RNA–Protein interactions for RNA: ENST00000472524.1

CCDC88B-205, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 779 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-205ENST00000472524 CABP5Q9NP86 173 aa18.97■□□□□ 0.63
CCDC88B-205ENST00000472524 DCP1AQ9NPI6 582 aaPredicted RBP18.97■□□□□ 0.63
CCDC88B-205ENST00000472524 ECHDC1Q9NTX5 307 aa18.97■□□□□ 0.63
CCDC88B-205ENST00000472524 CEP290O15078 2479 aa18.97■□□□□ 0.63
CCDC88B-205ENST00000472524 PLXNB2O15031 1838 aa18.97■□□□□ 0.63
CCDC88B-205ENST00000472524 PRKAB2O43741 272 aa18.96■□□□□ 0.63
CCDC88B-205ENST00000472524 PEX10O60683 326 aa18.96■□□□□ 0.63
CCDC88B-205ENST00000472524 TSHZ3Q63HK5 1081 aa18.96■□□□□ 0.63
CCDC88B-205ENST00000472524 USP17L2Q6R6M4 530 aa18.96■□□□□ 0.63
CCDC88B-205ENST00000472524 GPATCH3Q96I76 525 aa18.96■□□□□ 0.63
CCDC88B-205ENST00000472524 CRISPLD2Q9H0B8 497 aa18.96■□□□□ 0.63
CCDC88B-205ENST00000472524 PRO3102Q9H379 93 aa18.96■□□□□ 0.63
CCDC88B-205ENST00000472524 GJD2Q9UKL4 321 aa18.96■□□□□ 0.63
CCDC88B-205ENST00000472524 PCDHB15Q9Y5E8 787 aa18.96■□□□□ 0.63
CCDC88B-205ENST00000472524 SZT2Q5T011 3432 aa18.96■□□□□ 0.63
CCDC88B-205ENST00000472524 HOXA7P31268 230 aaPredicted RBP18.95■□□□□ 0.62
CCDC88B-205ENST00000472524 GABPAQ06546 454 aa18.95■□□□□ 0.62
CCDC88B-205ENST00000472524 TRIM32Q13049 653 aa18.95■□□□□ 0.62
CCDC88B-205ENST00000472524 P2RX7Q99572 595 aaKnown RBP18.95■□□□□ 0.62
CCDC88B-205ENST00000472524 XRN2Q9H0D6 950 aaKnown RBP eCLIP18.95■□□□□ 0.62
CCDC88B-205ENST00000472524 EMILIN3Q9NT22 766 aa18.95■□□□□ 0.62
CCDC88B-205ENST00000472524 NR2E3Q9Y5X4 410 aa18.95■□□□□ 0.62
CCDC88B-205ENST00000472524 MPHOSPH10O00566 681 aaKnown RBP18.94■□□□□ 0.62
CCDC88B-205ENST00000472524 HERVK_113P62684 666 aa18.94■□□□□ 0.62
CCDC88B-205ENST00000472524 UBE3CQ15386 1083 aa18.94■□□□□ 0.62
CCDC88B-205ENST00000472524 ZSCAN25Q6NSZ9 544 aa18.94■□□□□ 0.62
CCDC88B-205ENST00000472524 SLC44A5Q8NCS7 719 aa18.94■□□□□ 0.62
CCDC88B-205ENST00000472524 ACER1Q8TDN7 264 aa18.94■□□□□ 0.62
CCDC88B-205ENST00000472524 DIS3LQ8TF46 1054 aaKnown RBP18.94■□□□□ 0.62
CCDC88B-205ENST00000472524 MORF4L1Q9UBU8 362 aa18.94■□□□□ 0.62
CCDC88B-205ENST00000472524 TRIOBPQ9H2D6 2365 aa18.94■□□□□ 0.62
CCDC88B-205ENST00000472524 EVI5O60447 810 aa18.93■□□□□ 0.62
CCDC88B-205ENST00000472524 HMGCRP04035 888 aa18.93■□□□□ 0.62
CCDC88B-205ENST00000472524 SEPT2Q15019 361 aa18.93■□□□□ 0.62
CCDC88B-205ENST00000472524 DYNLL2Q96FJ2 89 aa18.93■□□□□ 0.62
CCDC88B-205ENST00000472524 PAWRQ96IZ0 340 aaKnown RBP18.93■□□□□ 0.62
CCDC88B-205ENST00000472524 CRBNQ96SW2 442 aa18.93■□□□□ 0.62
CCDC88B-205ENST00000472524 TXNRD2Q9NNW7 524 aa18.93■□□□□ 0.62
CCDC88B-205ENST00000472524 ATP8A2Q9NTI2 1148 aa18.93■□□□□ 0.62
CCDC88B-205ENST00000472524 CYP2D7A0A087X1C5 515 aa18.92■□□□□ 0.62
CCDC88B-205ENST00000472524 GUCY1A2P33402 732 aa18.92■□□□□ 0.62
CCDC88B-205ENST00000472524 USP14P54578 494 aa18.92■□□□□ 0.62
CCDC88B-205ENST00000472524 C12orf42Q96LP6 360 aa18.92■□□□□ 0.62
CCDC88B-205ENST00000472524 PAGR1Q9BTK6 254 aa18.92■□□□□ 0.62
CCDC88B-205ENST00000472524 PUS7LQ9H0K6 701 aaKnown RBP18.92■□□□□ 0.62
CCDC88B-205ENST00000472524 SLC4A4Q9Y6R1 1079 aa18.92■□□□□ 0.62
CCDC88B-205ENST00000472524 AMOTL1Q8IY63 956 aa18.91■□□□□ 0.62
CCDC88B-205ENST00000472524 KBTBD3Q8NAB2 608 aa18.91■□□□□ 0.62
CCDC88B-205ENST00000472524 TRIB2Q92519 343 aa18.91■□□□□ 0.62
CCDC88B-205ENST00000472524 DDRGK1Q96HY6 314 aa18.91■□□□□ 0.62
CCDC88B-205ENST00000472524 KIAA1683Q9H0B3 1180 aa18.91■□□□□ 0.62
CCDC88B-205ENST00000472524 SWAP70Q9UH65 585 aa18.91■□□□□ 0.62
CCDC88B-205ENST00000472524 SMIM22K7EJ46 135 aa18.9■□□□□ 0.62
CCDC88B-205ENST00000472524 CAPN2P17655 700 aa18.9■□□□□ 0.62
CCDC88B-205ENST00000472524 VCAM1P19320 739 aa18.9■□□□□ 0.62
CCDC88B-205ENST00000472524 CYP2B6P20813 491 aa18.9■□□□□ 0.62
CCDC88B-205ENST00000472524 POTEEQ6S8J3 1075 aa18.9■□□□□ 0.62
CCDC88B-205ENST00000472524 GPRC5AQ8NFJ5 357 aa18.9■□□□□ 0.62
CCDC88B-205ENST00000472524 RPTORQ8N122 1335 aa18.9■□□□□ 0.62
CCDC88B-205ENST00000472524 USP17L15C9J2P7 530 aa18.89■□□□□ 0.61
CCDC88B-205ENST00000472524 USP17L13C9JLJ4 530 aa18.89■□□□□ 0.61
CCDC88B-205ENST00000472524 USP17L12C9JPN9 530 aa18.89■□□□□ 0.61
CCDC88B-205ENST00000472524 USP17L11C9JVI0 530 aa18.89■□□□□ 0.61
CCDC88B-205ENST00000472524 USP17L21D6R901 530 aa18.89■□□□□ 0.61
CCDC88B-205ENST00000472524 USP17L18D6R9N7 530 aa18.89■□□□□ 0.61
CCDC88B-205ENST00000472524 USP17L22D6RA61 530 aa18.89■□□□□ 0.61
CCDC88B-205ENST00000472524 USP17L17D6RBQ6 530 aa18.89■□□□□ 0.61
CCDC88B-205ENST00000472524 USP17L19D6RCP7 530 aa18.89■□□□□ 0.61
CCDC88B-205ENST00000472524 USP17L20D6RJB6 530 aa18.89■□□□□ 0.61
CCDC88B-205ENST00000472524 ERVK-9P63128 1117 aa18.89■□□□□ 0.61
CCDC88B-205ENST00000472524 ERVK-24P63145 666 aa18.89■□□□□ 0.61
CCDC88B-205ENST00000472524 USP17L24Q0WX57 530 aa18.89■□□□□ 0.61
CCDC88B-205ENST00000472524 C12orf60Q5U649 245 aa18.89■□□□□ 0.61
CCDC88B-205ENST00000472524 NECAB2Q7Z6G3 386 aa18.89■□□□□ 0.61
CCDC88B-205ENST00000472524 GTF3C2Q8WUA4 911 aaPredicted RBP18.89■□□□□ 0.61
CCDC88B-205ENST00000472524 HMX1Q9NP08 348 aaPredicted RBP18.89■□□□□ 0.61
CCDC88B-205ENST00000472524 RBPJLQ9UBG7 517 aa18.89■□□□□ 0.61
CCDC88B-205ENST00000472524 PARP14Q460N5 1801 aa18.88■□□□□ 0.61
CCDC88B-205ENST00000472524 RLFQ13129 1914 aa18.88■□□□□ 0.61
CCDC88B-205ENST00000472524 AKR1B1P15121 316 aa18.88■□□□□ 0.61
CCDC88B-205ENST00000472524 MNX1P50219 401 aaPredicted RBP18.88■□□□□ 0.61
CCDC88B-205ENST00000472524 Q3C1V9 767 aa18.88■□□□□ 0.61
CCDC88B-205ENST00000472524 TMEM179Q6ZVK1 233 aa18.88■□□□□ 0.61
CCDC88B-205ENST00000472524 CLEC10AQ8IUN9 316 aa18.88■□□□□ 0.61
CCDC88B-205ENST00000472524 CCAR1Q8IX12 1150 aaKnown RBP18.88■□□□□ 0.61
CCDC88B-205ENST00000472524 OTUD7AQ8TE49 926 aaPredicted RBP18.88■□□□□ 0.61
CCDC88B-205ENST00000472524 RPAP3Q9H6T3 665 aaPredicted RBP18.88■□□□□ 0.61
CCDC88B-205ENST00000472524 STAP2Q9UGK3 403 aa18.88■□□□□ 0.61
CCDC88B-205ENST00000472524 A0A1W2PRG0 241 aa18.87■□□□□ 0.61
CCDC88B-205ENST00000472524 CDK8P49336 464 aa18.87■□□□□ 0.61
CCDC88B-205ENST00000472524 TTC41PQ6P2S7 1318 aa18.87■□□□□ 0.61
CCDC88B-205ENST00000472524 CATSPERGQ6ZRH7 1159 aa18.87■□□□□ 0.61
CCDC88B-205ENST00000472524 ANKLE1Q8NAG6 615 aa18.87■□□□□ 0.61
CCDC88B-205ENST00000472524 APPBP2Q92624 585 aa18.87■□□□□ 0.61
CCDC88B-205ENST00000472524 OSBP2Q969R2 916 aa18.87■□□□□ 0.61
CCDC88B-205ENST00000472524 NUDT12Q9BQG2 462 aa18.87■□□□□ 0.61
CCDC88B-205ENST00000472524 PORCNQ9H237 461 aa18.87■□□□□ 0.61
CCDC88B-205ENST00000472524 MYH4Q9Y623 1939 aa18.87■□□□□ 0.61
CCDC88B-205ENST00000472524 COL11A1P12107 1806 aaPredicted RBP18.86■□□□□ 0.61
CCDC88B-205ENST00000472524 LAMA3Q16787 3333 aa18.86■□□□□ 0.61
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms