RNA–Protein interactions for RNA: ENST00000479161.5

C9orf3-217, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 5

Gene C9orf3, Length 942 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-217ENST00000479161 PDE4BQ07343 736 aa18.43■□□□□ 0.54
C9orf3-217ENST00000479161 PPARAQ07869 468 aa18.43■□□□□ 0.54
C9orf3-217ENST00000479161 BMP2KLQ5H9B9 411 aa18.43■□□□□ 0.54
C9orf3-217ENST00000479161 USP17L2Q6R6M4 530 aa18.43■□□□□ 0.54
C9orf3-217ENST00000479161 C17orf99Q6UX52 265 aa18.43■□□□□ 0.54
C9orf3-217ENST00000479161 CCDC129Q6ZRS4 1044 aa18.43■□□□□ 0.54
C9orf3-217ENST00000479161 ZNF589Q86UQ0 364 aaPredicted RBP18.43■□□□□ 0.54
C9orf3-217ENST00000479161 CCDC84Q86UT8 332 aaPredicted RBP18.43■□□□□ 0.54
C9orf3-217ENST00000479161 RUFY2Q8WXA3 655 aa18.43■□□□□ 0.54
C9orf3-217ENST00000479161 DSCC1Q9BVC3 393 aa18.43■□□□□ 0.54
C9orf3-217ENST00000479161 KANSL2Q9H9L4 492 aa18.43■□□□□ 0.54
C9orf3-217ENST00000479161 MKNK2Q9HBH9 465 aa18.43■□□□□ 0.54
C9orf3-217ENST00000479161 TMOD4Q9NZQ9 345 aa18.43■□□□□ 0.54
C9orf3-217ENST00000479161 FRMD4AQ9P2Q2 1039 aaPredicted RBP18.43■□□□□ 0.54
C9orf3-217ENST00000479161 SYNPO2Q9UMS6 1093 aa18.43■□□□□ 0.54
C9orf3-217ENST00000479161 RASA1P20936 1047 aa18.42■□□□□ 0.54
C9orf3-217ENST00000479161 HMGCS2P54868 508 aa18.42■□□□□ 0.54
C9orf3-217ENST00000479161 SP3Q02447 781 aa18.42■□□□□ 0.54
C9orf3-217ENST00000479161 MTMR2Q13614 643 aa18.42■□□□□ 0.54
C9orf3-217ENST00000479161 SEPT2Q15019 361 aa18.42■□□□□ 0.54
C9orf3-217ENST00000479161 RAB3GAP1Q15042 981 aa18.42■□□□□ 0.54
C9orf3-217ENST00000479161 PKN2Q16513 984 aaKnown RBP18.42■□□□□ 0.54
C9orf3-217ENST00000479161 SHROOM1Q2M3G4 852 aaPredicted RBP18.42■□□□□ 0.54
C9orf3-217ENST00000479161 VPS53Q5VIR6 699 aa18.42■□□□□ 0.54
C9orf3-217ENST00000479161 CWC27Q6UX04 472 aaKnown RBP18.42■□□□□ 0.54
C9orf3-217ENST00000479161 SH2D4AQ9H788 454 aa18.42■□□□□ 0.54
C9orf3-217ENST00000479161 PPP4R2Q9NY27 417 aa18.42■□□□□ 0.54
C9orf3-217ENST00000479161 PLIN4Q96Q06 1357 aa18.42■□□□□ 0.54
C9orf3-217ENST00000479161 SMIM22K7EJ46 135 aa18.41■□□□□ 0.54
C9orf3-217ENST00000479161 AKR1B1P15121 316 aa18.41■□□□□ 0.54
C9orf3-217ENST00000479161 CHMLP26374 656 aa18.41■□□□□ 0.54
C9orf3-217ENST00000479161 ARHGEF6Q15052 776 aa18.41■□□□□ 0.54
C9orf3-217ENST00000479161 GADL1Q6ZQY3 521 aa18.41■□□□□ 0.54
C9orf3-217ENST00000479161 ZNF444Q8N0Y2 327 aaPredicted RBP18.41■□□□□ 0.54
C9orf3-217ENST00000479161 ERO1AQ96HE7 468 aa18.41■□□□□ 0.54
C9orf3-217ENST00000479161 TMX2Q9Y320 296 aa18.41■□□□□ 0.54
C9orf3-217ENST00000479161 ORC4O43929 436 aa18.4■□□□□ 0.54
C9orf3-217ENST00000479161 GNRH1P01148 92 aa18.4■□□□□ 0.54
C9orf3-217ENST00000479161 GCLCP48506 637 aaPredicted RBP18.4■□□□□ 0.54
C9orf3-217ENST00000479161 PPP4R3BQ5MIZ7 849 aa18.4■□□□□ 0.54
C9orf3-217ENST00000479161 SIAH1Q8IUQ4 282 aa18.4■□□□□ 0.54
C9orf3-217ENST00000479161 LPAR1Q92633 364 aa18.4■□□□□ 0.54
C9orf3-217ENST00000479161 ARHGEF10LQ9HCE6 1279 aa18.4■□□□□ 0.54
C9orf3-217ENST00000479161 EMILIN3Q9NT22 766 aa18.4■□□□□ 0.54
C9orf3-217ENST00000479161 DDX52Q9Y2R4 599 aaKnown RBP eCLIP18.4■□□□□ 0.54
C9orf3-217ENST00000479161 MPHOSPH10O00566 681 aaKnown RBP18.39■□□□□ 0.53
C9orf3-217ENST00000479161 BCRP11274 1271 aa18.39■□□□□ 0.53
C9orf3-217ENST00000479161 OSBPP22059 807 aa18.39■□□□□ 0.53
C9orf3-217ENST00000479161 TREML2Q5T2D2 321 aa18.39■□□□□ 0.53
C9orf3-217ENST00000479161 CTU1Q7Z7A3 348 aaKnown RBP18.39■□□□□ 0.53
C9orf3-217ENST00000479161 NEDD1Q8NHV4 660 aa18.39■□□□□ 0.53
C9orf3-217ENST00000479161 GTF3C2Q8WUA4 911 aaPredicted RBP18.39■□□□□ 0.53
C9orf3-217ENST00000479161 GNL3Q9BVP2 549 aaKnown RBP eCLIP18.39■□□□□ 0.53
C9orf3-217ENST00000479161 NYAP2Q9P242 653 aa18.39■□□□□ 0.53
C9orf3-217ENST00000479161 CTNNA3Q9UI47 895 aa18.39■□□□□ 0.53
C9orf3-217ENST00000479161 LAMA4Q16363 1823 aa18.39■□□□□ 0.53
C9orf3-217ENST00000479161 IGKV6D-41A0A0C4DH26 115 aa18.38■□□□□ 0.53
C9orf3-217ENST00000479161 ICA1Q05084 483 aa18.38■□□□□ 0.53
C9orf3-217ENST00000479161 ACER1Q8TDN7 264 aa18.38■□□□□ 0.53
C9orf3-217ENST00000479161 MKL1Q969V6 931 aa18.38■□□□□ 0.53
C9orf3-217ENST00000479161 FEZ1Q99689 392 aa18.38■□□□□ 0.53
C9orf3-217ENST00000479161 A0A1W2PRG0 241 aa18.37■□□□□ 0.53
C9orf3-217ENST00000479161 LBX2Q6XYB7 198 aa18.37■□□□□ 0.53
C9orf3-217ENST00000479161 ASCC2Q9H1I8 757 aaPredicted RBP18.37■□□□□ 0.53
C9orf3-217ENST00000479161 USP17L15C9J2P7 530 aa18.36■□□□□ 0.53
C9orf3-217ENST00000479161 USP17L13C9JLJ4 530 aa18.36■□□□□ 0.53
C9orf3-217ENST00000479161 USP17L11C9JVI0 530 aa18.36■□□□□ 0.53
C9orf3-217ENST00000479161 USP17L18D6R9N7 530 aa18.36■□□□□ 0.53
C9orf3-217ENST00000479161 USP17L22D6RA61 530 aa18.36■□□□□ 0.53
C9orf3-217ENST00000479161 USP17L17D6RBQ6 530 aa18.36■□□□□ 0.53
C9orf3-217ENST00000479161 USP17L19D6RCP7 530 aa18.36■□□□□ 0.53
C9orf3-217ENST00000479161 USP17L20D6RJB6 530 aa18.36■□□□□ 0.53
C9orf3-217ENST00000479161 SGSM2O43147 1006 aa18.36■□□□□ 0.53
C9orf3-217ENST00000479161 NOVP48745 357 aa18.36■□□□□ 0.53
C9orf3-217ENST00000479161 LACTBP83111 547 aaPredicted RBP18.36■□□□□ 0.53
C9orf3-217ENST00000479161 USP17L24Q0WX57 530 aa18.36■□□□□ 0.53
C9orf3-217ENST00000479161 FAM110CQ1W6H9 321 aa18.36■□□□□ 0.53
C9orf3-217ENST00000479161 STAG1Q8WVM7 1258 aa18.36■□□□□ 0.53
C9orf3-217ENST00000479161 RNF41Q9H4P4 317 aaPredicted RBP18.36■□□□□ 0.53
C9orf3-217ENST00000479161 VCPKMTQ9H867 229 aa18.36■□□□□ 0.53
C9orf3-217ENST00000479161 MYH4Q9Y623 1939 aa18.36■□□□□ 0.53
C9orf3-217ENST00000479161 CYP2C8P10632 490 aa18.35■□□□□ 0.53
C9orf3-217ENST00000479161 EEF2P13639 858 aaKnown RBP18.35■□□□□ 0.53
C9orf3-217ENST00000479161 VCAM1P19320 739 aa18.35■□□□□ 0.53
C9orf3-217ENST00000479161 PRMT2P55345 433 aa18.35■□□□□ 0.53
C9orf3-217ENST00000479161 KIF22Q14807 665 aa18.35■□□□□ 0.53
C9orf3-217ENST00000479161 CATSPERGQ6ZRH7 1159 aa18.35■□□□□ 0.53
C9orf3-217ENST00000479161 SMCR8Q8TEV9 937 aaPredicted RBP18.35■□□□□ 0.53
C9orf3-217ENST00000479161 TCP11L1Q9NUJ3 509 aa18.35■□□□□ 0.53
C9orf3-217ENST00000479161 MTMR4Q9NYA4 1195 aa18.35■□□□□ 0.53
C9orf3-217ENST00000479161 MORF4L1Q9UBU8 362 aa18.35■□□□□ 0.53
C9orf3-217ENST00000479161 MGAMO43451 1857 aa18.35■□□□□ 0.53
C9orf3-217ENST00000479161 MYPNQ86TC9 1320 aa18.34■□□□□ 0.53
C9orf3-217ENST00000479161 ZNF213O14771 459 aa18.34■□□□□ 0.53
C9orf3-217ENST00000479161 TSPY3P0CV98 308 aa18.34■□□□□ 0.53
C9orf3-217ENST00000479161 TSPY8P0CW00 308 aa18.34■□□□□ 0.53
C9orf3-217ENST00000479161 IRX3P78415 501 aaPredicted RBP18.34■□□□□ 0.53
C9orf3-217ENST00000479161 AKNAD1Q5T1N1 836 aa18.34■□□□□ 0.53
C9orf3-217ENST00000479161 GOPCQ9HD26 462 aa18.34■□□□□ 0.53
C9orf3-217ENST00000479161 RLFQ13129 1914 aa18.33■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms