RNA–Protein interactions for RNA: ENST00000497539.5

SNRNP200-208, Transcript of small nuclear ribonucleoprotein U5 subunit 200, humanhuman

TSL 1 (best)

Gene SNRNP200, Length 2,666 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNRNP200-208ENST00000497539 RBM28Q9NW13 759 aaKnown RBP13.3□□□□□ -0.28
SNRNP200-208ENST00000497539 AATFQ9NY61 560 aaKnown RBP eCLIP13.3□□□□□ -0.28
SNRNP200-208ENST00000497539 A0A087WWV3 80 aa13.3□□□□□ -0.28
SNRNP200-208ENST00000497539 MINDY4BA8MYZ0 360 aa13.3□□□□□ -0.28
SNRNP200-208ENST00000497539 KIF28PB7ZC32 967 aa13.3□□□□□ -0.28
SNRNP200-208ENST00000497539 PPEF1O14829 653 aaPredicted RBP13.3□□□□□ -0.28
SNRNP200-208ENST00000497539 NR1I2O75469 434 aa13.3□□□□□ -0.28
SNRNP200-208ENST00000497539 TNNT1P13805 278 aa13.3□□□□□ -0.28
SNRNP200-208ENST00000497539 NPR1P16066 1061 aa13.3□□□□□ -0.28
SNRNP200-208ENST00000497539 ARID5BQ14865 1188 aa13.3□□□□□ -0.28
SNRNP200-208ENST00000497539 KRT40Q6A162 431 aa13.3□□□□□ -0.28
SNRNP200-208ENST00000497539 CRACR2BQ8N4Y2 399 aaPredicted RBP13.3□□□□□ -0.28
SNRNP200-208ENST00000497539 ENAHQ8N8S7 591 aaPredicted RBP13.3□□□□□ -0.28
SNRNP200-208ENST00000497539 FANCBQ8NB91 859 aa13.3□□□□□ -0.28
SNRNP200-208ENST00000497539 ENGASEQ8NFI3 743 aa13.3□□□□□ -0.28
SNRNP200-208ENST00000497539 MAP3K14Q99558 947 aa13.3□□□□□ -0.28
SNRNP200-208ENST00000497539 RTFDC1Q9BY42 306 aaPredicted RBP13.3□□□□□ -0.28
SNRNP200-208ENST00000497539 RNF26Q9BY78 433 aaPredicted RBP13.3□□□□□ -0.28
SNRNP200-208ENST00000497539 USP17L12C9JPN9 530 aa13.29□□□□□ -0.28
SNRNP200-208ENST00000497539 USP17L21D6R901 530 aa13.29□□□□□ -0.28
SNRNP200-208ENST00000497539 CTIFO43310 598 aaKnown RBP13.29□□□□□ -0.28
SNRNP200-208ENST00000497539 DEXIO95424 95 aa13.29□□□□□ -0.28
SNRNP200-208ENST00000497539 BAG3O95817 575 aa13.29□□□□□ -0.28
SNRNP200-208ENST00000497539 TPM3P06753 285 aa13.29□□□□□ -0.28
SNRNP200-208ENST00000497539 C10orf71Q711Q0 1435 aa13.29□□□□□ -0.28
SNRNP200-208ENST00000497539 GPR75-ASB3A0A0A6YYF3 556 aa13.29□□□□□ -0.28
SNRNP200-208ENST00000497539 CCDC172P0C7W6 258 aa13.29□□□□□ -0.28
SNRNP200-208ENST00000497539 SRGNP10124 158 aa13.29□□□□□ -0.28
SNRNP200-208ENST00000497539 FOSBP53539 338 aa13.29□□□□□ -0.28
SNRNP200-208ENST00000497539 FUT2Q10981 343 aa13.29□□□□□ -0.28
SNRNP200-208ENST00000497539 CCDC144BQ3MJ40 725 aa13.29□□□□□ -0.28
SNRNP200-208ENST00000497539 CCDC178Q5BJE1 867 aa13.29□□□□□ -0.28
SNRNP200-208ENST00000497539 C12orf60Q5U649 245 aa13.29□□□□□ -0.28
SNRNP200-208ENST00000497539 ADALQ6DHV7 355 aa13.29□□□□□ -0.28
SNRNP200-208ENST00000497539 IQCA1Q86XH1 822 aa13.29□□□□□ -0.28
SNRNP200-208ENST00000497539 CCDC144CPQ8IYA2 1237 aa13.29□□□□□ -0.28
SNRNP200-208ENST00000497539 CACTINQ8WUQ7 758 aaKnown RBP13.29□□□□□ -0.28
SNRNP200-208ENST00000497539 TCP11L1Q9NUJ3 509 aa13.29□□□□□ -0.28
SNRNP200-208ENST00000497539 POLLQ9UGP5 575 aa13.29□□□□□ -0.28
SNRNP200-208ENST00000497539 FAM237AA0A1B0GTK4 181 aa13.28□□□□□ -0.28
SNRNP200-208ENST00000497539 CAVIN2O95810 425 aa13.28□□□□□ -0.28
SNRNP200-208ENST00000497539 ZNF75DP51815 510 aa13.28□□□□□ -0.28
SNRNP200-208ENST00000497539 RRP12Q5JTH9 1297 aaKnown RBP13.28□□□□□ -0.28
SNRNP200-208ENST00000497539 TRIM22Q8IYM9 498 aa13.28□□□□□ -0.28
SNRNP200-208ENST00000497539 BICD2Q8TD16 824 aa13.28□□□□□ -0.28
SNRNP200-208ENST00000497539 PPFIA3O75145 1194 aa13.28□□□□□ -0.28
SNRNP200-208ENST00000497539 PLCG2P16885 1265 aa13.28□□□□□ -0.28
SNRNP200-208ENST00000497539 PDE6BP35913 854 aa13.28□□□□□ -0.28
SNRNP200-208ENST00000497539 ZNF165P49910 485 aa13.28□□□□□ -0.28
SNRNP200-208ENST00000497539 GUCY1B3Q02153 619 aa13.28□□□□□ -0.28
SNRNP200-208ENST00000497539 FAM160A1Q05DH4 1040 aa13.28□□□□□ -0.28
SNRNP200-208ENST00000497539 PDE4BQ07343 736 aa13.28□□□□□ -0.28
SNRNP200-208ENST00000497539 RAB11FIP4Q86YS3 637 aa13.28□□□□□ -0.28
SNRNP200-208ENST00000497539 SLF2Q8IX21 1173 aa13.28□□□□□ -0.28
SNRNP200-208ENST00000497539 COA1Q9GZY4 146 aa13.28□□□□□ -0.28
SNRNP200-208ENST00000497539 NOL12Q9UGY1 213 aaKnown RBP eCLIP13.28□□□□□ -0.285e-6■□□□□ 10.3
SNRNP200-208ENST00000497539 V9GYY5 206 aaPredicted RBP13.28□□□□□ -0.28
SNRNP200-208ENST00000497539 PPP6R2O75170 966 aa13.27□□□□□ -0.28
SNRNP200-208ENST00000497539 MMP1P03956 469 aa13.27□□□□□ -0.28
SNRNP200-208ENST00000497539 SNW1Q13573 536 aaKnown RBP13.27□□□□□ -0.28
SNRNP200-208ENST00000497539 TRIM29Q14134 588 aa13.27□□□□□ -0.28
SNRNP200-208ENST00000497539 TPD52L1Q16890 204 aaPredicted RBP13.27□□□□□ -0.28
SNRNP200-208ENST00000497539 ANO1Q5XXA6 986 aa13.27□□□□□ -0.28
SNRNP200-208ENST00000497539 SLC51AQ86UW1 340 aa13.27□□□□□ -0.28
SNRNP200-208ENST00000497539 FOXP1Q9H334 677 aaPredicted RBP13.27□□□□□ -0.28
SNRNP200-208ENST00000497539 PRPF3O43395 683 aaKnown RBP13.27□□□□□ -0.29
SNRNP200-208ENST00000497539 APBA3O96018 575 aa13.27□□□□□ -0.29
SNRNP200-208ENST00000497539 ALDH1B1P30837 517 aa13.27□□□□□ -0.29
SNRNP200-208ENST00000497539 TROAPQ12815 778 aa13.27□□□□□ -0.29
SNRNP200-208ENST00000497539 SLC39A14Q15043 492 aa13.27□□□□□ -0.29
SNRNP200-208ENST00000497539 OTUD7BQ6GQQ9 843 aa13.27□□□□□ -0.29
SNRNP200-208ENST00000497539 CATIPQ7Z7H3 387 aa13.27□□□□□ -0.29
SNRNP200-208ENST00000497539 PHKBQ93100 1093 aa13.27□□□□□ -0.29
SNRNP200-208ENST00000497539 FBXW7Q969H0 707 aa13.27□□□□□ -0.29
SNRNP200-208ENST00000497539 MYL10Q9BUA6 226 aa13.27□□□□□ -0.29
SNRNP200-208ENST00000497539 GNL3Q9BVP2 549 aaKnown RBP eCLIP13.27□□□□□ -0.29
SNRNP200-208ENST00000497539 CALCOCO1Q9P1Z2 691 aa13.27□□□□□ -0.29
SNRNP200-208ENST00000497539 CLIP2Q9UDT6 1046 aa13.27□□□□□ -0.29
SNRNP200-208ENST00000497539 CYP2D7A0A087X1C5 515 aa13.26□□□□□ -0.29
SNRNP200-208ENST00000497539 RXRAP19793 462 aa13.26□□□□□ -0.29
SNRNP200-208ENST00000497539 RXRBP28702 533 aa13.26□□□□□ -0.29
SNRNP200-208ENST00000497539 IFIT1BQ5T764 474 aaKnown RBP13.26□□□□□ -0.29
SNRNP200-208ENST00000497539 CCAR1Q8IX12 1150 aaKnown RBP13.26□□□□□ -0.29
SNRNP200-208ENST00000497539 RNF217Q8TC41 542 aa13.26□□□□□ -0.29
SNRNP200-208ENST00000497539 NOL10Q9BSC4 688 aaKnown RBP13.26□□□□□ -0.29
SNRNP200-208ENST00000497539 SLC26A6Q9BXS9 759 aa13.26□□□□□ -0.29
SNRNP200-208ENST00000497539 GOLPH3LQ9H4A5 285 aa13.26□□□□□ -0.29
SNRNP200-208ENST00000497539 TOMM22Q9NS69 142 aa13.26□□□□□ -0.29
SNRNP200-208ENST00000497539 PCDHA7Q9UN72 937 aa13.26□□□□□ -0.29
SNRNP200-208ENST00000497539 USP27XA6NNY8 438 aa13.26□□□□□ -0.29
SNRNP200-208ENST00000497539 DGKHQ86XP1 1220 aa13.26□□□□□ -0.29
SNRNP200-208ENST00000497539 SH3RF3Q8TEJ3 882 aaPredicted RBP13.26□□□□□ -0.29
SNRNP200-208ENST00000497539 MRPS27Q92552 414 aaKnown RBP13.26□□□□□ -0.29
SNRNP200-208ENST00000497539 ZKSCAN3Q9BRR0 538 aa13.26□□□□□ -0.29
SNRNP200-208ENST00000497539 FTOQ9C0B1 505 aaKnown RBP eCLIP13.26□□□□□ -0.29
SNRNP200-208ENST00000497539 EIF4ENIF1Q9NRA8 985 aaKnown RBP13.26□□□□□ -0.29
SNRNP200-208ENST00000497539 CLIC4Q9Y696 253 aa13.26□□□□□ -0.29
SNRNP200-208ENST00000497539 MYH1P12882 1939 aa13.26□□□□□ -0.29
SNRNP200-208ENST00000497539 SMIM22K7EJ46 135 aa13.26□□□□□ -0.29
SNRNP200-208ENST00000497539 SPTLC2O15270 562 aa13.26□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms