RNA–Protein interactions for RNA: ENST00000489045.5

COL9A3-213, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 5

Gene COL9A3, Length 838 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-213ENST00000489045 USP14P54578 494 aa27.71■■■□□ 2.03
COL9A3-213ENST00000489045 SEPT2Q15019 361 aa27.71■■■□□ 2.03
COL9A3-213ENST00000489045 DYNLL2Q96FJ2 89 aa27.71■■■□□ 2.03
COL9A3-213ENST00000489045 TXNRD2Q9NNW7 524 aa27.71■■■□□ 2.03
COL9A3-213ENST00000489045 KBTBD3Q8NAB2 608 aa27.7■■■□□ 2.02
COL9A3-213ENST00000489045 SHISA4Q96DD7 197 aa27.7■■■□□ 2.02
COL9A3-213ENST00000489045 CRBNQ96SW2 442 aa27.7■■■□□ 2.02
COL9A3-213ENST00000489045 RNF208Q9H0X6 261 aa27.7■■■□□ 2.02
COL9A3-213ENST00000489045 SWAP70Q9UH65 585 aa27.7■■■□□ 2.02
COL9A3-213ENST00000489045 SLC4A4Q9Y6R1 1079 aa27.7■■■□□ 2.02
COL9A3-213ENST00000489045 INHAP05111 366 aa27.69■■■□□ 2.02
COL9A3-213ENST00000489045 VCAM1P19320 739 aa27.69■■■□□ 2.02
COL9A3-213ENST00000489045 GPRC5AQ8NFJ5 357 aa27.69■■■□□ 2.02
COL9A3-213ENST00000489045 RBPJLQ9UBG7 517 aa27.69■■■□□ 2.02
COL9A3-213ENST00000489045 CYP2D7A0A087X1C5 515 aa27.68■■■□□ 2.02
COL9A3-213ENST00000489045 USP17L15C9J2P7 530 aa27.68■■■□□ 2.02
COL9A3-213ENST00000489045 USP17L13C9JLJ4 530 aa27.68■■■□□ 2.02
COL9A3-213ENST00000489045 USP17L11C9JVI0 530 aa27.68■■■□□ 2.02
COL9A3-213ENST00000489045 USP17L18D6R9N7 530 aa27.68■■■□□ 2.02
COL9A3-213ENST00000489045 USP17L22D6RA61 530 aa27.68■■■□□ 2.02
COL9A3-213ENST00000489045 USP17L17D6RBQ6 530 aa27.68■■■□□ 2.02
COL9A3-213ENST00000489045 USP17L19D6RCP7 530 aa27.68■■■□□ 2.02
COL9A3-213ENST00000489045 USP17L20D6RJB6 530 aa27.68■■■□□ 2.02
COL9A3-213ENST00000489045 USP17L24Q0WX57 530 aa27.68■■■□□ 2.02
COL9A3-213ENST00000489045 AMOTL1Q8IY63 956 aa27.68■■■□□ 2.02
COL9A3-213ENST00000489045 GTF3C2Q8WUA4 911 aaPredicted RBP27.68■■■□□ 2.02
COL9A3-213ENST00000489045 DDRGK1Q96HY6 314 aa27.68■■■□□ 2.02
COL9A3-213ENST00000489045 PAGR1Q9BTK6 254 aa27.68■■■□□ 2.02
COL9A3-213ENST00000489045 UNC93B1Q9H1C4 597 aa27.68■■■□□ 2.02
COL9A3-213ENST00000489045 USP17L12C9JPN9 530 aa27.67■■■□□ 2.02
COL9A3-213ENST00000489045 USP17L21D6R901 530 aa27.67■■■□□ 2.02
COL9A3-213ENST00000489045 SMIM22K7EJ46 135 aa27.67■■■□□ 2.02
COL9A3-213ENST00000489045 GJB1P08034 283 aa27.67■■■□□ 2.02
COL9A3-213ENST00000489045 C12orf60Q5U649 245 aa27.67■■■□□ 2.02
COL9A3-213ENST00000489045 GJA8P48165 433 aa27.66■■■□□ 2.02
COL9A3-213ENST00000489045 ERVK-9P63128 1117 aa27.66■■■□□ 2.02
COL9A3-213ENST00000489045 ERVK-24P63145 666 aa27.66■■■□□ 2.02
COL9A3-213ENST00000489045 POTEEQ6S8J3 1075 aa27.66■■■□□ 2.02
COL9A3-213ENST00000489045 TMEM179Q6ZVK1 233 aa27.66■■■□□ 2.02
COL9A3-213ENST00000489045 NKX2-3Q8TAU0 364 aa27.66■■■□□ 2.02
COL9A3-213ENST00000489045 GJD2Q9UKL4 321 aa27.66■■■□□ 2.02
COL9A3-213ENST00000489045 TTC41PQ6P2S7 1318 aa27.66■■■□□ 2.02
COL9A3-213ENST00000489045 A0A1W2PRG0 241 aa27.65■■■□□ 2.02
COL9A3-213ENST00000489045 Q3C1V9 767 aa27.65■■■□□ 2.02
COL9A3-213ENST00000489045 CATSPERGQ6ZRH7 1159 aa27.65■■■□□ 2.02
COL9A3-213ENST00000489045 OTUD7AQ8TE49 926 aaPredicted RBP27.65■■■□□ 2.02
COL9A3-213ENST00000489045 AKR1B1P15121 316 aa27.64■■■□□ 2.02
COL9A3-213ENST00000489045 CDK8P49336 464 aa27.64■■■□□ 2.02
COL9A3-213ENST00000489045 CTR9Q6PD62 1173 aa27.64■■■□□ 2.02
COL9A3-213ENST00000489045 C16orf86Q6ZW13 317 aa27.64■■■□□ 2.02
COL9A3-213ENST00000489045 APPBP2Q92624 585 aa27.64■■■□□ 2.02
COL9A3-213ENST00000489045 STRBPQ96SI9 672 aaKnown RBP27.64■■■□□ 2.02
COL9A3-213ENST00000489045 RPAP3Q9H6T3 665 aaPredicted RBP27.64■■■□□ 2.02
COL9A3-213ENST00000489045 RNF113AO15541 343 aaKnown RBP27.63■■■□□ 2.01
COL9A3-213ENST00000489045 PI4K2BQ8TCG2 481 aa27.63■■■□□ 2.01
COL9A3-213ENST00000489045 U2AF1L4Q8WU68 220 aaKnown RBP27.63■■■□□ 2.01
COL9A3-213ENST00000489045 OSBP2Q969R2 916 aa27.63■■■□□ 2.01
COL9A3-213ENST00000489045 PORCNQ9H237 461 aa27.63■■■□□ 2.01
COL9A3-213ENST00000489045 RLFQ13129 1914 aa27.63■■■□□ 2.01
COL9A3-213ENST00000489045 ERC2O15083 957 aa27.62■■■□□ 2.01
COL9A3-213ENST00000489045 CNMDO75829 334 aa27.62■■■□□ 2.01
COL9A3-213ENST00000489045 MAPK4P31152 587 aa27.62■■■□□ 2.01
COL9A3-213ENST00000489045 CLEC10AQ8IUN9 316 aa27.62■■■□□ 2.01
COL9A3-213ENST00000489045 ARPP21Q9UBL0 812 aaPredicted RBP27.62■■■□□ 2.01
COL9A3-213ENST00000489045 RABGAP1Q9Y3P9 1069 aa27.62■■■□□ 2.01
COL9A3-213ENST00000489045 HMGCRP04035 888 aa27.61■■■□□ 2.01
COL9A3-213ENST00000489045 ZFYP08048 801 aaPredicted RBP27.61■■■□□ 2.01
COL9A3-213ENST00000489045 ICA1Q05084 483 aa27.61■■■□□ 2.01
COL9A3-213ENST00000489045 CCAR1Q8IX12 1150 aaKnown RBP27.61■■■□□ 2.01
COL9A3-213ENST00000489045 CCDC17Q96LX7 622 aa27.61■■■□□ 2.01
COL9A3-213ENST00000489045 PARP14Q460N5 1801 aa27.61■■■□□ 2.01
COL9A3-213ENST00000489045 A0A0G2JMZ2 1700 aa27.61■■■□□ 2.01
COL9A3-213ENST00000489045 GREB1LQ9C091 1923 aaPredicted RBP27.61■■■□□ 2.01
COL9A3-213ENST00000489045 GSG1L2A8MUP6 293 aa27.6■■■□□ 2.01
COL9A3-213ENST00000489045 GLRX3O76003 335 aaKnown RBP27.6■■■□□ 2.01
COL9A3-213ENST00000489045 MX1P20591 662 aa27.6■■■□□ 2.01
COL9A3-213ENST00000489045 CYP2B6P20813 491 aa27.6■■■□□ 2.01
COL9A3-213ENST00000489045 GPR142Q7Z601 462 aa27.6■■■□□ 2.01
COL9A3-213ENST00000489045 SOCS4Q8WXH5 440 aa27.6■■■□□ 2.01
COL9A3-213ENST00000489045 NUDT12Q9BQG2 462 aa27.6■■■□□ 2.01
COL9A3-213ENST00000489045 ARHGEF10LQ9HCE6 1279 aa27.6■■■□□ 2.01
COL9A3-213ENST00000489045 SPDYE16A6NNV3 312 aaPredicted RBP27.59■■■□□ 2.01
COL9A3-213ENST00000489045 M0R2C6 588 aa27.59■■■□□ 2.01
COL9A3-213ENST00000489045 SGPL1O95470 568 aa27.59■■■□□ 2.01
COL9A3-213ENST00000489045 LBX2Q6XYB7 198 aa27.59■■■□□ 2.01
COL9A3-213ENST00000489045 PAK6Q9NQU5 681 aaPredicted RBP27.59■■■□□ 2.01
COL9A3-213ENST00000489045 GPAA1O43292 621 aa27.58■■■□□ 2.01
COL9A3-213ENST00000489045 LRRFIP1Q32MZ4 808 aaKnown RBP27.58■■■□□ 2.01
COL9A3-213ENST00000489045 SBK1Q52WX2 424 aa27.58■■■□□ 2.01
COL9A3-213ENST00000489045 KIAA1755Q5JYT7 1200 aa27.58■■■□□ 2.01
COL9A3-213ENST00000489045 PLEKHH3Q7Z736 793 aa27.58■■■□□ 2.01
COL9A3-213ENST00000489045 SIAH1Q8IUQ4 282 aa27.58■■■□□ 2.01
COL9A3-213ENST00000489045 TRIB2Q92519 343 aa27.58■■■□□ 2.01
COL9A3-213ENST00000489045 DEFB118Q96PH6 123 aa27.58■■■□□ 2.01
COL9A3-213ENST00000489045 TANGO6Q9C0B7 1094 aa27.58■■■□□ 2.01
COL9A3-213ENST00000489045 CEP290O15078 2479 aa27.57■■■□□ 2
COL9A3-213ENST00000489045 CCNA1P78396 465 aa27.57■■■□□ 2
COL9A3-213ENST00000489045 TRIM32Q13049 653 aa27.57■■■□□ 2
COL9A3-213ENST00000489045 ANKRD45Q5TZF3 282 aa27.57■■■□□ 2
COL9A3-213ENST00000489045 GIMAP6Q6P9H5 292 aa27.57■■■□□ 2
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms