RNA–Protein interactions for RNA: ENST00000483212.1

USP4-210, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 2

Gene USP4, Length 727 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-210ENST00000483212 CCDC83Q8IWF9 413 aa9.68□□□□□ -0.86
USP4-210ENST00000483212 CRACR2BQ8N4Y2 399 aaPredicted RBP9.68□□□□□ -0.86
USP4-210ENST00000483212 NECAB1Q8N987 351 aa9.68□□□□□ -0.86
USP4-210ENST00000483212 CCDC17Q96LX7 622 aa9.68□□□□□ -0.86
USP4-210ENST00000483212 FAM217BQ9NTX9 383 aaPredicted RBP9.68□□□□□ -0.86
USP4-210ENST00000483212 PAPPA2Q9BXP8 1791 aa9.68□□□□□ -0.86
USP4-210ENST00000483212 MYH8P13535 1937 aa9.67□□□□□ -0.86
USP4-210ENST00000483212 IQCA1LA6NCM1 817 aa9.67□□□□□ -0.86
USP4-210ENST00000483212 GOLGA8BA8MQT2 603 aa9.67□□□□□ -0.86
USP4-210ENST00000483212 CTDNEP1O95476 244 aa9.67□□□□□ -0.86
USP4-210ENST00000483212 RCAN1P53805 252 aa9.67□□□□□ -0.86
USP4-210ENST00000483212 FGD1P98174 961 aa9.67□□□□□ -0.86
USP4-210ENST00000483212 TROAPQ12815 778 aa9.67□□□□□ -0.86
USP4-210ENST00000483212 STK3Q13188 491 aa9.67□□□□□ -0.86
USP4-210ENST00000483212 CCDC178Q5BJE1 867 aa9.67□□□□□ -0.86
USP4-210ENST00000483212 NBPF12Q5TAG4 269 aaPredicted RBP9.67□□□□□ -0.86
USP4-210ENST00000483212 SIAH1Q8IUQ4 282 aa9.67□□□□□ -0.86
USP4-210ENST00000483212 ZNF654Q8IZM8 581 aa9.67□□□□□ -0.86
USP4-210ENST00000483212 TMTC2Q8N394 836 aa9.67□□□□□ -0.86
USP4-210ENST00000483212 ZC3H15Q8WU90 426 aaKnown RBP9.67□□□□□ -0.86
USP4-210ENST00000483212 CEP95Q96GE4 821 aa9.67□□□□□ -0.86
USP4-210ENST00000483212 MYL10Q9BUA6 226 aa9.67□□□□□ -0.86
USP4-210ENST00000483212 XPO5Q9HAV4 1204 aaKnown RBP eCLIP9.67□□□□□ -0.86
USP4-210ENST00000483212 MTMR4Q9NYA4 1195 aa9.67□□□□□ -0.86
USP4-210ENST00000483212 ERICH2A1L162 156 aa9.66□□□□□ -0.86
USP4-210ENST00000483212 ADM5C9JUS6 153 aa9.66□□□□□ -0.86
USP4-210ENST00000483212 DDAH1O94760 285 aa9.66□□□□□ -0.86
USP4-210ENST00000483212 GDF11O95390 407 aa9.66□□□□□ -0.86
USP4-210ENST00000483212 CDC27P30260 824 aa9.66□□□□□ -0.86
USP4-210ENST00000483212 CERKLQ49MI3 558 aaPredicted RBP9.66□□□□□ -0.86
USP4-210ENST00000483212 IFIT1BQ5T764 474 aaKnown RBP9.66□□□□□ -0.86
USP4-210ENST00000483212 PRAMEF18Q5VWM3 479 aa9.66□□□□□ -0.86
USP4-210ENST00000483212 TMEM179Q6ZVK1 233 aa9.66□□□□□ -0.86
USP4-210ENST00000483212 MIGA2Q7L4E1 593 aa9.66□□□□□ -0.86
USP4-210ENST00000483212 RAB11FIP4Q86YS3 637 aa9.66□□□□□ -0.86
USP4-210ENST00000483212 CLEC10AQ8IUN9 316 aa9.66□□□□□ -0.86
USP4-210ENST00000483212 SPRYD3Q8NCJ5 442 aa9.66□□□□□ -0.86
USP4-210ENST00000483212 SMARCC2Q8TAQ2 1214 aa9.66□□□□□ -0.86
USP4-210ENST00000483212 TMEM47Q9BQJ4 181 aa9.66□□□□□ -0.86
USP4-210ENST00000483212 SLKQ9H2G2 1235 aaPredicted RBP9.66□□□□□ -0.86
USP4-210ENST00000483212 NCOA5Q9HCD5 579 aaKnown RBP9.66□□□□□ -0.86
USP4-210ENST00000483212 ZNF112Q9UJU3 913 aa9.66□□□□□ -0.86
USP4-210ENST00000483212 SLC12A7Q9Y666 1083 aa9.66□□□□□ -0.86
USP4-210ENST00000483212 CCDC69A6NI79 296 aa9.65□□□□□ -0.86
USP4-210ENST00000483212 ZBTB43O43298 467 aa9.65□□□□□ -0.86
USP4-210ENST00000483212 DTNBO60941 627 aa9.65□□□□□ -0.86
USP4-210ENST00000483212 GH2P01242 217 aa9.65□□□□□ -0.86
USP4-210ENST00000483212 POTEJP0CG39 1038 aa9.65□□□□□ -0.86
USP4-210ENST00000483212 RXRAP19793 462 aa9.65□□□□□ -0.86
USP4-210ENST00000483212 CAP2P40123 477 aa9.65□□□□□ -0.86
USP4-210ENST00000483212 CCT2P78371 535 aaKnown RBP9.65□□□□□ -0.86
USP4-210ENST00000483212 SEPT2Q15019 361 aa9.65□□□□□ -0.86
USP4-210ENST00000483212 NTRK3Q16288 839 aa9.65□□□□□ -0.86
USP4-210ENST00000483212 ABCB5Q2M3G0 1257 aa9.65□□□□□ -0.86
USP4-210ENST00000483212 DLK2Q6UY11 383 aa9.65□□□□□ -0.86
USP4-210ENST00000483212 NFXL1Q6ZNB6 911 aa9.65□□□□□ -0.86
USP4-210ENST00000483212 PNMA8AQ86V59 439 aaPredicted RBP9.65□□□□□ -0.86
USP4-210ENST00000483212 MICU3Q86XE3 530 aa9.65□□□□□ -0.86
USP4-210ENST00000483212 NSUN7Q8NE18 718 aaKnown RBP9.65□□□□□ -0.86
USP4-210ENST00000483212 MKL1Q969V6 931 aa9.65□□□□□ -0.86
USP4-210ENST00000483212 LLPHQ9BRT6 129 aaKnown RBP9.65□□□□□ -0.86
USP4-210ENST00000483212 TRIM34Q9BYJ4 488 aa9.65□□□□□ -0.86
USP4-210ENST00000483212 NYAP2Q9P242 653 aa9.65□□□□□ -0.86
USP4-210ENST00000483212 ZBTB21Q9ULJ3 1066 aa9.65□□□□□ -0.86
USP4-210ENST00000483212 GOLGA8AA7E2F4 631 aa9.64□□□□□ -0.87
USP4-210ENST00000483212 JAK2O60674 1132 aa9.64□□□□□ -0.87
USP4-210ENST00000483212 TTLL1O95922 423 aa9.64□□□□□ -0.87
USP4-210ENST00000483212 SNHG28P0DPA3 235 aa9.64□□□□□ -0.87
USP4-210ENST00000483212 TOP1P11387 765 aaKnown RBP9.64□□□□□ -0.87
USP4-210ENST00000483212 ADD1P35611 737 aaKnown RBP9.64□□□□□ -0.87
USP4-210ENST00000483212 METAP2P50579 478 aaKnown RBP eCLIP9.64□□□□□ -0.87
USP4-210ENST00000483212 FUT2Q10981 343 aa9.64□□□□□ -0.87
USP4-210ENST00000483212 GRM4Q14833 912 aa9.64□□□□□ -0.87
USP4-210ENST00000483212 RASGRP2Q7LDG7 609 aa9.64□□□□□ -0.87
USP4-210ENST00000483212 FANCBQ8NB91 859 aa9.64□□□□□ -0.87
USP4-210ENST00000483212 PNMA1Q8ND90 353 aa9.64□□□□□ -0.87
USP4-210ENST00000483212 DCPSQ96C86 337 aaKnown RBP9.64□□□□□ -0.87
USP4-210ENST00000483212 MAP3K14Q99558 947 aa9.64□□□□□ -0.87
USP4-210ENST00000483212 ZNF341Q9BYN7 854 aa9.64□□□□□ -0.87
USP4-210ENST00000483212 KAT14Q9H8E8 782 aa9.64□□□□□ -0.87
USP4-210ENST00000483212 KANSL2Q9H9L4 492 aa9.64□□□□□ -0.87
USP4-210ENST00000483212 DAXXQ9UER7 740 aaPredicted RBP9.64□□□□□ -0.87
USP4-210ENST00000483212 STX8Q9UNK0 236 aa9.64□□□□□ -0.87
USP4-210ENST00000483212 ZSCAN21Q9Y5A6 473 aaPredicted RBP9.64□□□□□ -0.87
USP4-210ENST00000483212 A0A1W2PRG0 241 aa9.63□□□□□ -0.87
USP4-210ENST00000483212 PTPDC1A2A3K4 754 aa9.63□□□□□ -0.87
USP4-210ENST00000483212 MPHOSPH10O00566 681 aaKnown RBP9.63□□□□□ -0.87
USP4-210ENST00000483212 CALM1P0DP23 149 aa9.63□□□□□ -0.87
USP4-210ENST00000483212 CALM2P0DP24 149 aa9.63□□□□□ -0.87
USP4-210ENST00000483212 CALM3P0DP25 149 aa9.63□□□□□ -0.87
USP4-210ENST00000483212 EEF2P13639 858 aaKnown RBP9.63□□□□□ -0.87
USP4-210ENST00000483212 FDPSP14324 419 aaKnown RBP9.63□□□□□ -0.87
USP4-210ENST00000483212 VEGFAP15692 232 aaPredicted RBP9.63□□□□□ -0.87
USP4-210ENST00000483212 ICA1Q05084 483 aa9.63□□□□□ -0.87
USP4-210ENST00000483212 RTN1Q16799 776 aa9.63□□□□□ -0.87
USP4-210ENST00000483212 SLC35G1Q2M3R5 365 aa9.63□□□□□ -0.87
USP4-210ENST00000483212 DCAF15Q66K64 600 aa9.63□□□□□ -0.87
USP4-210ENST00000483212 KRT26Q7Z3Y9 468 aa9.63□□□□□ -0.87
USP4-210ENST00000483212 CATIPQ7Z7H3 387 aa9.63□□□□□ -0.87
USP4-210ENST00000483212 NBPF11Q86T75 865 aa9.63□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms