RNA–Protein interactions for RNA: ENST00000512820.5

LIMCH1-216, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,071 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-216ENST00000512820 LONRF2Q1L5Z9 754 aa9.44□□□□□ -0.9
LIMCH1-216ENST00000512820 KRT79Q5XKE5 535 aa9.44□□□□□ -0.9
LIMCH1-216ENST00000512820 SLF2Q8IX21 1173 aa9.44□□□□□ -0.9
LIMCH1-216ENST00000512820 SDR42E1Q8WUS8 393 aa9.44□□□□□ -0.9
LIMCH1-216ENST00000512820 NUP58Q9BVL2 599 aa9.44□□□□□ -0.9
LIMCH1-216ENST00000512820 CCDC113Q9H0I3 377 aa9.44□□□□□ -0.9
LIMCH1-216ENST00000512820 MMP1P03956 469 aa9.44□□□□□ -0.9
LIMCH1-216ENST00000512820 CCZ1BP86790 482 aa9.44□□□□□ -0.9
LIMCH1-216ENST00000512820 CCZ1P86791 482 aaPredicted RBP9.44□□□□□ -0.9
LIMCH1-216ENST00000512820 IFI16Q16666 785 aaKnown RBP9.44□□□□□ -0.9
LIMCH1-216ENST00000512820 ARMCX5Q6P1M9 558 aa9.44□□□□□ -0.9
LIMCH1-216ENST00000512820 PPIL4Q8WUA2 492 aaKnown RBP eCLIP9.44□□□□□ -0.9
LIMCH1-216ENST00000512820 SECISBP2LQ93073 1101 aaKnown RBP9.44□□□□□ -0.9
LIMCH1-216ENST00000512820 RRP36Q96EU6 259 aaKnown RBP9.44□□□□□ -0.9
LIMCH1-216ENST00000512820 GDAP1L1Q96MZ0 367 aa9.44□□□□□ -0.9
LIMCH1-216ENST00000512820 PARD6BQ9BYG5 372 aa9.44□□□□□ -0.9
LIMCH1-216ENST00000512820 PDE11AQ9HCR9 933 aa9.44□□□□□ -0.9
LIMCH1-216ENST00000512820 SAR1BQ9Y6B6 198 aa9.44□□□□□ -0.9
LIMCH1-216ENST00000512820 PTPRUQ92729 1446 aa9.44□□□□□ -0.9
LIMCH1-216ENST00000512820 ZEB2O60315 1214 aa9.44□□□□□ -0.9
LIMCH1-216ENST00000512820 COBLO75128 1261 aa9.44□□□□□ -0.9
LIMCH1-216ENST00000512820 GTF2A1P52655 376 aaPredicted RBP9.44□□□□□ -0.9
LIMCH1-216ENST00000512820 PARP10Q53GL7 1025 aa9.44□□□□□ -0.9
LIMCH1-216ENST00000512820 DHX37Q8IY37 1157 aaKnown RBP9.44□□□□□ -0.9
LIMCH1-216ENST00000512820 ATRIPQ8WXE1 791 aa9.44□□□□□ -0.9
LIMCH1-216ENST00000512820 ZSCAN10Q96SZ4 725 aaPredicted RBP9.44□□□□□ -0.9
LIMCH1-216ENST00000512820 FRMPD1Q5SYB0 1578 aa9.43□□□□□ -0.9
LIMCH1-216ENST00000512820 GOLGA6L7A0A1B0GV03 622 aa9.43□□□□□ -0.9
LIMCH1-216ENST00000512820 TMEM232C9JQI7 657 aa9.43□□□□□ -0.9
LIMCH1-216ENST00000512820 IFNAR1P17181 557 aa9.43□□□□□ -0.9
LIMCH1-216ENST00000512820 BCAMP50895 628 aa9.43□□□□□ -0.9
LIMCH1-216ENST00000512820 RESP18Q5W5W9 173 aa9.43□□□□□ -0.9
LIMCH1-216ENST00000512820 SV2BQ7L1I2 683 aa9.43□□□□□ -0.9
LIMCH1-216ENST00000512820 SMYD4Q8IYR2 804 aaPredicted RBP9.43□□□□□ -0.9
LIMCH1-216ENST00000512820 SLC35F6Q8N357 371 aa9.43□□□□□ -0.9
LIMCH1-216ENST00000512820 CRACR2BQ8N4Y2 399 aaPredicted RBP9.43□□□□□ -0.9
LIMCH1-216ENST00000512820 ZSWIM5Q9P217 1185 aa9.43□□□□□ -0.9
LIMCH1-216ENST00000512820 SOWAHDA6NJG2 315 aa9.43□□□□□ -0.9
LIMCH1-216ENST00000512820 PPP1R2P41236 205 aa9.43□□□□□ -0.9
LIMCH1-216ENST00000512820 MB21D2Q8IYB1 491 aaPredicted RBP9.43□□□□□ -0.9
LIMCH1-216ENST00000512820 GSDMAQ96QA5 445 aa9.43□□□□□ -0.9
LIMCH1-216ENST00000512820 ZNF609O15014 1411 aa9.43□□□□□ -0.9
LIMCH1-216ENST00000512820 ARHGEF28Q8N1W1 1705 aaKnown RBP9.43□□□□□ -0.9
LIMCH1-216ENST00000512820 GOLGA6CA6NDK9 693 aa9.43□□□□□ -0.9
LIMCH1-216ENST00000512820 GOLGA6DP0CG33 693 aa9.43□□□□□ -0.9
LIMCH1-216ENST00000512820 PTGDRQ13258 359 aa9.43□□□□□ -0.9
LIMCH1-216ENST00000512820 FAM47AQ5JRC9 791 aa9.43□□□□□ -0.9
LIMCH1-216ENST00000512820 NBPF14Q5TI25 921 aa9.43□□□□□ -0.9
LIMCH1-216ENST00000512820 GOLGA6AQ9NYA3 693 aa9.43□□□□□ -0.9
LIMCH1-216ENST00000512820 ZSCAN20P17040 1043 aaPredicted RBP9.43□□□□□ -0.9
LIMCH1-216ENST00000512820 CFAP58Q5T655 872 aa9.43□□□□□ -0.9
LIMCH1-216ENST00000512820 AATFQ9NY61 560 aaKnown RBP eCLIP9.43□□□□□ -0.9
LIMCH1-216ENST00000512820 PCDHB6Q9Y5E3 794 aa9.43□□□□□ -0.9
LIMCH1-216ENST00000512820 CYP27B1O15528 508 aa9.42□□□□□ -0.9
LIMCH1-216ENST00000512820 CNNM4Q6P4Q7 775 aa9.42□□□□□ -0.9
LIMCH1-216ENST00000512820 GIMAP7Q8NHV1 300 aa9.42□□□□□ -0.9
LIMCH1-216ENST00000512820 DYDC1Q8WWB3 177 aa9.42□□□□□ -0.9
LIMCH1-216ENST00000512820 PIH1D3Q9NQM4 214 aaKnown RBP9.42□□□□□ -0.9
LIMCH1-216ENST00000512820 EPN1Q9Y6I3 576 aaPredicted RBP9.42□□□□□ -0.9
LIMCH1-216ENST00000512820 HEG1Q9ULI3 1381 aa9.42□□□□□ -0.9
LIMCH1-216ENST00000512820 GOLGA6BA6NDN3 693 aa9.42□□□□□ -0.9
LIMCH1-216ENST00000512820 USP17L12C9JPN9 530 aa9.42□□□□□ -0.9
LIMCH1-216ENST00000512820 USP17L21D6R901 530 aa9.42□□□□□ -0.9
LIMCH1-216ENST00000512820 GTPBP6O43824 516 aaPredicted RBP9.42□□□□□ -0.9
LIMCH1-216ENST00000512820 TNNI2P48788 182 aa9.42□□□□□ -0.9
LIMCH1-216ENST00000512820 COPB1P53618 953 aaKnown RBP9.42□□□□□ -0.9
LIMCH1-216ENST00000512820 E4F1Q66K89 784 aaPredicted RBP9.42□□□□□ -0.9
LIMCH1-216ENST00000512820 GPIHBP1Q8IV16 184 aa9.42□□□□□ -0.9
LIMCH1-216ENST00000512820 RPGRQ92834 1020 aaKnown RBP9.42□□□□□ -0.9
LIMCH1-216ENST00000512820 SETDB2Q96T68 719 aa9.42□□□□□ -0.9
LIMCH1-216ENST00000512820 PSMB7Q99436 277 aa9.42□□□□□ -0.9
LIMCH1-216ENST00000512820 SELENOOQ9BVL4 669 aa9.42□□□□□ -0.9
LIMCH1-216ENST00000512820 MAP3K15Q6ZN16 1313 aa9.42□□□□□ -0.9
LIMCH1-216ENST00000512820 AK9Q5TCS8 1911 aa9.42□□□□□ -0.9
LIMCH1-216ENST00000512820 CCDC151A5D8V7 595 aa9.42□□□□□ -0.9
LIMCH1-216ENST00000512820 KIF28PB7ZC32 967 aa9.42□□□□□ -0.9
LIMCH1-216ENST00000512820 PRKAB2O43741 272 aa9.42□□□□□ -0.9
LIMCH1-216ENST00000512820 SLFN14P0C7P3 912 aa9.42□□□□□ -0.9
LIMCH1-216ENST00000512820 LIFRP42702 1097 aa9.42□□□□□ -0.9
LIMCH1-216ENST00000512820 RABL6Q3YEC7 729 aaPredicted RBP9.42□□□□□ -0.9
LIMCH1-216ENST00000512820 GIGYF2Q6Y7W6 1299 aaKnown RBP9.42□□□□□ -0.9
LIMCH1-216ENST00000512820 HAUS4Q9H6D7 363 aa9.42□□□□□ -0.9
LIMCH1-216ENST00000512820 H7C1D1 291 aa9.42□□□□□ -0.9
LIMCH1-216ENST00000512820 CCNT1O60563 726 aaKnown RBP9.42□□□□□ -0.9
LIMCH1-216ENST00000512820 TBC1D10CQ8IV04 446 aa9.42□□□□□ -0.9
LIMCH1-216ENST00000512820 SRPRBQ9Y5M8 271 aaKnown RBP9.42□□□□□ -0.9
LIMCH1-216ENST00000512820 MROH1Q8NDA8 1641 aa9.41□□□□□ -0.9
LIMCH1-216ENST00000512820 C6orf229H3BNL8 230 aa9.41□□□□□ -0.9
LIMCH1-216ENST00000512820 LDHBP07195 334 aaKnown RBP9.41□□□□□ -0.9
LIMCH1-216ENST00000512820 MCAMP43121 646 aa9.41□□□□□ -0.9
LIMCH1-216ENST00000512820 C8orf74Q6P047 294 aa9.41□□□□□ -0.9
LIMCH1-216ENST00000512820 TOGARAM2Q6ZUX3 1019 aa9.41□□□□□ -0.9
LIMCH1-216ENST00000512820 SND1Q7KZF4 910 aaKnown RBP eCLIP9.41□□□□□ -0.9
LIMCH1-216ENST00000512820 OTUD6BQ8N6M0 293 aa9.41□□□□□ -0.9
LIMCH1-216ENST00000512820 RPGRIP1Q96KN7 1286 aa9.41□□□□□ -0.9
LIMCH1-216ENST00000512820 RNF26Q9BY78 433 aaPredicted RBP9.41□□□□□ -0.9
LIMCH1-216ENST00000512820 BTG4Q9NY30 223 aa9.41□□□□□ -0.9
LIMCH1-216ENST00000512820 MKRN1Q9UHC7 482 aaKnown RBP9.41□□□□□ -0.9
LIMCH1-216ENST00000512820 CEMIPQ8WUJ3 1361 aa9.41□□□□□ -0.9
LIMCH1-216ENST00000512820 TRAF5O00463 557 aa9.41□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms