RNA–Protein interactions for RNA: ENST00000472056.5

COL6A3-209, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 8,628 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-209ENST00000472056 HSPA6P17066 643 aa14.67□□□□□ -0.06
COL6A3-209ENST00000472056 KRT9P35527 623 aa14.67□□□□□ -0.06
COL6A3-209ENST00000472056 DYNC1I2Q13409 638 aaKnown RBP14.67□□□□□ -0.06
COL6A3-209ENST00000472056 ZNF804AQ7Z570 1209 aa14.67□□□□□ -0.06
COL6A3-209ENST00000472056 TMEM110-MUSTN1A8MSY1 372 aa14.67□□□□□ -0.06
COL6A3-209ENST00000472056 SHANK2Q9UPX8 1470 aa14.67□□□□□ -0.06
COL6A3-209ENST00000472056 ASPHQ12797 758 aa14.67□□□□□ -0.06
COL6A3-209ENST00000472056 KSR2Q6VAB6 950 aa14.67□□□□□ -0.06
COL6A3-209ENST00000472056 NYXQ9GZU5 481 aa14.67□□□□□ -0.06
COL6A3-209ENST00000472056 SOS2Q07890 1332 aaPredicted RBP14.67□□□□□ -0.06
COL6A3-209ENST00000472056 CBX8Q9HC52 389 aa14.67□□□□□ -0.06
COL6A3-209ENST00000472056 PASKQ96RG2 1323 aa14.67□□□□□ -0.06
COL6A3-209ENST00000472056 TEX14Q8IWB6 1497 aa14.67□□□□□ -0.06
COL6A3-209ENST00000472056 MAST1Q9Y2H9 1570 aa14.67□□□□□ -0.06
COL6A3-209ENST00000472056 RPS6KA2Q15349 733 aa14.67□□□□□ -0.06
COL6A3-209ENST00000472056 KRT12Q99456 494 aa14.67□□□□□ -0.06
COL6A3-209ENST00000472056 MAPKBP1O60336 1514 aa14.67□□□□□ -0.06
COL6A3-209ENST00000472056 NECAB1Q8N987 351 aa14.67□□□□□ -0.06
COL6A3-209ENST00000472056 ZBTB40Q9NUA8 1239 aa14.67□□□□□ -0.06
COL6A3-209ENST00000472056 TTC4O95801 387 aa14.66□□□□□ -0.06
COL6A3-209ENST00000472056 MYL1P05976 194 aa14.66□□□□□ -0.06
COL6A3-209ENST00000472056 UAP1Q16222 522 aaPredicted RBP14.66□□□□□ -0.06
COL6A3-209ENST00000472056 DCAF17Q5H9S7 520 aaPredicted RBP14.66□□□□□ -0.06
COL6A3-209ENST00000472056 EPHB4P54760 987 aa14.66□□□□□ -0.06
COL6A3-209ENST00000472056 NSMCE1Q8WV22 266 aa14.66□□□□□ -0.06
COL6A3-209ENST00000472056 DDX21Q9NR30 783 aaKnown RBP eCLIP14.66□□□□□ -0.06
COL6A3-209ENST00000472056 ARHGAP42A6NI28 874 aa14.66□□□□□ -0.06
COL6A3-209ENST00000472056 TBC1D8O95759 1140 aa14.66□□□□□ -0.06
COL6A3-209ENST00000472056 SATB2Q9UPW6 733 aa14.66□□□□□ -0.06
COL6A3-209ENST00000472056 CROCCQ5TZA2 2017 aa14.66□□□□□ -0.06
COL6A3-209ENST00000472056 PRAG1Q86YV5 1406 aa14.66□□□□□ -0.06
COL6A3-209ENST00000472056 HOXB7P09629 217 aa14.66□□□□□ -0.06
COL6A3-209ENST00000472056 PCDHB15Q9Y5E8 787 aa14.66□□□□□ -0.06
COL6A3-209ENST00000472056 LRRC8AQ8IWT6 810 aa14.66□□□□□ -0.06
COL6A3-209ENST00000472056 LINS1Q8NG48 757 aa14.66□□□□□ -0.06
COL6A3-209ENST00000472056 SLC4A4Q9Y6R1 1079 aa14.66□□□□□ -0.06
COL6A3-209ENST00000472056 JRKLQ9Y4A0 524 aa14.66□□□□□ -0.06
COL6A3-209ENST00000472056 POLR2DO15514 142 aaKnown RBP14.66□□□□□ -0.06
COL6A3-209ENST00000472056 CUL4BQ13620 913 aa14.66□□□□□ -0.06
COL6A3-209ENST00000472056 ADALQ6DHV7 355 aa14.66□□□□□ -0.06
COL6A3-209ENST00000472056 ZNF354CQ86Y25 554 aa14.66□□□□□ -0.06
COL6A3-209ENST00000472056 RRP15Q9Y3B9 282 aaKnown RBP14.66□□□□□ -0.06
COL6A3-209ENST00000472056 ADGRL1O94910 1474 aa14.66□□□□□ -0.06
COL6A3-209ENST00000472056 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP14.65□□□□□ -0.06
COL6A3-209ENST00000472056 WASLO00401 505 aaPredicted RBP14.65□□□□□ -0.06
COL6A3-209ENST00000472056 CCDC184Q52MB2 194 aa14.65□□□□□ -0.06
COL6A3-209ENST00000472056 GALNT17Q6IS24 598 aa14.65□□□□□ -0.06
COL6A3-209ENST00000472056 ARHGEF18Q6ZSZ5 1173 aa14.65□□□□□ -0.06
COL6A3-209ENST00000472056 IFNL2Q8IZJ0 200 aa14.65□□□□□ -0.06
COL6A3-209ENST00000472056 SPINK5Q9NQ38 1064 aaPredicted RBP14.65□□□□□ -0.06
COL6A3-209ENST00000472056 PPANQ9NQ55 473 aaKnown RBP14.65□□□□□ -0.06
COL6A3-209ENST00000472056 SERPINI1Q99574 410 aa14.65□□□□□ -0.06
COL6A3-209ENST00000472056 XAB2Q9HCS7 855 aaKnown RBP14.65□□□□□ -0.06
COL6A3-209ENST00000472056 MRPL40Q9NQ50 206 aaKnown RBP14.65□□□□□ -0.06
COL6A3-209ENST00000472056 CFAP74Q9C0B2 1584 aa14.65□□□□□ -0.06
COL6A3-209ENST00000472056 SRRM1Q8IYB3 904 aaKnown RBP14.65□□□□□ -0.06
COL6A3-209ENST00000472056 IPO11Q9UI26 975 aaKnown RBP14.65□□□□□ -0.06
COL6A3-209ENST00000472056 MAGEB6P1A0A0J9YX57 407 aa14.65□□□□□ -0.06
COL6A3-209ENST00000472056 H0YCG3 227 aa14.65□□□□□ -0.06
COL6A3-209ENST00000472056 MCF2L2Q86YR7 1114 aa14.65□□□□□ -0.06
COL6A3-209ENST00000472056 OGFOD1Q8N543 542 aa14.65□□□□□ -0.06
COL6A3-209ENST00000472056 HAND2P61296 217 aa14.65□□□□□ -0.06
COL6A3-209ENST00000472056 FAM69CQ0P6D2 419 aa14.65□□□□□ -0.06
COL6A3-209ENST00000472056 ABCC1P33527 1531 aa14.65□□□□□ -0.06
COL6A3-209ENST00000472056 SART1O43290 800 aaKnown RBP14.65□□□□□ -0.06
COL6A3-209ENST00000472056 MAN1A2O60476 641 aa14.65□□□□□ -0.07
COL6A3-209ENST00000472056 PDZD4Q76G19 769 aaPredicted RBP14.65□□□□□ -0.07
COL6A3-209ENST00000472056 ARHGAP18Q8N392 663 aa14.65□□□□□ -0.07
COL6A3-209ENST00000472056 AFAP1Q8N556 730 aa14.65□□□□□ -0.07
COL6A3-209ENST00000472056 MYH11P35749 1972 aa14.65□□□□□ -0.07
COL6A3-209ENST00000472056 PEG3Q9GZU2 1588 aa14.64□□□□□ -0.07
COL6A3-209ENST00000472056 CHMP2AO43633 222 aa14.64□□□□□ -0.07
COL6A3-209ENST00000472056 MAGEA9P43362 315 aa14.64□□□□□ -0.07
COL6A3-209ENST00000472056 GNGT1P63211 74 aa14.64□□□□□ -0.07
COL6A3-209ENST00000472056 CSRNP1Q96S65 589 aa14.64□□□□□ -0.07
COL6A3-209ENST00000472056 H7C1D1 291 aa14.64□□□□□ -0.07
COL6A3-209ENST00000472056 PSMD7P51665 324 aa14.64□□□□□ -0.07
COL6A3-209ENST00000472056 KIAA1468Q9P260 1216 aa14.64□□□□□ -0.07
COL6A3-209ENST00000472056 NFE2L3Q9Y4A8 694 aa14.64□□□□□ -0.07
COL6A3-209ENST00000472056 SYCP2Q9BX26 1530 aa14.64□□□□□ -0.07
COL6A3-209ENST00000472056 F6X3S4 739 aa14.64□□□□□ -0.07
COL6A3-209ENST00000472056 UTP18Q9Y5J1 556 aaKnown RBP eCLIP14.64□□□□□ -0.07
COL6A3-209ENST00000472056 CLTAP09496 248 aa14.64□□□□□ -0.07
COL6A3-209ENST00000472056 PNMA2Q9UL42 364 aa14.64□□□□□ -0.07
COL6A3-209ENST00000472056 PRPF6O94906 941 aaKnown RBP14.64□□□□□ -0.07
COL6A3-209ENST00000472056 ST13P4Q8IZP2 240 aaPredicted RBP14.64□□□□□ -0.07
COL6A3-209ENST00000472056 TRIM11Q96F44 468 aa14.64□□□□□ -0.07
COL6A3-209ENST00000472056 CUEDC2Q9H467 287 aa14.64□□□□□ -0.07
COL6A3-209ENST00000472056 ANGPTL3Q9Y5C1 460 aa14.64□□□□□ -0.07
COL6A3-209ENST00000472056 VWA3AA6NCI4 1184 aa14.64□□□□□ -0.07
COL6A3-209ENST00000472056 TTI1O43156 1089 aa14.64□□□□□ -0.07
COL6A3-209ENST00000472056 SLFNL1Q499Z3 407 aa14.64□□□□□ -0.07
COL6A3-209ENST00000472056 DAAM1Q9Y4D1 1078 aa14.64□□□□□ -0.07
COL6A3-209ENST00000472056 TRIM68Q6AZZ1 485 aa14.63□□□□□ -0.07
COL6A3-209ENST00000472056 NME8Q8N427 588 aa14.63□□□□□ -0.07
COL6A3-209ENST00000472056 KDM5BQ9UGL1 1544 aa14.63□□□□□ -0.07
COL6A3-209ENST00000472056 BLMP54132 1417 aaPredicted RBP14.63□□□□□ -0.07
COL6A3-209ENST00000472056 MAGEA1P43355 309 aa14.63□□□□□ -0.07
COL6A3-209ENST00000472056 LRRC8CQ8TDW0 803 aa14.63□□□□□ -0.07
COL6A3-209ENST00000472056 SYNMO15061 1565 aa14.63□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms