RNA–Protein interactions for RNA: ENST00000520497.1

VAPB-206, Transcript of VAMP associated protein B and C, humanhuman

TSL 2

Gene VAPB, Length 937 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAPB-206ENST00000520497 TEPSINQ96N21 525 aa10□□□□□ -0.81
VAPB-206ENST00000520497 CSRNP1Q96S65 589 aa10□□□□□ -0.81
VAPB-206ENST00000520497 ZKSCAN3Q9BRR0 538 aa10□□□□□ -0.81
VAPB-206ENST00000520497 UBAC1Q9BSL1 405 aa10□□□□□ -0.81
VAPB-206ENST00000520497 TMEM39BQ9GZU3 492 aa10□□□□□ -0.81
VAPB-206ENST00000520497 IL17RBQ9NRM6 502 aa10□□□□□ -0.81
VAPB-206ENST00000520497 ADARB2Q9NS39 739 aaKnown RBP10□□□□□ -0.81
VAPB-206ENST00000520497 HERC5Q9UII4 1024 aaKnown RBP10□□□□□ -0.81
VAPB-206ENST00000520497 HACL1Q9UJ83 578 aa10□□□□□ -0.81
VAPB-206ENST00000520497 HPS5Q9UPZ3 1129 aa10□□□□□ -0.81
VAPB-206ENST00000520497 SSUH2Q9Y2M2 353 aa10□□□□□ -0.81
VAPB-206ENST00000520497 PITPNM2Q9BZ72 1349 aa10□□□□□ -0.81
VAPB-206ENST00000520497 IGKV6D-41A0A0C4DH26 115 aa9.99□□□□□ -0.81
VAPB-206ENST00000520497 ERICH2A1L162 156 aa9.99□□□□□ -0.81
VAPB-206ENST00000520497 TBC1D12O60347 775 aa9.99□□□□□ -0.81
VAPB-206ENST00000520497 NMT2O60551 498 aa9.99□□□□□ -0.81
VAPB-206ENST00000520497 TSPY3P0CV98 308 aa9.99□□□□□ -0.81
VAPB-206ENST00000520497 TSPY8P0CW00 308 aa9.99□□□□□ -0.81
VAPB-206ENST00000520497 SLURP2P0DP57 97 aa9.99□□□□□ -0.81
VAPB-206ENST00000520497 LMOD1P29536 600 aaPredicted RBP9.99□□□□□ -0.81
VAPB-206ENST00000520497 TNNI2P48788 182 aa9.99□□□□□ -0.81
VAPB-206ENST00000520497 TFAP4Q01664 338 aa9.99□□□□□ -0.81
VAPB-206ENST00000520497 FMR1Q06787 632 aaKnown RBP eCLIP9.99□□□□□ -0.81
VAPB-206ENST00000520497 SCRN1Q12765 414 aa9.99□□□□□ -0.81
VAPB-206ENST00000520497 RASA3Q14644 834 aa9.99□□□□□ -0.81
VAPB-206ENST00000520497 CCDC178Q5BJE1 867 aa9.99□□□□□ -0.81
VAPB-206ENST00000520497 DGKHQ86XP1 1220 aa9.99□□□□□ -0.81
VAPB-206ENST00000520497 ZSCAN29Q8IWY8 852 aaPredicted RBP9.99□□□□□ -0.81
VAPB-206ENST00000520497 CDAN1Q8IWY9 1227 aa9.99□□□□□ -0.81
VAPB-206ENST00000520497 NECAB1Q8N987 351 aa9.99□□□□□ -0.81
VAPB-206ENST00000520497 SPRYD3Q8NCJ5 442 aa9.99□□□□□ -0.81
VAPB-206ENST00000520497 GNL3Q9BVP2 549 aaKnown RBP eCLIP9.99□□□□□ -0.81
VAPB-206ENST00000520497 SSC5DA1L4H1 1573 aa9.98□□□□□ -0.81
VAPB-206ENST00000520497 CCDC69A6NI79 296 aa9.98□□□□□ -0.81
VAPB-206ENST00000520497 FAM196BA6NMK8 535 aa9.98□□□□□ -0.81
VAPB-206ENST00000520497 GOLGA8BA8MQT2 603 aa9.98□□□□□ -0.81
VAPB-206ENST00000520497 AKR1B1P15121 316 aa9.98□□□□□ -0.81
VAPB-206ENST00000520497 NUCB2P80303 420 aa9.98□□□□□ -0.81
VAPB-206ENST00000520497 STK3Q13188 491 aa9.98□□□□□ -0.81
VAPB-206ENST00000520497 IFIT1BQ5T764 474 aaKnown RBP9.98□□□□□ -0.81
VAPB-206ENST00000520497 ANGEL2Q5VTE6 544 aaKnown RBP9.98□□□□□ -0.81
VAPB-206ENST00000520497 CHADLQ6NUI6 762 aa9.98□□□□□ -0.81
VAPB-206ENST00000520497 APOBEC3FQ8IUX4 373 aaKnown RBP9.98□□□□□ -0.81
VAPB-206ENST00000520497 ZNF654Q8IZM8 581 aa9.98□□□□□ -0.81
VAPB-206ENST00000520497 CRACR2BQ8N4Y2 399 aaPredicted RBP9.98□□□□□ -0.81
VAPB-206ENST00000520497 CCDC17Q96LX7 622 aa9.98□□□□□ -0.81
VAPB-206ENST00000520497 TAF1DQ9H5J8 278 aaPredicted RBP9.98□□□□□ -0.81
VAPB-206ENST00000520497 GGA3Q9NZ52 723 aa9.98□□□□□ -0.81
VAPB-206ENST00000520497 ZSCAN21Q9Y5A6 473 aaPredicted RBP9.98□□□□□ -0.81
VAPB-206ENST00000520497 SMCHD1A6NHR9 2005 aa9.98□□□□□ -0.81
VAPB-206ENST00000520497 ZBTB43O43298 467 aa9.97□□□□□ -0.81
VAPB-206ENST00000520497 DDAH1O94760 285 aa9.97□□□□□ -0.81
VAPB-206ENST00000520497 CTDNEP1O95476 244 aa9.97□□□□□ -0.81
VAPB-206ENST00000520497 HSPA1AP0DMV8 641 aaKnown RBP9.97□□□□□ -0.81
VAPB-206ENST00000520497 HSPA1BP0DMV9 641 aaKnown RBP9.97□□□□□ -0.81
VAPB-206ENST00000520497 PDIA4P13667 645 aaKnown RBP9.97□□□□□ -0.81
VAPB-206ENST00000520497 PTMSP20962 102 aa9.97□□□□□ -0.81
VAPB-206ENST00000520497 TROAPQ12815 778 aa9.97□□□□□ -0.81
VAPB-206ENST00000520497 CERKLQ49MI3 558 aaPredicted RBP9.97□□□□□ -0.81
VAPB-206ENST00000520497 EAPPQ56P03 285 aaPredicted RBP9.97□□□□□ -0.81
VAPB-206ENST00000520497 NFXL1Q6ZNB6 911 aa9.97□□□□□ -0.81
VAPB-206ENST00000520497 SMARCC2Q8TAQ2 1214 aa9.97□□□□□ -0.81
VAPB-206ENST00000520497 CEP95Q96GE4 821 aa9.97□□□□□ -0.81
VAPB-206ENST00000520497 LLPHQ9BRT6 129 aaKnown RBP9.97□□□□□ -0.81
VAPB-206ENST00000520497 TRIM34Q9BYJ4 488 aa9.97□□□□□ -0.81
VAPB-206ENST00000520497 DEFB129Q9H1M3 183 aa9.97□□□□□ -0.81
VAPB-206ENST00000520497 FAM217BQ9NTX9 383 aaPredicted RBP9.97□□□□□ -0.81
VAPB-206ENST00000520497 PPP2R3BQ9Y5P8 575 aa9.97□□□□□ -0.81
VAPB-206ENST00000520497 SLC12A7Q9Y666 1083 aa9.97□□□□□ -0.81
VAPB-206ENST00000520497 RLFQ13129 1914 aa9.96□□□□□ -0.81
VAPB-206ENST00000520497 ITGBL1O95965 494 aaPredicted RBP9.96□□□□□ -0.82
VAPB-206ENST00000520497 CDC27P30260 824 aa9.96□□□□□ -0.82
VAPB-206ENST00000520497 GUCY1A2P33402 732 aa9.96□□□□□ -0.82
VAPB-206ENST00000520497 EPHX2P34913 555 aa9.96□□□□□ -0.82
VAPB-206ENST00000520497 METAP2P50579 478 aaKnown RBP eCLIP9.96□□□□□ -0.82
VAPB-206ENST00000520497 CCT2P78371 535 aaKnown RBP9.96□□□□□ -0.82
VAPB-206ENST00000520497 RRP1BQ14684 758 aaKnown RBP9.96□□□□□ -0.82
VAPB-206ENST00000520497 NTRK3Q16288 839 aa9.96□□□□□ -0.82
VAPB-206ENST00000520497 USP50Q70EL3 339 aaPredicted RBP9.96□□□□□ -0.82
VAPB-206ENST00000520497 MICU3Q86XE3 530 aa9.96□□□□□ -0.82
VAPB-206ENST00000520497 NSUN7Q8NE18 718 aaKnown RBP9.96□□□□□ -0.82
VAPB-206ENST00000520497 GBP4Q96PP9 640 aa9.96□□□□□ -0.82
VAPB-206ENST00000520497 MYL10Q9BUA6 226 aa9.96□□□□□ -0.82
VAPB-206ENST00000520497 XPO5Q9HAV4 1204 aaKnown RBP eCLIP9.96□□□□□ -0.82
VAPB-206ENST00000520497 NCOA5Q9HCD5 579 aaKnown RBP9.96□□□□□ -0.82
VAPB-206ENST00000520497 MTMR4Q9NYA4 1195 aa9.96□□□□□ -0.82
VAPB-206ENST00000520497 SCAF8Q9UPN6 1271 aaKnown RBP9.96□□□□□ -0.82
VAPB-206ENST00000520497 PASKQ96RG2 1323 aa9.96□□□□□ -0.82
VAPB-206ENST00000520497 IQCA1LA6NCM1 817 aa9.95□□□□□ -0.82
VAPB-206ENST00000520497 GOLGA8AA7E2F4 631 aa9.95□□□□□ -0.82
VAPB-206ENST00000520497 GOLGA6L22H0YM25 854 aa9.95□□□□□ -0.82
VAPB-206ENST00000520497 JAK2O60674 1132 aa9.95□□□□□ -0.82
VAPB-206ENST00000520497 RXRAP19793 462 aa9.95□□□□□ -0.82
VAPB-206ENST00000520497 GJB2P29033 226 aa9.95□□□□□ -0.82
VAPB-206ENST00000520497 JAG1P78504 1218 aa9.95□□□□□ -0.82
VAPB-206ENST00000520497 PPP2R5BQ15173 497 aa9.95□□□□□ -0.82
VAPB-206ENST00000520497 SHROOM1Q2M3G4 852 aaPredicted RBP9.95□□□□□ -0.82
VAPB-206ENST00000520497 PPP4R3BQ5MIZ7 849 aa9.95□□□□□ -0.82
VAPB-206ENST00000520497 MAP1SQ66K74 1059 aaPredicted RBP9.95□□□□□ -0.82
VAPB-206ENST00000520497 SYNE3Q6ZMZ3 975 aa9.95□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms