RNA–Protein interactions for RNA: ENST00000510852.1

USP53-207, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 2

Gene USP53, Length 2,437 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-207ENST00000510852 IL4RP24394 825 aa11.19□□□□□ -0.62
USP53-207ENST00000510852 PGBD4Q96DM1 585 aa11.19□□□□□ -0.62
USP53-207ENST00000510852 NUCKS1Q9H1E3 243 aaKnown RBP11.19□□□□□ -0.62
USP53-207ENST00000510852 NGRNQ9NPE2 291 aaKnown RBP11.19□□□□□ -0.62
USP53-207ENST00000510852 RNF19AQ9NV58 838 aa11.19□□□□□ -0.62
USP53-207ENST00000510852 TBK1Q9UHD2 729 aa11.19□□□□□ -0.62
USP53-207ENST00000510852 NIP7Q9Y221 180 aaKnown RBP eCLIP11.19□□□□□ -0.62
USP53-207ENST00000510852 DAAM1Q9Y4D1 1078 aa11.19□□□□□ -0.62
USP53-207ENST00000510852 PSMA3P25788 255 aa11.18□□□□□ -0.62
USP53-207ENST00000510852 CASP7P55210 303 aa11.18□□□□□ -0.62
USP53-207ENST00000510852 SLC15A2Q16348 729 aa11.18□□□□□ -0.62
USP53-207ENST00000510852 ALFQ53S48 1182 aa11.18□□□□□ -0.62
USP53-207ENST00000510852 KIAA1614Q5VZ46 1190 aa11.18□□□□□ -0.62
USP53-207ENST00000510852 ZNF449Q6P9G9 518 aa11.18□□□□□ -0.62
USP53-207ENST00000510852 UBE3BQ7Z3V4 1068 aa11.18□□□□□ -0.62
USP53-207ENST00000510852 ZNF713Q8N859 430 aaPredicted RBP11.18□□□□□ -0.62
USP53-207ENST00000510852 SH3KBP1Q96B97 665 aa11.18□□□□□ -0.62
USP53-207ENST00000510852 TRMT1Q9NXH9 659 aaKnown RBP11.18□□□□□ -0.62
USP53-207ENST00000510852 STK32BQ9NY57 414 aa11.18□□□□□ -0.62
USP53-207ENST00000510852 SCGB1D2O95969 90 aa11.18□□□□□ -0.62
USP53-207ENST00000510852 TPM3P06753 285 aa11.18□□□□□ -0.62
USP53-207ENST00000510852 ENPP1P22413 925 aa11.18□□□□□ -0.62
USP53-207ENST00000510852 SSTR3P32745 418 aaPredicted RBP11.18□□□□□ -0.62
USP53-207ENST00000510852 CCDC158Q5M9N0 1113 aa11.18□□□□□ -0.62
USP53-207ENST00000510852 TBC1D9BQ66K14 1250 aa11.18□□□□□ -0.62
USP53-207ENST00000510852 CEP85Q6P2H3 762 aa11.18□□□□□ -0.62
USP53-207ENST00000510852 COL23A1Q86Y22 540 aaPredicted RBP11.18□□□□□ -0.62
USP53-207ENST00000510852 BRSK2Q8IWQ3 736 aa11.18□□□□□ -0.62
USP53-207ENST00000510852 SIRT2Q8IXJ6 389 aa11.18□□□□□ -0.62
USP53-207ENST00000510852 SUCLG2Q96I99 432 aa11.18□□□□□ -0.62
USP53-207ENST00000510852 TRIM6Q9C030 488 aaPredicted RBP11.18□□□□□ -0.62
USP53-207ENST00000510852 XPO7Q9UIA9 1087 aaKnown RBP11.18□□□□□ -0.62
USP53-207ENST00000510852 BCORQ6W2J9 1755 aa11.18□□□□□ -0.62
USP53-207ENST00000510852 NUP98P52948 1817 aa11.17□□□□□ -0.62
USP53-207ENST00000510852 BAIAP3O94812 1187 aa11.17□□□□□ -0.62
USP53-207ENST00000510852 GLULP15104 373 aa11.17□□□□□ -0.62
USP53-207ENST00000510852 PARP10Q53GL7 1025 aa11.17□□□□□ -0.62
USP53-207ENST00000510852 SUSD4Q5VX71 490 aa11.17□□□□□ -0.62
USP53-207ENST00000510852 BICDL1Q6ZP65 573 aa11.17□□□□□ -0.62
USP53-207ENST00000510852 TBC1D9Q6ZT07 1266 aa11.17□□□□□ -0.62
USP53-207ENST00000510852 C11orf74Q86VG3 221 aa11.17□□□□□ -0.62
USP53-207ENST00000510852 RPAP2Q8IXW5 612 aaPredicted RBP11.17□□□□□ -0.62
USP53-207ENST00000510852 ELOA2Q8IYF1 753 aaPredicted RBP11.17□□□□□ -0.62
USP53-207ENST00000510852 STAG2Q8N3U4 1231 aa11.17□□□□□ -0.62
USP53-207ENST00000510852 ANKRD44Q8N8A2 993 aa11.17□□□□□ -0.62
USP53-207ENST00000510852 PPHLN1Q8NEY8 458 aaKnown RBP11.17□□□□□ -0.62
USP53-207ENST00000510852 FLAD1Q8NFF5 587 aa11.17□□□□□ -0.62
USP53-207ENST00000510852 KAZALD1Q96I82 304 aa11.17□□□□□ -0.62
USP53-207ENST00000510852 ABCG4Q9H172 646 aa11.17□□□□□ -0.62
USP53-207ENST00000510852 HOXC10Q9NYD6 342 aa11.17□□□□□ -0.62
USP53-207ENST00000510852 PNPLA7Q6ZV29 1317 aa11.17□□□□□ -0.62
USP53-207ENST00000510852 SCN7AQ01118 1682 aa11.17□□□□□ -0.62
USP53-207ENST00000510852 PIP5K1CO60331 668 aa11.17□□□□□ -0.62
USP53-207ENST00000510852 PCCAP05165 728 aaPredicted RBP11.17□□□□□ -0.62
USP53-207ENST00000510852 GYS1P13807 737 aa11.17□□□□□ -0.62
USP53-207ENST00000510852 RPL17P18621 184 aaKnown RBP11.17□□□□□ -0.62
USP53-207ENST00000510852 NUCB1Q02818 461 aa11.17□□□□□ -0.62
USP53-207ENST00000510852 DMTNQ08495 405 aa11.17□□□□□ -0.62
USP53-207ENST00000510852 ZBTB38Q8NAP3 1195 aaPredicted RBP11.17□□□□□ -0.62
USP53-207ENST00000510852 FAM89AQ96GI7 184 aa11.17□□□□□ -0.62
USP53-207ENST00000510852 ZNF700Q9H0M5 742 aa11.17□□□□□ -0.62
USP53-207ENST00000510852 FANCLQ9NW38 375 aa11.17□□□□□ -0.62
USP53-207ENST00000510852 TRMT112Q9UI30 125 aaKnown RBP11.17□□□□□ -0.62
USP53-207ENST00000510852 C4AP0C0L4 1744 aa11.16□□□□□ -0.62
USP53-207ENST00000510852 AFDNP55196 1824 aaKnown RBP11.16□□□□□ -0.62
USP53-207ENST00000510852 FAM177BA6PVY3 158 aa11.16□□□□□ -0.62
USP53-207ENST00000510852 GPR37L1O60883 481 aa11.16□□□□□ -0.62
USP53-207ENST00000510852 NCAM1P13591 858 aa11.16□□□□□ -0.62
USP53-207ENST00000510852 XBP1P17861 261 aa11.16□□□□□ -0.62
USP53-207ENST00000510852 CFAP161Q6P656 301 aa11.16□□□□□ -0.62
USP53-207ENST00000510852 SPICE1Q8N0Z3 855 aa11.16□□□□□ -0.62
USP53-207ENST00000510852 GIMAP1Q8WWP7 306 aa11.16□□□□□ -0.62
USP53-207ENST00000510852 UTP14AQ9BVJ6 771 aaKnown RBP11.16□□□□□ -0.62
USP53-207ENST00000510852 RWDD1Q9H446 243 aaPredicted RBP11.16□□□□□ -0.62
USP53-207ENST00000510852 SH3GLB2Q9NR46 395 aa11.16□□□□□ -0.62
USP53-207ENST00000510852 ZNF232Q9UNY5 417 aa11.16□□□□□ -0.62
USP53-207ENST00000510852 LZTS3O60299 673 aaPredicted RBP11.16□□□□□ -0.62
USP53-207ENST00000510852 EPB42P16452 691 aa11.16□□□□□ -0.62
USP53-207ENST00000510852 RBM5P52756 815 aaKnown RBP eCLIP11.16□□□□□ -0.62
USP53-207ENST00000510852 SNX16P57768 344 aa11.16□□□□□ -0.62
USP53-207ENST00000510852 SERINC3Q13530 473 aa11.16□□□□□ -0.62
USP53-207ENST00000510852 HYIQ5T013 277 aa11.16□□□□□ -0.62
USP53-207ENST00000510852 SYNE4Q8N205 404 aa11.16□□□□□ -0.62
USP53-207ENST00000510852 SETDB2Q96T68 719 aa11.16□□□□□ -0.62
USP53-207ENST00000510852 LZTS2Q9BRK4 669 aa11.16□□□□□ -0.62
USP53-207ENST00000510852 BICC1Q9H694 974 aaKnown RBP11.16□□□□□ -0.62
USP53-207ENST00000510852 ITM2BQ9Y287 266 aa11.16□□□□□ -0.62
USP53-207ENST00000510852 INPP5FQ9Y2H2 1132 aa11.16□□□□□ -0.62
USP53-207ENST00000510852 ANKRD36CQ5JPF3 1778 aa11.15□□□□□ -0.62
USP53-207ENST00000510852 FGRP09769 529 aa11.15□□□□□ -0.62
USP53-207ENST00000510852 BPIFB3P59826 476 aa11.15□□□□□ -0.62
USP53-207ENST00000510852 ATP8B2P98198 1209 aa11.15□□□□□ -0.62
USP53-207ENST00000510852 ELOAQ14241 798 aaKnown RBP11.15□□□□□ -0.62
USP53-207ENST00000510852 RASA3Q14644 834 aa11.15□□□□□ -0.62
USP53-207ENST00000510852 TTF1Q15361 905 aaPredicted RBP11.15□□□□□ -0.62
USP53-207ENST00000510852 EPHA10Q5JZY3 1008 aa11.15□□□□□ -0.62
USP53-207ENST00000510852 AGAP9Q5VTM2 703 aa11.15□□□□□ -0.62
USP53-207ENST00000510852 ILDR2Q71H61 639 aa11.15□□□□□ -0.62
USP53-207ENST00000510852 PPP1R42Q7Z4L9 355 aa11.15□□□□□ -0.62
USP53-207ENST00000510852 PRR7Q8TB68 274 aa11.15□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms