□□□ 1.51
CD44-222ENST00000526025 PTPN18Q99952 460 aa24.47■■□□□ 1.51
CD44-222ENST00000526025 MTA3Q9BTC8 594 aa24.47■■□□□ 1.51
CD44-222ENST00000526025 SAGE1Q9NXZ1 904 aa24.47■■□□□ 1.51
CD44-222ENST00000526025 ZSWIM5Q9P217 1185 aa24.47■■□□□ 1.51
CD44-222ENST00000526025 AGTPBP1Q9UPW5 1226 aa24.47■■□□□ 1.51
CD44-222ENST00000526025 IGF2BP3O00425 579 aaKnown RBP eCLIP24.46■■□□□ 1.51
CD44-222ENST00000526025 CA12O43570 354 aa24.46■■□□□ 1.51
CD44-222ENST00000526025 MCCP23508 829 aa24.46■■□□□ 1.51
CD44-222ENST00000526025 MB21D2Q8IYB1 491 aaPredicted RBP24.46■■□□□ 1.51
CD44-222ENST00000526025 CFHR5Q9BXR6 569 aa24.46■■□□□ 1.51
CD44-222ENST00000526025 EMILIN3Q9NT22 766 aa24.46■■□□□ 1.51
CD44-222ENST00000526025 BTBD19C9JJ37 291 aa24.45■■□□□ 1.5
CD44-222ENST00000526025 PABPC4Q13310 644 aaKnown RBP eCLIP24.45■■□□□ 1.5
CD44-222ENST00000526025 GPAT2Q6NUI2 795 aa24.45■■□□□ 1.5
CD44-222ENST00000526025 DGKHQ86XP1 1220 aa24.45■■□□□ 1.5
CD44-222ENST00000526025 NKX2-3Q8TAU0 364 aa24.45■■□□□ 1.5
CD44-222ENST00000526025 ANKS1AQ92625 1134 aa24.45■■□□□ 1.5
CD44-222ENST00000526025 VCPKMTQ9H867 229 aa24.45■■□□□ 1.5
CD44-222ENST00000526025 GOPCQ9HD26 462 aa24.45■■□□□ 1.5
CD44-222ENST00000526025 WBP1LQ9NX94 342 aa24.45■■□□□ 1.5
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms