RNA–Protein interactions for RNA: ENST00000513578.5

RNF4-220, Transcript of ring finger protein 4, humanhuman

TSL 4

Gene RNF4, Length 545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-220ENST00000513578 PGBD1Q96JS3 809 aa9.7□□□□□ -0.86
RNF4-220ENST00000513578 IDI2Q9BXS1 227 aa9.7□□□□□ -0.86
RNF4-220ENST00000513578 FOXP1Q9H334 677 aaPredicted RBP9.7□□□□□ -0.86
RNF4-220ENST00000513578 DBNDD1Q9H9R9 158 aa9.7□□□□□ -0.86
RNF4-220ENST00000513578 DDX19AQ9NUU7 478 aaKnown RBP9.7□□□□□ -0.86
RNF4-220ENST00000513578 SERPINA10Q9UK55 444 aa9.7□□□□□ -0.86
RNF4-220ENST00000513578 UTRNP46939 3433 aa9.7□□□□□ -0.86
RNF4-220ENST00000513578 MYH4Q9Y623 1939 aa9.7□□□□□ -0.86
RNF4-220ENST00000513578 A0A1W2PQ27 194 aa9.69□□□□□ -0.86
RNF4-220ENST00000513578 A0A1W2PQ64 194 aa9.69□□□□□ -0.86
RNF4-220ENST00000513578 A0A1W2PQD8 194 aa9.69□□□□□ -0.86
RNF4-220ENST00000513578 GOLGA6L4A6NEF3 574 aa9.69□□□□□ -0.86
RNF4-220ENST00000513578 KIF28PB7ZC32 967 aa9.69□□□□□ -0.86
RNF4-220ENST00000513578 TSPY3P0CV98 308 aa9.69□□□□□ -0.86
RNF4-220ENST00000513578 TSPY8P0CW00 308 aa9.69□□□□□ -0.86
RNF4-220ENST00000513578 XBP1P17861 261 aa9.69□□□□□ -0.86
RNF4-220ENST00000513578 MMP14P50281 582 aa9.69□□□□□ -0.86
RNF4-220ENST00000513578 SAFBQ15424 915 aaKnown RBP eCLIP9.69□□□□□ -0.86
RNF4-220ENST00000513578 PKN1Q16512 942 aa9.69□□□□□ -0.86
RNF4-220ENST00000513578 PPP4R3BQ5MIZ7 849 aa9.69□□□□□ -0.86
RNF4-220ENST00000513578 ADALQ6DHV7 355 aa9.69□□□□□ -0.86
RNF4-220ENST00000513578 OTUD7BQ6GQQ9 843 aa9.69□□□□□ -0.86
RNF4-220ENST00000513578 RBM43Q6ZSC3 357 aaKnown RBP9.69□□□□□ -0.86
RNF4-220ENST00000513578 LINC00301Q8NCQ3 95 aa9.69□□□□□ -0.86
RNF4-220ENST00000513578 KCNG4Q8TDN1 519 aa9.69□□□□□ -0.86
RNF4-220ENST00000513578 CNTNAP5Q8WYK1 1306 aa9.69□□□□□ -0.86
RNF4-220ENST00000513578 DYNLL2Q96FJ2 89 aa9.69□□□□□ -0.86
RNF4-220ENST00000513578 LZTS2Q9BRK4 669 aa9.69□□□□□ -0.86
RNF4-220ENST00000513578 GNL3Q9BVP2 549 aaKnown RBP eCLIP9.69□□□□□ -0.86
RNF4-220ENST00000513578 PDGFDQ9GZP0 370 aaPredicted RBP9.69□□□□□ -0.86
RNF4-220ENST00000513578 OSBPL5Q9H0X9 879 aaPredicted RBP9.69□□□□□ -0.86
RNF4-220ENST00000513578 DHX36Q9H2U1 1008 aaKnown RBP9.69□□□□□ -0.86
RNF4-220ENST00000513578 KAT14Q9H8E8 782 aa9.69□□□□□ -0.86
RNF4-220ENST00000513578 USP40Q9NVE5 1235 aa9.69□□□□□ -0.86
RNF4-220ENST00000513578 ARFGEF1Q9Y6D6 1849 aa9.69□□□□□ -0.86
RNF4-220ENST00000513578 IGKV6D-41A0A0C4DH26 115 aa9.68□□□□□ -0.86
RNF4-220ENST00000513578 SYCE3A1L190 88 aa9.68□□□□□ -0.86
RNF4-220ENST00000513578 NMT2O60551 498 aa9.68□□□□□ -0.86
RNF4-220ENST00000513578 PPP6R2O75170 966 aa9.68□□□□□ -0.86
RNF4-220ENST00000513578 TOP1P11387 765 aaKnown RBP9.68□□□□□ -0.86
RNF4-220ENST00000513578 DPEP1P16444 411 aa9.68□□□□□ -0.86
RNF4-220ENST00000513578 DSG3P32926 999 aa9.68□□□□□ -0.86
RNF4-220ENST00000513578 AKAP17AQ02040 695 aaKnown RBP9.68□□□□□ -0.86
RNF4-220ENST00000513578 SLC39A14Q15043 492 aa9.68□□□□□ -0.86
RNF4-220ENST00000513578 ANO1Q5XXA6 986 aa9.68□□□□□ -0.86
RNF4-220ENST00000513578 PNMA1Q8ND90 353 aa9.68□□□□□ -0.86
RNF4-220ENST00000513578 AIFM3Q96NN9 605 aa9.68□□□□□ -0.86
RNF4-220ENST00000513578 PHF20Q9BVI0 1012 aa9.68□□□□□ -0.86
RNF4-220ENST00000513578 MTFR1LQ9H019 292 aa9.68□□□□□ -0.86
RNF4-220ENST00000513578 SH3GLB2Q9NR46 395 aa9.68□□□□□ -0.86
RNF4-220ENST00000513578 EIF4ENIF1Q9NRA8 985 aaKnown RBP9.68□□□□□ -0.86
RNF4-220ENST00000513578 SAP30BPQ9UHR5 308 aaKnown RBP9.68□□□□□ -0.86
RNF4-220ENST00000513578 ATRNL1Q5VV63 1379 aa9.67□□□□□ -0.86
RNF4-220ENST00000513578 FAM237AA0A1B0GTK4 181 aa9.67□□□□□ -0.86
RNF4-220ENST00000513578 PALM3A6NDB9 673 aaPredicted RBP9.67□□□□□ -0.86
RNF4-220ENST00000513578 YDJCA8MPS7 323 aa9.67□□□□□ -0.86
RNF4-220ENST00000513578 CTAGE5O15320 804 aa9.67□□□□□ -0.86
RNF4-220ENST00000513578 PPIP5K2O43314 1243 aa9.67□□□□□ -0.86
RNF4-220ENST00000513578 C21orf2O43822 256 aa9.67□□□□□ -0.86
RNF4-220ENST00000513578 ENTPD3O75355 529 aa9.67□□□□□ -0.86
RNF4-220ENST00000513578 VIL1P09327 827 aaKnown RBP9.67□□□□□ -0.86
RNF4-220ENST00000513578 LIG1P18858 919 aa9.67□□□□□ -0.86
RNF4-220ENST00000513578 POLD1P28340 1107 aa9.67□□□□□ -0.86
RNF4-220ENST00000513578 GUCY1A2P33402 732 aa9.67□□□□□ -0.86
RNF4-220ENST00000513578 FOSBP53539 338 aa9.67□□□□□ -0.86
RNF4-220ENST00000513578 AOC3Q16853 763 aa9.67□□□□□ -0.86
RNF4-220ENST00000513578 PFKFB3Q16875 520 aaPredicted RBP9.67□□□□□ -0.86
RNF4-220ENST00000513578 RILPL1Q5EBL4 403 aa9.67□□□□□ -0.86
RNF4-220ENST00000513578 METTL16Q86W50 562 aaKnown RBP9.67□□□□□ -0.86
RNF4-220ENST00000513578 NOSTRINQ8IVI9 506 aa9.67□□□□□ -0.86
RNF4-220ENST00000513578 SRBD1Q8N5C6 995 aaKnown RBP9.67□□□□□ -0.86
RNF4-220ENST00000513578 FBXW7Q969H0 707 aa9.67□□□□□ -0.86
RNF4-220ENST00000513578 CCDC17Q96LX7 622 aa9.67□□□□□ -0.86
RNF4-220ENST00000513578 GMLQ99445 158 aa9.67□□□□□ -0.86
RNF4-220ENST00000513578 TMEM47Q9BQJ4 181 aa9.67□□□□□ -0.86
RNF4-220ENST00000513578 FUCA2Q9BTY2 467 aa9.67□□□□□ -0.86
RNF4-220ENST00000513578 MXD3Q9BW11 206 aa9.67□□□□□ -0.86
RNF4-220ENST00000513578 TSPY26PQ9H489 355 aa9.67□□□□□ -0.86
RNF4-220ENST00000513578 CLSTN2Q9H4D0 955 aa9.67□□□□□ -0.86
RNF4-220ENST00000513578 DDX4Q9NQI0 724 aaKnown RBP9.67□□□□□ -0.86
RNF4-220ENST00000513578 KCNQ5Q9NR82 932 aa9.67□□□□□ -0.86
RNF4-220ENST00000513578 GJB4Q9NTQ9 266 aa9.67□□□□□ -0.86
RNF4-220ENST00000513578 PIM2Q9P1W9 311 aa9.67□□□□□ -0.86
RNF4-220ENST00000513578 SERPINB13Q9UIV8 391 aa9.67□□□□□ -0.86
RNF4-220ENST00000513578 F8W031 263 aaPredicted RBP9.66□□□□□ -0.86
RNF4-220ENST00000513578 SPTLC2O15270 562 aa9.66□□□□□ -0.86
RNF4-220ENST00000513578 PPFIA3O75145 1194 aa9.66□□□□□ -0.86
RNF4-220ENST00000513578 PLEKHA8P1O95397 391 aa9.66□□□□□ -0.86
RNF4-220ENST00000513578 HLA-DOAP06340 250 aa9.66□□□□□ -0.86
RNF4-220ENST00000513578 SCNN1DP51172 638 aa9.66□□□□□ -0.86
RNF4-220ENST00000513578 STK38Q15208 465 aa9.66□□□□□ -0.86
RNF4-220ENST00000513578 PTPAQ15257 358 aa9.66□□□□□ -0.86
RNF4-220ENST00000513578 UVSSAQ2YD98 709 aa9.66□□□□□ -0.86
RNF4-220ENST00000513578 GALNT17Q6IS24 598 aa9.66□□□□□ -0.86
RNF4-220ENST00000513578 RSBN1LQ6PCB5 846 aaPredicted RBP9.66□□□□□ -0.86
RNF4-220ENST00000513578 FOXP4Q8IVH2 680 aaPredicted RBP9.66□□□□□ -0.86
RNF4-220ENST00000513578 DIS3L2Q8IYB7 885 aaKnown RBP9.66□□□□□ -0.86
RNF4-220ENST00000513578 JMYQ8N9B5 988 aa9.66□□□□□ -0.86
RNF4-220ENST00000513578 MTMR14Q8NCE2 650 aa9.66□□□□□ -0.86
RNF4-220ENST00000513578 SLC44A5Q8NCS7 719 aa9.66□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms