RNA–Protein interactions for RNA: ENST00000488279.6

PTPN4-211, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 5

Gene PTPN4, Length 662 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-211ENST00000488279 ATP8A2Q9NTI2 1148 aa27.28■■□□□ 1.96
PTPN4-211ENST00000488279 PEX10O60683 326 aa27.27■■□□□ 1.96
PTPN4-211ENST00000488279 MBD4O95243 580 aa27.27■■□□□ 1.96
PTPN4-211ENST00000488279 UBE3CQ15386 1083 aa27.27■■□□□ 1.96
PTPN4-211ENST00000488279 SLFNL1Q499Z3 407 aa27.27■■□□□ 1.96
PTPN4-211ENST00000488279 MPHOSPH10O00566 681 aaKnown RBP27.26■■□□□ 1.95
PTPN4-211ENST00000488279 TFRCP02786 760 aaKnown RBP27.26■■□□□ 1.95
PTPN4-211ENST00000488279 MAPK4P31152 587 aa27.26■■□□□ 1.95
PTPN4-211ENST00000488279 ERVK-9P63128 1117 aa27.26■■□□□ 1.95
PTPN4-211ENST00000488279 ERVK-24P63145 666 aa27.26■■□□□ 1.95
PTPN4-211ENST00000488279 Q3C1V9 767 aa27.26■■□□□ 1.95
PTPN4-211ENST00000488279 ZSCAN25Q6NSZ9 544 aa27.26■■□□□ 1.95
PTPN4-211ENST00000488279 UBE2Q1Q7Z7E8 422 aa27.26■■□□□ 1.95
PTPN4-211ENST00000488279 DPF3Q92784 378 aa27.26■■□□□ 1.95
PTPN4-211ENST00000488279 DEFB118Q96PH6 123 aa27.26■■□□□ 1.95
PTPN4-211ENST00000488279 PAGR1Q9BTK6 254 aa27.26■■□□□ 1.95
PTPN4-211ENST00000488279 DCTPP1Q9H773 170 aa27.26■■□□□ 1.95
PTPN4-211ENST00000488279 PRKAB2O43741 272 aa27.25■■□□□ 1.95
PTPN4-211ENST00000488279 HMGCRP04035 888 aa27.25■■□□□ 1.95
PTPN4-211ENST00000488279 GUCY1A2P33402 732 aa27.25■■□□□ 1.95
PTPN4-211ENST00000488279 EVX2Q03828 476 aa27.25■■□□□ 1.95
PTPN4-211ENST00000488279 SEPT2Q15019 361 aa27.25■■□□□ 1.95
PTPN4-211ENST00000488279 CATSPERGQ6ZRH7 1159 aa27.25■■□□□ 1.95
PTPN4-211ENST00000488279 NUDT12Q9BQG2 462 aa27.25■■□□□ 1.95
PTPN4-211ENST00000488279 PAK6Q9NQU5 681 aaPredicted RBP27.25■■□□□ 1.95
PTPN4-211ENST00000488279 ECHDC1Q9NTX5 307 aa27.25■■□□□ 1.95
PTPN4-211ENST00000488279 SWAP70Q9UH65 585 aa27.25■■□□□ 1.95
PTPN4-211ENST00000488279 CYP2D6P10635 497 aa27.24■■□□□ 1.95
PTPN4-211ENST00000488279 VCAM1P19320 739 aa27.24■■□□□ 1.95
PTPN4-211ENST00000488279 SOCS4Q8WXH5 440 aa27.24■■□□□ 1.95
PTPN4-211ENST00000488279 DDRGK1Q96HY6 314 aa27.24■■□□□ 1.95
PTPN4-211ENST00000488279 RABGAP1Q9Y3P9 1069 aa27.24■■□□□ 1.95
PTPN4-211ENST00000488279 FARP2O94887 1054 aaPredicted RBP27.23■■□□□ 1.95
PTPN4-211ENST00000488279 CYP2B6P20813 491 aa27.23■■□□□ 1.95
PTPN4-211ENST00000488279 AMOTL1Q8IY63 956 aa27.23■■□□□ 1.95
PTPN4-211ENST00000488279 GPATCH3Q96I76 525 aa27.23■■□□□ 1.95
PTPN4-211ENST00000488279 HTATIP2Q9BUP3 242 aa27.23■■□□□ 1.95
PTPN4-211ENST00000488279 DOCK3Q8IZD9 2030 aa27.23■■□□□ 1.95
PTPN4-211ENST00000488279 POTEEQ6S8J3 1075 aa27.22■■□□□ 1.95
PTPN4-211ENST00000488279 DYNLL2Q96FJ2 89 aa27.22■■□□□ 1.95
PTPN4-211ENST00000488279 PORCNQ9H237 461 aa27.22■■□□□ 1.95
PTPN4-211ENST00000488279 H0YGN5 161 aa27.21■■□□□ 1.95
PTPN4-211ENST00000488279 CHGBP05060 677 aa27.21■■□□□ 1.95
PTPN4-211ENST00000488279 XRCC5P13010 732 aaKnown RBP27.21■■□□□ 1.95
PTPN4-211ENST00000488279 CCNA1P78396 465 aa27.21■■□□□ 1.95
PTPN4-211ENST00000488279 HABP4Q5JVS0 413 aaKnown RBP27.21■■□□□ 1.95
PTPN4-211ENST00000488279 TMEM179Q6ZVK1 233 aa27.21■■□□□ 1.95
PTPN4-211ENST00000488279 SLC44A5Q8NCS7 719 aa27.21■■□□□ 1.95
PTPN4-211ENST00000488279 CRISPLD2Q9H0B8 497 aa27.21■■□□□ 1.95
PTPN4-211ENST00000488279 XRN2Q9H0D6 950 aaKnown RBP eCLIP27.21■■□□□ 1.95
PTPN4-211ENST00000488279 RPAP3Q9H6T3 665 aaPredicted RBP27.21■■□□□ 1.95
PTPN4-211ENST00000488279 CWC22Q9HCG8 908 aaKnown RBP27.21■■□□□ 1.95
PTPN4-211ENST00000488279 HMX1Q9NP08 348 aaPredicted RBP27.21■■□□□ 1.95
PTPN4-211ENST00000488279 SLC4A4Q9Y6R1 1079 aa27.21■■□□□ 1.95
PTPN4-211ENST00000488279 RPTORQ8N122 1335 aa27.2■■□□□ 1.95
PTPN4-211ENST00000488279 C12orf60Q5U649 245 aa27.2■■□□□ 1.94
PTPN4-211ENST00000488279 GPR142Q7Z601 462 aa27.2■■□□□ 1.94
PTPN4-211ENST00000488279 PLEKHH3Q7Z736 793 aa27.2■■□□□ 1.94
PTPN4-211ENST00000488279 A0A1W2PRG0 241 aa27.19■■□□□ 1.94
PTPN4-211ENST00000488279 USP17L12C9JPN9 530 aa27.19■■□□□ 1.94
PTPN4-211ENST00000488279 USP17L21D6R901 530 aa27.19■■□□□ 1.94
PTPN4-211ENST00000488279 TRMT44Q8IYL2 757 aaKnown RBP27.19■■□□□ 1.94
PTPN4-211ENST00000488279 PUS7LQ9H0K6 701 aaKnown RBP27.19■■□□□ 1.94
PTPN4-211ENST00000488279 CNMDO75829 334 aa27.18■■□□□ 1.94
PTPN4-211ENST00000488279 GLRX3O76003 335 aaKnown RBP27.18■■□□□ 1.94
PTPN4-211ENST00000488279 TRIM32Q13049 653 aa27.18■■□□□ 1.94
PTPN4-211ENST00000488279 LBX2Q6XYB7 198 aa27.18■■□□□ 1.94
PTPN4-211ENST00000488279 TRIB2Q92519 343 aa27.18■■□□□ 1.94
PTPN4-211ENST00000488279 CCDC17Q96LX7 622 aa27.18■■□□□ 1.94
PTPN4-211ENST00000488279 DDX60LQ5H9U9 1706 aaKnown RBP27.18■■□□□ 1.94
PTPN4-211ENST00000488279 NAV1Q8NEY1 1877 aa27.17■■□□□ 1.94
PTPN4-211ENST00000488279 RGS2P41220 211 aa27.17■■□□□ 1.94
PTPN4-211ENST00000488279 MORN1Q5T089 497 aa27.17■■□□□ 1.94
PTPN4-211ENST00000488279 USP6NLQ92738 828 aa27.17■■□□□ 1.94
PTPN4-211ENST00000488279 HOXC10Q9NYD6 342 aa27.17■■□□□ 1.94
PTPN4-211ENST00000488279 CYP2D7A0A087X1C5 515 aa27.16■■□□□ 1.94
PTPN4-211ENST00000488279 AKR1B1P15121 316 aa27.16■■□□□ 1.94
PTPN4-211ENST00000488279 CDK8P49336 464 aa27.16■■□□□ 1.94
PTPN4-211ENST00000488279 COG2Q14746 738 aa27.16■■□□□ 1.94
PTPN4-211ENST00000488279 KBTBD3Q8NAB2 608 aa27.16■■□□□ 1.94
PTPN4-211ENST00000488279 SPDYE16A6NNV3 312 aaPredicted RBP27.15■■□□□ 1.94
PTPN4-211ENST00000488279 ZKSCAN1P17029 563 aaPredicted RBP27.15■■□□□ 1.94
PTPN4-211ENST00000488279 CTR9Q6PD62 1173 aa27.15■■□□□ 1.94
PTPN4-211ENST00000488279 C16orf86Q6ZW13 317 aa27.15■■□□□ 1.94
PTPN4-211ENST00000488279 SH2D4AQ9H788 454 aa27.15■■□□□ 1.94
PTPN4-211ENST00000488279 ARHGEF10LQ9HCE6 1279 aa27.15■■□□□ 1.94
PTPN4-211ENST00000488279 BTBD7Q9P203 1132 aa27.15■■□□□ 1.94
PTPN4-211ENST00000488279 COLQQ9Y215 455 aaPredicted RBP27.15■■□□□ 1.94
PTPN4-211ENST00000488279 PCDHB15Q9Y5E8 787 aa27.15■■□□□ 1.94
PTPN4-211ENST00000488279 NR2E3Q9Y5X4 410 aa27.15■■□□□ 1.94
PTPN4-211ENST00000488279 PRKAR2AP13861 404 aaKnown RBP27.14■■□□□ 1.94
PTPN4-211ENST00000488279 ICA1Q05084 483 aa27.14■■□□□ 1.94
PTPN4-211ENST00000488279 MAP3K21Q5TCX8 1036 aa27.14■■□□□ 1.94
PTPN4-211ENST00000488279 WDR78Q5VTH9 848 aa27.14■■□□□ 1.94
PTPN4-211ENST00000488279 TSHZ3Q63HK5 1081 aa27.14■■□□□ 1.94
PTPN4-211ENST00000488279 LPAR1Q92633 364 aa27.14■■□□□ 1.94
PTPN4-211ENST00000488279 PAWRQ96IZ0 340 aaKnown RBP27.14■■□□□ 1.94
PTPN4-211ENST00000488279 STRBPQ96SI9 672 aaKnown RBP27.14■■□□□ 1.94
PTPN4-211ENST00000488279 TANGO6Q9C0B7 1094 aa27.14■■□□□ 1.94
PTPN4-211ENST00000488279 SMIM22K7EJ46 135 aa27.13■■□□□ 1.93
Retrieved 100 of 20,778 RNA–protein pairs in 11.8 ms