RNA–Protein interactions for RNA: ENST00000487010.1

COL3A1-206, Transcript of collagen type III alpha 1 chain, humanhuman

TSL 2

Gene COL3A1, Length 2,054 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1-206ENST00000487010 RAB21Q9UL25 225 aa13.87□□□□□ -0.19
COL3A1-206ENST00000487010 DOCK2Q92608 1830 aa13.87□□□□□ -0.19
COL3A1-206ENST00000487010 ERICH2A1L162 156 aa13.87□□□□□ -0.19
COL3A1-206ENST00000487010 IRS4O14654 1257 aaPredicted RBP13.87□□□□□ -0.19
COL3A1-206ENST00000487010 IL2RBP14784 551 aa13.87□□□□□ -0.19
COL3A1-206ENST00000487010 FGFR2P21802 821 aa13.87□□□□□ -0.19
COL3A1-206ENST00000487010 AFMP43652 599 aa13.87□□□□□ -0.19
COL3A1-206ENST00000487010 RCAN1P53805 252 aa13.87□□□□□ -0.19
COL3A1-206ENST00000487010 STX17P56962 302 aa13.87□□□□□ -0.19
COL3A1-206ENST00000487010 TUBB4BP68371 445 aa13.87□□□□□ -0.19
COL3A1-206ENST00000487010 RAD51AP2Q09MP3 1159 aa13.87□□□□□ -0.19
COL3A1-206ENST00000487010 PUM3Q15397 648 aaKnown RBP13.87□□□□□ -0.19
COL3A1-206ENST00000487010 BEND6Q5SZJ8 279 aaPredicted RBP13.87□□□□□ -0.19
COL3A1-206ENST00000487010 KLHL10Q6JEL2 608 aa13.87□□□□□ -0.19
COL3A1-206ENST00000487010 PRDM11Q9NQV5 511 aa13.87□□□□□ -0.19
COL3A1-206ENST00000487010 TOMM22Q9NS69 142 aa13.87□□□□□ -0.19
COL3A1-206ENST00000487010 MYH6P13533 1939 aa13.87□□□□□ -0.19
COL3A1-206ENST00000487010 TRIM75PA6NK02 468 aa13.86□□□□□ -0.19
COL3A1-206ENST00000487010 PRKAB2O43741 272 aa13.86□□□□□ -0.19
COL3A1-206ENST00000487010 FECHP22830 423 aa13.86□□□□□ -0.19
COL3A1-206ENST00000487010 GTF2E1P29083 439 aaPredicted RBP13.86□□□□□ -0.19
COL3A1-206ENST00000487010 GYS2P54840 703 aa13.86□□□□□ -0.19
COL3A1-206ENST00000487010 FILIP1LQ4L180 1135 aa13.86□□□□□ -0.19
COL3A1-206ENST00000487010 ZNF654Q8IZM8 581 aa13.86□□□□□ -0.19
COL3A1-206ENST00000487010 CCDC51Q96ER9 411 aa13.86□□□□□ -0.19
COL3A1-206ENST00000487010 EPSTI1Q96J88 318 aa13.86□□□□□ -0.19
COL3A1-206ENST00000487010 ARAP2Q8WZ64 1704 aa13.86□□□□□ -0.19
COL3A1-206ENST00000487010 ITIH6Q6UXX5 1313 aa13.86□□□□□ -0.19
COL3A1-206ENST00000487010 CTAGE9A4FU28 777 aa13.86□□□□□ -0.19
COL3A1-206ENST00000487010 PPP1R3GB7ZBB8 358 aa13.86□□□□□ -0.19
COL3A1-206ENST00000487010 CASP14P31944 242 aa13.86□□□□□ -0.19
COL3A1-206ENST00000487010 SLC20A2Q08357 652 aa13.86□□□□□ -0.19
COL3A1-206ENST00000487010 DPYDQ12882 1025 aa13.86□□□□□ -0.19
COL3A1-206ENST00000487010 ZSCAN26Q16670 478 aa13.86□□□□□ -0.19
COL3A1-206ENST00000487010 KIF4BQ2VIQ3 1234 aa13.86□□□□□ -0.19
COL3A1-206ENST00000487010 HDXQ7Z353 690 aa13.86□□□□□ -0.19
COL3A1-206ENST00000487010 CADPS2Q86UW7 1296 aa13.86□□□□□ -0.19
COL3A1-206ENST00000487010 CNGA4Q8IV77 575 aa13.86□□□□□ -0.19
COL3A1-206ENST00000487010 MSL3Q8N5Y2 521 aaKnown RBP13.86□□□□□ -0.19
COL3A1-206ENST00000487010 NUP133Q8WUM0 1156 aa13.86□□□□□ -0.19
COL3A1-206ENST00000487010 BBXQ8WY36 941 aaPredicted RBP13.86□□□□□ -0.19
COL3A1-206ENST00000487010 TRERF1Q96PN7 1200 aa13.86□□□□□ -0.19
COL3A1-206ENST00000487010 GSDMAQ96QA5 445 aa13.86□□□□□ -0.19
COL3A1-206ENST00000487010 NACAP1Q9BZK3 213 aa13.86□□□□□ -0.19
COL3A1-206ENST00000487010 TSPYL1Q9H0U9 437 aa13.86□□□□□ -0.19
COL3A1-206ENST00000487010 TMOD3Q9NYL9 352 aa13.86□□□□□ -0.19
COL3A1-206ENST00000487010 STRCP1A6NGW2 1772 aa13.85□□□□□ -0.19
COL3A1-206ENST00000487010 PDE8AO60658 829 aa13.85□□□□□ -0.19
COL3A1-206ENST00000487010 GNAT2P19087 354 aa13.85□□□□□ -0.19
COL3A1-206ENST00000487010 CASP1P29466 404 aa13.85□□□□□ -0.19
COL3A1-206ENST00000487010 TDO2P48775 406 aa13.85□□□□□ -0.19
COL3A1-206ENST00000487010 HELBQ8NG08 1087 aaPredicted RBP13.85□□□□□ -0.19
COL3A1-206ENST00000487010 SHISA4Q96DD7 197 aa13.85□□□□□ -0.19
COL3A1-206ENST00000487010 PNKPQ96T60 521 aa13.85□□□□□ -0.19
COL3A1-206ENST00000487010 TTF2Q9UNY4 1162 aaKnown RBP13.85□□□□□ -0.19
COL3A1-206ENST00000487010 SLC4A4Q9Y6R1 1079 aa13.85□□□□□ -0.19
COL3A1-206ENST00000487010 MROH5Q6ZUA9 1318 aa13.85□□□□□ -0.19
COL3A1-206ENST00000487010 TOGARAM1Q9Y4F4 1720 aa13.85□□□□□ -0.19
COL3A1-206ENST00000487010 BCORQ6W2J9 1755 aa13.85□□□□□ -0.19
COL3A1-206ENST00000487010 FAM205CA6NFA0 338 aa13.84□□□□□ -0.19
COL3A1-206ENST00000487010 ERLIN1O75477 346 aa13.84□□□□□ -0.19
COL3A1-206ENST00000487010 STARD3NLO95772 234 aa13.84□□□□□ -0.19
COL3A1-206ENST00000487010 GYPCP04921 128 aa13.84□□□□□ -0.19
COL3A1-206ENST00000487010 FXR1P51114 621 aaKnown RBP eCLIP13.84□□□□□ -0.19
COL3A1-206ENST00000487010 RASGRF1Q13972 1273 aa13.84□□□□□ -0.19
COL3A1-206ENST00000487010 SLC35F6Q8N357 371 aa13.84□□□□□ -0.19
COL3A1-206ENST00000487010 LCORLQ8N3X6 602 aa13.84□□□□□ -0.19
COL3A1-206ENST00000487010 SYMPKQ92797 1274 aaKnown RBP13.84□□□□□ -0.19
COL3A1-206ENST00000487010 RNF26Q9BY78 433 aaPredicted RBP13.84□□□□□ -0.19
COL3A1-206ENST00000487010 TRMT112Q9UI30 125 aaKnown RBP13.84□□□□□ -0.19
COL3A1-206ENST00000487010 PNPLA7Q6ZV29 1317 aa13.84□□□□□ -0.19
COL3A1-206ENST00000487010 COL5A2P05997 1499 aaPredicted RBP13.84□□□□□ -0.19
COL3A1-206ENST00000487010 ANKRD36CQ5JPF3 1778 aa13.84□□□□□ -0.19
COL3A1-206ENST00000487010 MYH8P13535 1937 aa13.84□□□□□ -0.19
COL3A1-206ENST00000487010 SLC5A1P13866 664 aa13.84□□□□□ -0.19
COL3A1-206ENST00000487010 EARS2Q5JPH6 523 aaKnown RBP13.84□□□□□ -0.19
COL3A1-206ENST00000487010 TMTC1Q8IUR5 882 aa13.84□□□□□ -0.19
COL3A1-206ENST00000487010 SMYD4Q8IYR2 804 aaPredicted RBP13.84□□□□□ -0.19
COL3A1-206ENST00000487010 GOLGA5Q8TBA6 731 aa13.84□□□□□ -0.19
COL3A1-206ENST00000487010 FERMT2Q96AC1 680 aa13.84□□□□□ -0.19
COL3A1-206ENST00000487010 RNF41Q9H4P4 317 aaPredicted RBP13.84□□□□□ -0.19
COL3A1-206ENST00000487010 PDE11AQ9HCR9 933 aa13.84□□□□□ -0.19
COL3A1-206ENST00000487010 ASAP1Q9ULH1 1129 aa13.84□□□□□ -0.19
COL3A1-206ENST00000487010 L1RE1Q9UN81 338 aa13.84□□□□□ -0.19
COL3A1-206ENST00000487010 XBP1P17861 261 aa13.83□□□□□ -0.2
COL3A1-206ENST00000487010 KRT2P35908 639 aa13.83□□□□□ -0.2
COL3A1-206ENST00000487010 LMAN1P49257 510 aa13.83□□□□□ -0.2
COL3A1-206ENST00000487010 AKAP17AQ02040 695 aaKnown RBP13.83□□□□□ -0.2
COL3A1-206ENST00000487010 MCM6Q14566 821 aa13.83□□□□□ -0.2
COL3A1-206ENST00000487010 ACRBPQ8NEB7 543 aa13.83□□□□□ -0.2
COL3A1-206ENST00000487010 PHF20Q9BVI0 1012 aa13.83□□□□□ -0.2
COL3A1-206ENST00000487010 CARD10Q9BWT7 1032 aa13.83□□□□□ -0.2
COL3A1-206ENST00000487010 ABCB6Q9NP58 842 aa13.83□□□□□ -0.2
COL3A1-206ENST00000487010 VPS54Q9P1Q0 977 aa13.83□□□□□ -0.2
COL3A1-206ENST00000487010 LRP5O75197 1615 aa13.83□□□□□ -0.2
COL3A1-206ENST00000487010 BCL9LQ86UU0 1499 aa13.83□□□□□ -0.2
COL3A1-206ENST00000487010 BMP15O95972 392 aa13.83□□□□□ -0.2
COL3A1-206ENST00000487010 ERVK-24P63145 666 aa13.83□□□□□ -0.2
COL3A1-206ENST00000487010 PPP2R5BQ15173 497 aa13.83□□□□□ -0.2
COL3A1-206ENST00000487010 SEC23AQ15436 765 aa13.83□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 42.7 ms