RNA–Protein interactions for RNA: ENST00000510187.5

SQSTM1-213, Transcript of sequestosome 1, humanhuman

TSL 5 BASIC

Gene SQSTM1, Length 1,714 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-213ENST00000510187 ANTXR2P58335 489 aa18.53■□□□□ 0.56
SQSTM1-213ENST00000510187 MAPKAPK5Q8IW41 473 aa18.53■□□□□ 0.56
SQSTM1-213ENST00000510187 FMR1NBQ8N0W7 255 aaPredicted RBP18.53■□□□□ 0.56
SQSTM1-213ENST00000510187 FBXO18Q8NFZ0 1043 aa18.53■□□□□ 0.56
SQSTM1-213ENST00000510187 MINDY4BA8MYZ0 360 aa18.52■□□□□ 0.56
SQSTM1-213ENST00000510187 USP17L12C9JPN9 530 aa18.52■□□□□ 0.56
SQSTM1-213ENST00000510187 USP17L21D6R901 530 aa18.52■□□□□ 0.56
SQSTM1-213ENST00000510187 DLGAP5Q15398 846 aa18.52■□□□□ 0.56
SQSTM1-213ENST00000510187 CTR9Q6PD62 1173 aa18.52■□□□□ 0.56
SQSTM1-213ENST00000510187 CEP57L1Q8IYX8 460 aa18.52■□□□□ 0.56
SQSTM1-213ENST00000510187 LINC00301Q8NCQ3 95 aa18.52■□□□□ 0.56
SQSTM1-213ENST00000510187 NAT10Q9H0A0 1025 aaKnown RBP18.52■□□□□ 0.56
SQSTM1-213ENST00000510187 MCM9Q9NXL9 1143 aa18.52■□□□□ 0.56
SQSTM1-213ENST00000510187 ORC3Q9UBD5 711 aaPredicted RBP18.52■□□□□ 0.56
SQSTM1-213ENST00000510187 CLIP2Q9UDT6 1046 aa18.52■□□□□ 0.56
SQSTM1-213ENST00000510187 MKRN1Q9UHC7 482 aaKnown RBP18.52■□□□□ 0.56
SQSTM1-213ENST00000510187 DICER1Q9UPY3 1922 aaKnown RBP18.52■□□□□ 0.56
SQSTM1-213ENST00000510187 PPARAQ07869 468 aa18.52■□□□□ 0.55
SQSTM1-213ENST00000510187 TRDNQ13061 729 aa18.52■□□□□ 0.55
SQSTM1-213ENST00000510187 C11orf57Q6ZUT1 292 aaPredicted RBP18.52■□□□□ 0.55
SQSTM1-213ENST00000510187 DPF2Q92785 391 aa18.52■□□□□ 0.55
SQSTM1-213ENST00000510187 PRMT6Q96LA8 375 aaPredicted RBP18.52■□□□□ 0.55
SQSTM1-213ENST00000510187 NBPF3Q9H094 633 aa18.52■□□□□ 0.55
SQSTM1-213ENST00000510187 ARPP21Q9UBL0 812 aaPredicted RBP18.52■□□□□ 0.55
SQSTM1-213ENST00000510187 PCDHA7Q9UN72 937 aa18.52■□□□□ 0.55
SQSTM1-213ENST00000510187 FLT1P17948 1338 aa18.51■□□□□ 0.55
SQSTM1-213ENST00000510187 TIAM2Q8IVF5 1701 aa18.51■□□□□ 0.55
SQSTM1-213ENST00000510187 SPDYE2BA6NHP3 402 aa18.51■□□□□ 0.55
SQSTM1-213ENST00000510187 CPLX1O14810 134 aa18.51■□□□□ 0.55
SQSTM1-213ENST00000510187 WDHD1O75717 1129 aaPredicted RBP18.51■□□□□ 0.55
SQSTM1-213ENST00000510187 CDKL5O76039 1030 aa18.51■□□□□ 0.55
SQSTM1-213ENST00000510187 SPDYE6P0CI01 402 aa18.51■□□□□ 0.55
SQSTM1-213ENST00000510187 GUCY1B3Q02153 619 aa18.51■□□□□ 0.55
SQSTM1-213ENST00000510187 PICALMQ13492 652 aa18.51■□□□□ 0.55
SQSTM1-213ENST00000510187 TBC1D10CQ8IV04 446 aa18.51■□□□□ 0.55
SQSTM1-213ENST00000510187 GPC2Q8N158 579 aa18.51■□□□□ 0.55
SQSTM1-213ENST00000510187 CYP2D7A0A087X1C5 515 aa18.5■□□□□ 0.55
SQSTM1-213ENST00000510187 SHTN1A0MZ66 631 aa18.5■□□□□ 0.55
SQSTM1-213ENST00000510187 PRKCSHP14314 528 aaPredicted RBP18.5■□□□□ 0.55
SQSTM1-213ENST00000510187 MMP14P50281 582 aa18.5■□□□□ 0.55
SQSTM1-213ENST00000510187 CTDSPL2Q05D32 466 aa18.5■□□□□ 0.55
SQSTM1-213ENST00000510187 STK38Q15208 465 aa18.5■□□□□ 0.55
SQSTM1-213ENST00000510187 MYSM1Q5VVJ2 828 aa18.5■□□□□ 0.55
SQSTM1-213ENST00000510187 MICALL2Q8IY33 904 aa18.5■□□□□ 0.55
SQSTM1-213ENST00000510187 AMOTL1Q8IY63 956 aa18.5■□□□□ 0.55
SQSTM1-213ENST00000510187 TDRD3Q9H7E2 651 aaKnown RBP18.5■□□□□ 0.55
SQSTM1-213ENST00000510187 MYOZ2Q9NPC6 264 aa18.5■□□□□ 0.55
SQSTM1-213ENST00000510187 GPHNQ9NQX3 736 aaPredicted RBP18.5■□□□□ 0.55
SQSTM1-213ENST00000510187 BECN2A8MW95 431 aa18.49■□□□□ 0.55
SQSTM1-213ENST00000510187 ZNF280AP59817 542 aaPredicted RBP18.49■□□□□ 0.55
SQSTM1-213ENST00000510187 SLC4A8Q2Y0W8 1093 aa18.49■□□□□ 0.55
SQSTM1-213ENST00000510187 SBK1Q52WX2 424 aa18.49■□□□□ 0.55
SQSTM1-213ENST00000510187 MTMR14Q8NCE2 650 aa18.49■□□□□ 0.55
SQSTM1-213ENST00000510187 BPIFA3Q9BQP9 254 aa18.49■□□□□ 0.55
SQSTM1-213ENST00000510187 SAP30BPQ9UHR5 308 aaKnown RBP18.49■□□□□ 0.55
SQSTM1-213ENST00000510187 CNOT7Q9UIV1 285 aaKnown RBP18.49■□□□□ 0.55
SQSTM1-213ENST00000510187 ANGEL1Q9UNK9 670 aaKnown RBP18.49■□□□□ 0.55
SQSTM1-213ENST00000510187 CYP2D6P10635 497 aa18.49■□□□□ 0.55
SQSTM1-213ENST00000510187 CACNB3P54284 484 aa18.49■□□□□ 0.55
SQSTM1-213ENST00000510187 NFIAQ12857 509 aa18.49■□□□□ 0.55
SQSTM1-213ENST00000510187 SF3A1Q15459 793 aaKnown RBP18.49■□□□□ 0.55
SQSTM1-213ENST00000510187 DHX40Q8IX18 779 aaKnown RBP18.49■□□□□ 0.55
SQSTM1-213ENST00000510187 STK11IPQ8N1F8 1099 aa18.49■□□□□ 0.55
SQSTM1-213ENST00000510187 TMEM87BQ96K49 555 aa18.49■□□□□ 0.55
SQSTM1-213ENST00000510187 DDX4Q9NQI0 724 aaKnown RBP18.49■□□□□ 0.55
SQSTM1-213ENST00000510187 ANAPC4Q9UJX5 808 aa18.49■□□□□ 0.55
SQSTM1-213ENST00000510187 BAZ2AQ9UIF9 1905 aaKnown RBP18.49■□□□□ 0.55
SQSTM1-213ENST00000510187 SH2B2O14492 632 aaPredicted RBP18.48■□□□□ 0.55
SQSTM1-213ENST00000510187 SPTLC2O15270 562 aa18.48■□□□□ 0.55
SQSTM1-213ENST00000510187 POLR3DP05423 398 aaPredicted RBP18.48■□□□□ 0.55
SQSTM1-213ENST00000510187 KIF23Q02241 960 aaPredicted RBP18.48■□□□□ 0.55
SQSTM1-213ENST00000510187 AKNAD1Q5T1N1 836 aa18.48■□□□□ 0.55
SQSTM1-213ENST00000510187 CPLX2Q6PUV4 134 aaKnown RBP18.48■□□□□ 0.55
SQSTM1-213ENST00000510187 MFSD6Q6ZSS7 791 aa18.48■□□□□ 0.55
SQSTM1-213ENST00000510187 SMIM22K7EJ46 135 aa18.47■□□□□ 0.55
SQSTM1-213ENST00000510187 EVX2Q03828 476 aa18.47■□□□□ 0.55
SQSTM1-213ENST00000510187 RBM26Q5T8P6 1007 aaKnown RBP18.47■□□□□ 0.55
SQSTM1-213ENST00000510187 C12orf60Q5U649 245 aa18.47■□□□□ 0.55
SQSTM1-213ENST00000510187 SYNE3Q6ZMZ3 975 aa18.47■□□□□ 0.55
SQSTM1-213ENST00000510187 STAG1Q8WVM7 1258 aa18.47■□□□□ 0.55
SQSTM1-213ENST00000510187 IDI2Q9BXS1 227 aa18.47■□□□□ 0.55
SQSTM1-213ENST00000510187 RNF41Q9H4P4 317 aaPredicted RBP18.47■□□□□ 0.55
SQSTM1-213ENST00000510187 INCENPQ9NQS7 918 aa18.47■□□□□ 0.55
SQSTM1-213ENST00000510187 TMOD2Q9NZR1 351 aa18.47■□□□□ 0.55
SQSTM1-213ENST00000510187 NRBP1Q9UHY1 535 aa18.47■□□□□ 0.55
SQSTM1-213ENST00000510187 CLIC4Q9Y696 253 aa18.47■□□□□ 0.55
SQSTM1-213ENST00000510187 CLRN2A0PK11 232 aa18.46■□□□□ 0.55
SQSTM1-213ENST00000510187 H7C1D1 291 aa18.46■□□□□ 0.55
SQSTM1-213ENST00000510187 WNT10BO00744 389 aa18.46■□□□□ 0.55
SQSTM1-213ENST00000510187 MYO1BO43795 1136 aa18.46■□□□□ 0.55
SQSTM1-213ENST00000510187 DDNO94850 711 aaPredicted RBP18.46■□□□□ 0.55
SQSTM1-213ENST00000510187 SLC3A2P08195 630 aaKnown RBP18.46■□□□□ 0.55
SQSTM1-213ENST00000510187 ANO1Q5XXA6 986 aa18.46■□□□□ 0.55
SQSTM1-213ENST00000510187 SDF4Q9BRK5 362 aa18.46■□□□□ 0.55
SQSTM1-213ENST00000510187 NAV1Q8NEY1 1877 aa18.46■□□□□ 0.55
SQSTM1-213ENST00000510187 CDK5RAP2Q96SN8 1893 aa18.46■□□□□ 0.55
SQSTM1-213ENST00000510187 NEDD4P46934 1319 aa18.46■□□□□ 0.55
SQSTM1-213ENST00000510187 CMA1P23946 247 aa18.46■□□□□ 0.55
SQSTM1-213ENST00000510187 TCP10Q12799 353 aa18.46■□□□□ 0.55
SQSTM1-213ENST00000510187 DHX8Q14562 1220 aaKnown RBP18.46■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 17 ms