RNA–Protein interactions for RNA: ENST00000476379.5

CCDC39-204, Transcript of coiled-coil domain containing 39, humanhuman

TSL 2

Gene CCDC39, Length 4,451 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39-204ENST00000476379 UPF1Q92900 1129 aaKnown RBP eCLIP5.66□□□□□ -1.5
CCDC39-204ENST00000476379 PLCD4Q9BRC7 762 aa5.66□□□□□ -1.5
CCDC39-204ENST00000476379 GJA3Q9Y6H8 435 aa5.66□□□□□ -1.5
CCDC39-204ENST00000476379 COL16A1Q07092 1604 aaPredicted RBP5.66□□□□□ -1.5
CCDC39-204ENST00000476379 COL15A1P39059 1388 aa5.66□□□□□ -1.5
CCDC39-204ENST00000476379 CEMIPQ8WUJ3 1361 aa5.66□□□□□ -1.5
CCDC39-204ENST00000476379 CCDC194A0A1B0GVG4 234 aa5.66□□□□□ -1.5
CCDC39-204ENST00000476379 RAD17O75943 681 aa5.66□□□□□ -1.5
CCDC39-204ENST00000476379 CCDC96Q2M329 555 aa5.66□□□□□ -1.5
CCDC39-204ENST00000476379 TOGARAM2Q6ZUX3 1019 aa5.66□□□□□ -1.5
CCDC39-204ENST00000476379 ADAT2Q7Z6V5 191 aaKnown RBP5.66□□□□□ -1.5
CCDC39-204ENST00000476379 PLBD2Q8NHP8 589 aa5.66□□□□□ -1.5
CCDC39-204ENST00000476379 IFT81Q8WYA0 676 aa5.66□□□□□ -1.5
CCDC39-204ENST00000476379 HPS3Q969F9 1004 aa5.66□□□□□ -1.5
CCDC39-204ENST00000476379 ARFGAP3Q9NP61 516 aa5.66□□□□□ -1.5
CCDC39-204ENST00000476379 PIH1D3Q9NQM4 214 aaKnown RBP5.66□□□□□ -1.5
CCDC39-204ENST00000476379 PCDHAC2Q9Y5I4 1007 aa5.66□□□□□ -1.5
CCDC39-204ENST00000476379 MON2Q7Z3U7 1717 aa5.65□□□□□ -1.5
CCDC39-204ENST00000476379 PP2D1A8MPX8 630 aa5.65□□□□□ -1.5
CCDC39-204ENST00000476379 CTAGE5O15320 804 aa5.65□□□□□ -1.5
CCDC39-204ENST00000476379 TEX33O43247 280 aa5.65□□□□□ -1.5
CCDC39-204ENST00000476379 CBFA2T2O43439 604 aa5.65□□□□□ -1.5
CCDC39-204ENST00000476379 CAMTA2O94983 1202 aa5.65□□□□□ -1.5
CCDC39-204ENST00000476379 UBA7P41226 1012 aa5.65□□□□□ -1.5
CCDC39-204ENST00000476379 CLCN6P51797 869 aa5.65□□□□□ -1.5
CCDC39-204ENST00000476379 CYP27A1Q02318 531 aa5.65□□□□□ -1.5
CCDC39-204ENST00000476379 HLTFQ14527 1009 aaKnown RBP eCLIP5.65□□□□□ -1.5
CCDC39-204ENST00000476379 MAEAQ7L5Y9 396 aa5.65□□□□□ -1.5
CCDC39-204ENST00000476379 IQCA1Q86XH1 822 aa5.65□□□□□ -1.5
CCDC39-204ENST00000476379 TRIM31Q9BZY9 425 aa5.65□□□□□ -1.5
CCDC39-204ENST00000476379 ZNF277Q9NRM2 450 aaPredicted RBP5.65□□□□□ -1.5
CCDC39-204ENST00000476379 FAM207AQ9NSI2 230 aaPredicted RBP5.65□□□□□ -1.5
CCDC39-204ENST00000476379 ZBTB12Q9Y330 459 aaPredicted RBP5.65□□□□□ -1.5
CCDC39-204ENST00000476379 SHPRHQ149N8 1683 aa5.65□□□□□ -1.5
CCDC39-204ENST00000476379 ADGRB2O60241 1585 aa5.65□□□□□ -1.5
CCDC39-204ENST00000476379 MAP3K15Q6ZN16 1313 aa5.65□□□□□ -1.5
CCDC39-204ENST00000476379 ZSCAN12O43309 604 aa5.65□□□□□ -1.5
CCDC39-204ENST00000476379 CTDNEP1O95476 244 aa5.65□□□□□ -1.5
CCDC39-204ENST00000476379 SLC5A1P13866 664 aa5.65□□□□□ -1.5
CCDC39-204ENST00000476379 TXLNAP40222 546 aa5.65□□□□□ -1.5
CCDC39-204ENST00000476379 MCAMP43121 646 aa5.65□□□□□ -1.5
CCDC39-204ENST00000476379 SLC15A2Q16348 729 aa5.65□□□□□ -1.5
CCDC39-204ENST00000476379 NCAPH2Q6IBW4 605 aa5.65□□□□□ -1.5
CCDC39-204ENST00000476379 CATIPQ7Z7H3 387 aa5.65□□□□□ -1.5
CCDC39-204ENST00000476379 FBXO18Q8NFZ0 1043 aa5.65□□□□□ -1.5
CCDC39-204ENST00000476379 NLRC4Q9NPP4 1024 aa5.65□□□□□ -1.5
CCDC39-204ENST00000476379 ZSWIM5Q9P217 1185 aa5.65□□□□□ -1.5
CCDC39-204ENST00000476379 BCL9O00512 1426 aa5.65□□□□□ -1.51
CCDC39-204ENST00000476379 TRIM49BA6NDI0 452 aa5.65□□□□□ -1.51
CCDC39-204ENST00000476379 USP17L12C9JPN9 530 aa5.65□□□□□ -1.51
CCDC39-204ENST00000476379 USP17L21D6R901 530 aa5.65□□□□□ -1.51
CCDC39-204ENST00000476379 USP8P40818 1118 aa5.65□□□□□ -1.51
CCDC39-204ENST00000476379 STAT6P42226 847 aa5.65□□□□□ -1.51
CCDC39-204ENST00000476379 GSDMDP57764 484 aa5.65□□□□□ -1.51
CCDC39-204ENST00000476379 ASIC1P78348 528 aa5.65□□□□□ -1.51
CCDC39-204ENST00000476379 BMS1Q14692 1282 aaKnown RBP5.65□□□□□ -1.51
CCDC39-204ENST00000476379 ODF2Q5BJF6 829 aa5.65□□□□□ -1.51
CCDC39-204ENST00000476379 GIGYF2Q6Y7W6 1299 aaKnown RBP5.65□□□□□ -1.51
CCDC39-204ENST00000476379 LCORLQ8N3X6 602 aa5.65□□□□□ -1.51
CCDC39-204ENST00000476379 KRI1Q8N9T8 703 aaKnown RBP5.65□□□□□ -1.51
CCDC39-204ENST00000476379 SMARCC1Q92922 1105 aaPredicted RBP5.65□□□□□ -1.51
CCDC39-204ENST00000476379 GJA10Q969M2 543 aa5.65□□□□□ -1.51
CCDC39-204ENST00000476379 WDR24Q96S15 920 aa5.65□□□□□ -1.51
CCDC39-204ENST00000476379 HAUS7Q99871 368 aa5.65□□□□□ -1.51
CCDC39-204ENST00000476379 CSRNP2Q9H175 543 aa5.65□□□□□ -1.51
CCDC39-204ENST00000476379 PARP3Q9Y6F1 533 aa5.65□□□□□ -1.51
CCDC39-204ENST00000476379 ABCC12Q96J65 1359 aa5.65□□□□□ -1.51
CCDC39-204ENST00000476379 SLIT2O94813 1529 aa5.65□□□□□ -1.51
CCDC39-204ENST00000476379 SH3TC1Q8TE82 1336 aa5.65□□□□□ -1.51
CCDC39-204ENST00000476379 TRIM75PA6NK02 468 aa5.64□□□□□ -1.51
CCDC39-204ENST00000476379 TMCO5BA8MYB1 307 aa5.64□□□□□ -1.51
CCDC39-204ENST00000476379 PDE6AP16499 860 aa5.64□□□□□ -1.51
CCDC39-204ENST00000476379 CASP14P31944 242 aa5.64□□□□□ -1.51
CCDC39-204ENST00000476379 KCTD16Q68DU8 428 aa5.64□□□□□ -1.51
CCDC39-204ENST00000476379 ARMCX5Q6P1M9 558 aa5.64□□□□□ -1.51
CCDC39-204ENST00000476379 RASGRP2Q7LDG7 609 aa5.64□□□□□ -1.51
CCDC39-204ENST00000476379 CACNA2D4Q7Z3S7 1137 aa5.64□□□□□ -1.51
CCDC39-204ENST00000476379 NELFCDQ8IXH7 590 aa5.64□□□□□ -1.51
CCDC39-204ENST00000476379 SMAP1Q8IYB5 467 aaPredicted RBP5.64□□□□□ -1.51
CCDC39-204ENST00000476379 LINC00301Q8NCQ3 95 aa5.64□□□□□ -1.51
CCDC39-204ENST00000476379 UHMK1Q8TAS1 419 aaKnown RBP5.64□□□□□ -1.51
CCDC39-204ENST00000476379 NLRP3Q96P20 1036 aa5.64□□□□□ -1.51
CCDC39-204ENST00000476379 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP5.64□□□□□ -1.51
CCDC39-204ENST00000476379 OGFRQ9NZT2 677 aa5.64□□□□□ -1.51
CCDC39-204ENST00000476379 TRIM10Q9UDY6 481 aa5.64□□□□□ -1.51
CCDC39-204ENST00000476379 THRAP3Q9Y2W1 955 aaKnown RBP5.64□□□□□ -1.51
CCDC39-204ENST00000476379 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP5.64□□□□□ -1.51
CCDC39-204ENST00000476379 KNDC1Q76NI1 1749 aa5.64□□□□□ -1.51
CCDC39-204ENST00000476379 FAM196BA6NMK8 535 aa5.64□□□□□ -1.51
CCDC39-204ENST00000476379 PFKFB2O60825 505 aa5.64□□□□□ -1.51
CCDC39-204ENST00000476379 CYP2D6P10635 497 aa5.64□□□□□ -1.51
CCDC39-204ENST00000476379 KRT9P35527 623 aa5.64□□□□□ -1.51
CCDC39-204ENST00000476379 EVX2Q03828 476 aa5.64□□□□□ -1.51
CCDC39-204ENST00000476379 GPR162Q16538 588 aa5.64□□□□□ -1.51
CCDC39-204ENST00000476379 RNF187Q5TA31 235 aaPredicted RBP5.64□□□□□ -1.51
CCDC39-204ENST00000476379 PRR5LQ6MZQ0 368 aa5.64□□□□□ -1.51
CCDC39-204ENST00000476379 NAA16Q6N069 864 aaPredicted RBP5.64□□□□□ -1.51
CCDC39-204ENST00000476379 MAPKAPK5Q8IW41 473 aa5.64□□□□□ -1.51
CCDC39-204ENST00000476379 RIN2Q8WYP3 895 aaPredicted RBP5.64□□□□□ -1.51
CCDC39-204ENST00000476379 APPBP2Q92624 585 aa5.64□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms