RNA–Protein interactions for RNA: ENST00000513024.5

LIMCH1-218, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,129 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-218ENST00000513024 SAMM50Q9Y512 469 aa9.67□□□□□ -0.86
LIMCH1-218ENST00000513024 NEO1Q92859 1461 aa9.67□□□□□ -0.86
LIMCH1-218ENST00000513024 GADD45BO75293 160 aaPredicted RBP9.67□□□□□ -0.86
LIMCH1-218ENST00000513024 PDE4BQ07343 736 aa9.67□□□□□ -0.86
LIMCH1-218ENST00000513024 PAK2Q13177 524 aa9.67□□□□□ -0.86
LIMCH1-218ENST00000513024 LRRC27Q9C0I9 530 aa9.67□□□□□ -0.86
LIMCH1-218ENST00000513024 LAMC1P11047 1609 aa9.67□□□□□ -0.86
LIMCH1-218ENST00000513024 PREX2Q70Z35 1606 aa9.67□□□□□ -0.86
LIMCH1-218ENST00000513024 DYTNA2CJ06 578 aa9.67□□□□□ -0.86
LIMCH1-218ENST00000513024 RXRAP19793 462 aa9.67□□□□□ -0.86
LIMCH1-218ENST00000513024 ZNF75DP51815 510 aa9.67□□□□□ -0.86
LIMCH1-218ENST00000513024 IGSF22Q8N9C0 903 aa9.67□□□□□ -0.86
LIMCH1-218ENST00000513024 CFAP61Q8NHU2 1237 aa9.67□□□□□ -0.86
LIMCH1-218ENST00000513024 FAM71BQ8TC56 605 aa9.67□□□□□ -0.86
LIMCH1-218ENST00000513024 DTNBP1Q96EV8 351 aa9.67□□□□□ -0.86
LIMCH1-218ENST00000513024 ANTXR1Q9H6X2 564 aa9.67□□□□□ -0.86
LIMCH1-218ENST00000513024 GPHNQ9NQX3 736 aaPredicted RBP9.67□□□□□ -0.86
LIMCH1-218ENST00000513024 GUCY2CP25092 1073 aa9.67□□□□□ -0.86
LIMCH1-218ENST00000513024 RMDN2Q96LZ7 410 aa9.67□□□□□ -0.86
LIMCH1-218ENST00000513024 PLIN2Q99541 437 aa9.67□□□□□ -0.86
LIMCH1-218ENST00000513024 CENPKQ9BS16 269 aa9.67□□□□□ -0.86
LIMCH1-218ENST00000513024 PICK1Q9NRD5 415 aa9.67□□□□□ -0.86
LIMCH1-218ENST00000513024 FRMD4BQ9Y2L6 1034 aa9.67□□□□□ -0.86
LIMCH1-218ENST00000513024 UNC13BO14795 1591 aa9.66□□□□□ -0.86
LIMCH1-218ENST00000513024 MAST1Q9Y2H9 1570 aa9.66□□□□□ -0.86
LIMCH1-218ENST00000513024 PLCG2P16885 1265 aa9.66□□□□□ -0.86
LIMCH1-218ENST00000513024 MTMR3Q13615 1198 aa9.66□□□□□ -0.86
LIMCH1-218ENST00000513024 GJC2Q5T442 439 aaPredicted RBP9.66□□□□□ -0.86
LIMCH1-218ENST00000513024 HHATQ5VTY9 493 aa9.66□□□□□ -0.86
LIMCH1-218ENST00000513024 CEP85Q6P2H3 762 aa9.66□□□□□ -0.86
LIMCH1-218ENST00000513024 GDAP1L1Q96MZ0 367 aa9.66□□□□□ -0.86
LIMCH1-218ENST00000513024 BTG4Q9NY30 223 aa9.66□□□□□ -0.86
LIMCH1-218ENST00000513024 TMOD4Q9NZQ9 345 aa9.66□□□□□ -0.86
LIMCH1-218ENST00000513024 BCS1LQ9Y276 419 aa9.66□□□□□ -0.86
LIMCH1-218ENST00000513024 HNRNPH2P55795 449 aaKnown RBP9.66□□□□□ -0.86
LIMCH1-218ENST00000513024 TSPYL6Q8N831 410 aa9.66□□□□□ -0.86
LIMCH1-218ENST00000513024 CEP70Q8NHQ1 597 aa9.66□□□□□ -0.86
LIMCH1-218ENST00000513024 VPS16Q9H269 839 aa9.66□□□□□ -0.86
LIMCH1-218ENST00000513024 MRPL46Q9H2W6 279 aaKnown RBP9.66□□□□□ -0.86
LIMCH1-218ENST00000513024 ZNF711Q9Y462 761 aa9.66□□□□□ -0.86
LIMCH1-218ENST00000513024 GOLGA8KD6RF30 607 aa9.66□□□□□ -0.86
LIMCH1-218ENST00000513024 ARHGEF9O43307 516 aa9.66□□□□□ -0.86
LIMCH1-218ENST00000513024 ATP8B1O43520 1251 aa9.66□□□□□ -0.86
LIMCH1-218ENST00000513024 PABPC4Q13310 644 aaKnown RBP eCLIP9.66□□□□□ -0.86
LIMCH1-218ENST00000513024 IFIT1BQ5T764 474 aaKnown RBP9.66□□□□□ -0.86
LIMCH1-218ENST00000513024 TMEM63CQ9P1W3 806 aa9.66□□□□□ -0.86
LIMCH1-218ENST00000513024 TTF2Q9UNY4 1162 aaKnown RBP9.66□□□□□ -0.86
LIMCH1-218ENST00000513024 IQGAP3Q86VI3 1631 aa9.66□□□□□ -0.86
LIMCH1-218ENST00000513024 LARGE2Q8N3Y3 721 aa9.66□□□□□ -0.86
LIMCH1-218ENST00000513024 HELBQ8NG08 1087 aaPredicted RBP9.66□□□□□ -0.86
LIMCH1-218ENST00000513024 ANKRD2Q9GZV1 360 aa9.66□□□□□ -0.86
LIMCH1-218ENST00000513024 WDR70Q9NW82 654 aa9.66□□□□□ -0.86
LIMCH1-218ENST00000513024 CHPF2Q9P2E5 772 aa9.66□□□□□ -0.86
LIMCH1-218ENST00000513024 IQSEC3Q9UPP2 1182 aaPredicted RBP9.66□□□□□ -0.86
LIMCH1-218ENST00000513024 SYNMO15061 1565 aa9.65□□□□□ -0.86
LIMCH1-218ENST00000513024 SNRPA1P09661 255 aaKnown RBP9.65□□□□□ -0.86
LIMCH1-218ENST00000513024 EEF2P13639 858 aaKnown RBP9.65□□□□□ -0.86
LIMCH1-218ENST00000513024 KRT71Q3SY84 523 aa9.65□□□□□ -0.86
LIMCH1-218ENST00000513024 HEATR3Q7Z4Q2 680 aa9.65□□□□□ -0.86
LIMCH1-218ENST00000513024 OTUD7AQ8TE49 926 aaPredicted RBP9.65□□□□□ -0.86
LIMCH1-218ENST00000513024 TCP11Q8WWU5 503 aa9.65□□□□□ -0.86
LIMCH1-218ENST00000513024 PLCB1Q9NQ66 1216 aa9.65□□□□□ -0.86
LIMCH1-218ENST00000513024 LMBRD1Q9NUN5 540 aa9.65□□□□□ -0.86
LIMCH1-218ENST00000513024 ARHGAP42A6NI28 874 aa9.65□□□□□ -0.86
LIMCH1-218ENST00000513024 EVI5O60447 810 aa9.65□□□□□ -0.86
LIMCH1-218ENST00000513024 TROVE2P10155 538 aaKnown RBP eCLIP9.65□□□□□ -0.86
LIMCH1-218ENST00000513024 ALDH1B1P30837 517 aa9.65□□□□□ -0.86
LIMCH1-218ENST00000513024 FANCCQ00597 558 aa9.65□□□□□ -0.86
LIMCH1-218ENST00000513024 TRIM60Q495X7 471 aa9.65□□□□□ -0.86
LIMCH1-218ENST00000513024 ESR2Q92731 530 aa9.65□□□□□ -0.86
LIMCH1-218ENST00000513024 RPGRIP1Q96KN7 1286 aa9.65□□□□□ -0.86
LIMCH1-218ENST00000513024 CALR3Q96L12 384 aaKnown RBP9.65□□□□□ -0.86
LIMCH1-218ENST00000513024 KRT23Q9C075 422 aa9.65□□□□□ -0.86
LIMCH1-218ENST00000513024 C14orf93Q9H972 538 aaKnown RBP9.65□□□□□ -0.86
LIMCH1-218ENST00000513024 CDC42BPBQ9Y5S2 1711 aa9.65□□□□□ -0.86
LIMCH1-218ENST00000513024 ELP1O95163 1332 aa9.65□□□□□ -0.86
LIMCH1-218ENST00000513024 LONRF3Q496Y0 759 aa9.65□□□□□ -0.86
LIMCH1-218ENST00000513024 SLC9C2Q5TAH2 1124 aa9.65□□□□□ -0.86
LIMCH1-218ENST00000513024 NBPF10Q6P3W6 841 aaKnown RBP9.65□□□□□ -0.86
LIMCH1-218ENST00000513024 TMTC2Q8N394 836 aa9.65□□□□□ -0.86
LIMCH1-218ENST00000513024 ZNF280CQ8ND82 737 aa9.65□□□□□ -0.86
LIMCH1-218ENST00000513024 NBPF3Q9H094 633 aa9.65□□□□□ -0.86
LIMCH1-218ENST00000513024 CXorf56Q9H5V9 222 aa9.65□□□□□ -0.86
LIMCH1-218ENST00000513024 GNPATO15228 680 aa9.65□□□□□ -0.87
LIMCH1-218ENST00000513024 NEK2P51955 445 aa9.65□□□□□ -0.87
LIMCH1-218ENST00000513024 RAP1GDS1P52306 607 aa9.65□□□□□ -0.87
LIMCH1-218ENST00000513024 KRT24Q2M2I5 525 aa9.65□□□□□ -0.87
LIMCH1-218ENST00000513024 ANKRD13DQ6ZTN6 518 aa9.65□□□□□ -0.87
LIMCH1-218ENST00000513024 DHX32Q7L7V1 743 aaKnown RBP9.65□□□□□ -0.87
LIMCH1-218ENST00000513024 CNBD1Q8NA66 436 aa9.65□□□□□ -0.87
LIMCH1-218ENST00000513024 PSMB7Q99436 277 aa9.65□□□□□ -0.87
LIMCH1-218ENST00000513024 DRC3Q9H069 523 aa9.65□□□□□ -0.87
LIMCH1-218ENST00000513024 CTTNBP2NLQ9P2B4 639 aa9.65□□□□□ -0.87
LIMCH1-218ENST00000513024 MAST3O60307 1309 aa9.65□□□□□ -0.87
LIMCH1-218ENST00000513024 ERVK-7P63135 1459 aa9.64□□□□□ -0.87
LIMCH1-218ENST00000513024 PTPRTO14522 1441 aa9.64□□□□□ -0.87
LIMCH1-218ENST00000513024 CCDC159P0C7I6 412 aa9.64□□□□□ -0.87
LIMCH1-218ENST00000513024 LMNB2Q03252 620 aa9.64□□□□□ -0.87
LIMCH1-218ENST00000513024 ATP6V0A2Q9Y487 856 aa9.64□□□□□ -0.87
LIMCH1-218ENST00000513024 TTC37Q6PGP7 1564 aa9.64□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms