RNA–Protein interactions for RNA: ENST00000471752.1

USP48-207, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 3

Gene USP48, Length 445 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-207ENST00000471752 ABCB5Q2M3G0 1257 aa9.81□□□□□ -0.84
USP48-207ENST00000471752 CLASRPQ8N2M8 674 aaKnown RBP9.81□□□□□ -0.84
USP48-207ENST00000471752 SLAIN1Q8ND83 568 aa9.81□□□□□ -0.84
USP48-207ENST00000471752 SPDYE1Q8NFV5 336 aaPredicted RBP9.81□□□□□ -0.84
USP48-207ENST00000471752 PXYLP1Q8TE99 480 aa9.81□□□□□ -0.84
USP48-207ENST00000471752 USP6NLQ92738 828 aa9.81□□□□□ -0.84
USP48-207ENST00000471752 DPF3Q92784 378 aa9.81□□□□□ -0.84
USP48-207ENST00000471752 COA7Q96BR5 231 aa9.81□□□□□ -0.84
USP48-207ENST00000471752 PUS7LQ9H0K6 701 aaKnown RBP9.81□□□□□ -0.84
USP48-207ENST00000471752 AS3MTQ9HBK9 375 aa9.81□□□□□ -0.84
USP48-207ENST00000471752 PAK6Q9NQU5 681 aaPredicted RBP9.81□□□□□ -0.84
USP48-207ENST00000471752 PAG1Q9NWQ8 432 aa9.81□□□□□ -0.84
USP48-207ENST00000471752 MCM9Q9NXL9 1143 aa9.81□□□□□ -0.84
USP48-207ENST00000471752 FLRT1Q9NZU1 646 aa9.81□□□□□ -0.84
USP48-207ENST00000471752 SERPINB13Q9UIV8 391 aa9.81□□□□□ -0.84
USP48-207ENST00000471752 DDX19BQ9UMR2 479 aa9.81□□□□□ -0.84
USP48-207ENST00000471752 PCDHB15Q9Y5E8 787 aa9.81□□□□□ -0.84
USP48-207ENST00000471752 CDK5RAP2Q96SN8 1893 aa9.81□□□□□ -0.84
USP48-207ENST00000471752 HAX1O00165 279 aa9.8□□□□□ -0.84
USP48-207ENST00000471752 POLR3DP05423 398 aaPredicted RBP9.8□□□□□ -0.84
USP48-207ENST00000471752 HLA-DOAP06340 250 aa9.8□□□□□ -0.84
USP48-207ENST00000471752 AKR1B1P15121 316 aa9.8□□□□□ -0.84
USP48-207ENST00000471752 ATP5JP18859 108 aa9.8□□□□□ -0.84
USP48-207ENST00000471752 ADD2P35612 726 aa9.8□□□□□ -0.84
USP48-207ENST00000471752 GCLCP48506 637 aaPredicted RBP9.8□□□□□ -0.84
USP48-207ENST00000471752 FXR1P51114 621 aaKnown RBP eCLIP9.8□□□□□ -0.84
USP48-207ENST00000471752 UBXN2AP68543 259 aa9.8□□□□□ -0.84
USP48-207ENST00000471752 IRX3P78415 501 aaPredicted RBP9.8□□□□□ -0.84
USP48-207ENST00000471752 MKRN4PQ13434 485 aaPredicted RBP9.8□□□□□ -0.84
USP48-207ENST00000471752 USP17L2Q6R6M4 530 aa9.8□□□□□ -0.84
USP48-207ENST00000471752 CATSPERGQ6ZRH7 1159 aa9.8□□□□□ -0.84
USP48-207ENST00000471752 STK11IPQ8N1F8 1099 aa9.8□□□□□ -0.84
USP48-207ENST00000471752 GPRC5AQ8NFJ5 357 aa9.8□□□□□ -0.84
USP48-207ENST00000471752 PAWRQ96IZ0 340 aaKnown RBP9.8□□□□□ -0.84
USP48-207ENST00000471752 HAUS7Q99871 368 aa9.8□□□□□ -0.84
USP48-207ENST00000471752 TRIM34Q9BYJ4 488 aa9.8□□□□□ -0.84
USP48-207ENST00000471752 EHD4Q9H223 541 aa9.8□□□□□ -0.84
USP48-207ENST00000471752 TMOD4Q9NZQ9 345 aa9.8□□□□□ -0.84
USP48-207ENST00000471752 RBBP6Q7Z6E9 1792 aaKnown RBP9.79□□□□□ -0.84
USP48-207ENST00000471752 C19orf81C9J6K1 198 aa9.79□□□□□ -0.84
USP48-207ENST00000471752 RAB11FIP3O75154 756 aa9.79□□□□□ -0.84
USP48-207ENST00000471752 FARP2O94887 1054 aaPredicted RBP9.79□□□□□ -0.84
USP48-207ENST00000471752 VCAM1P19320 739 aa9.79□□□□□ -0.84
USP48-207ENST00000471752 CCND3P30281 292 aaPredicted RBP9.79□□□□□ -0.84
USP48-207ENST00000471752 ERVK-9P63128 1117 aa9.79□□□□□ -0.84
USP48-207ENST00000471752 ERVK-24P63145 666 aa9.79□□□□□ -0.84
USP48-207ENST00000471752 CACNB2Q08289 660 aaPredicted RBP9.79□□□□□ -0.84
USP48-207ENST00000471752 HSP90AB4PQ58FF6 505 aa9.79□□□□□ -0.84
USP48-207ENST00000471752 MORN1Q5T089 497 aa9.79□□□□□ -0.84
USP48-207ENST00000471752 GPR142Q7Z601 462 aa9.79□□□□□ -0.84
USP48-207ENST00000471752 TTC6Q86TZ1 520 aa9.79□□□□□ -0.84
USP48-207ENST00000471752 PPIL4Q8WUA2 492 aaKnown RBP eCLIP9.79□□□□□ -0.84
USP48-207ENST00000471752 GNL3Q9BVP2 549 aaKnown RBP eCLIP9.79□□□□□ -0.84
USP48-207ENST00000471752 CRISPLD2Q9H0B8 497 aa9.79□□□□□ -0.84
USP48-207ENST00000471752 XRN2Q9H0D6 950 aaKnown RBP eCLIP9.79□□□□□ -0.84
USP48-207ENST00000471752 RPAP3Q9H6T3 665 aaPredicted RBP9.79□□□□□ -0.84
USP48-207ENST00000471752 RBM27Q9P2N5 1060 aaKnown RBP9.79□□□□□ -0.84
USP48-207ENST00000471752 PNMA3Q9UL41 463 aa9.79□□□□□ -0.84
USP48-207ENST00000471752 SPDYE16A6NNV3 312 aaPredicted RBP9.78□□□□□ -0.84
USP48-207ENST00000471752 USP17L12C9JPN9 530 aa9.78□□□□□ -0.84
USP48-207ENST00000471752 USP17L21D6R901 530 aa9.78□□□□□ -0.84
USP48-207ENST00000471752 MPHOSPH10O00566 681 aaKnown RBP9.78□□□□□ -0.84
USP48-207ENST00000471752 PABPC4Q13310 644 aaKnown RBP eCLIP9.78□□□□□ -0.84
USP48-207ENST00000471752 CTR9Q6PD62 1173 aa9.78□□□□□ -0.84
USP48-207ENST00000471752 SPICE1Q8N0Z3 855 aa9.78□□□□□ -0.84
USP48-207ENST00000471752 TRPV1Q8NER1 839 aa9.78□□□□□ -0.84
USP48-207ENST00000471752 C12orf42Q96LP6 360 aa9.78□□□□□ -0.84
USP48-207ENST00000471752 CRNKL1Q9BZJ0 848 aaKnown RBP9.78□□□□□ -0.84
USP48-207ENST00000471752 KIAA1683Q9H0B3 1180 aa9.78□□□□□ -0.84
USP48-207ENST00000471752 PRO3102Q9H379 93 aa9.78□□□□□ -0.84
USP48-207ENST00000471752 DCTPP1Q9H773 170 aa9.78□□□□□ -0.84
USP48-207ENST00000471752 MGAMO43451 1857 aa9.78□□□□□ -0.84
USP48-207ENST00000471752 COL6A3P12111 3177 aa9.78□□□□□ -0.84
USP48-207ENST00000471752 LOC285556D6RIA3 1793 aa9.78□□□□□ -0.84
USP48-207ENST00000471752 PLXNB2O15031 1838 aa9.77□□□□□ -0.84
USP48-207ENST00000471752 ATAD5Q96QE3 1844 aa9.77□□□□□ -0.84
USP48-207ENST00000471752 USP17L15C9J2P7 530 aa9.77□□□□□ -0.85
USP48-207ENST00000471752 USP17L13C9JLJ4 530 aa9.77□□□□□ -0.85
USP48-207ENST00000471752 USP17L11C9JVI0 530 aa9.77□□□□□ -0.85
USP48-207ENST00000471752 USP17L18D6R9N7 530 aa9.77□□□□□ -0.85
USP48-207ENST00000471752 USP17L22D6RA61 530 aa9.77□□□□□ -0.85
USP48-207ENST00000471752 USP17L17D6RBQ6 530 aa9.77□□□□□ -0.85
USP48-207ENST00000471752 USP17L19D6RCP7 530 aa9.77□□□□□ -0.85
USP48-207ENST00000471752 USP17L20D6RJB6 530 aa9.77□□□□□ -0.85
USP48-207ENST00000471752 HMMRO75330 724 aa9.77□□□□□ -0.85
USP48-207ENST00000471752 MS4A1P11836 297 aa9.77□□□□□ -0.85
USP48-207ENST00000471752 PRKAR2AP13861 404 aaKnown RBP9.77□□□□□ -0.85
USP48-207ENST00000471752 CDK8P49336 464 aa9.77□□□□□ -0.85
USP48-207ENST00000471752 USP17L24Q0WX57 530 aa9.77□□□□□ -0.85
USP48-207ENST00000471752 PDE3AQ14432 1141 aa9.77□□□□□ -0.85
USP48-207ENST00000471752 TTF1Q15361 905 aaPredicted RBP9.77□□□□□ -0.85
USP48-207ENST00000471752 MAP3K21Q5TCX8 1036 aa9.77□□□□□ -0.85
USP48-207ENST00000471752 C12orf60Q5U649 245 aa9.77□□□□□ -0.85
USP48-207ENST00000471752 LHX8Q68G74 356 aa9.77□□□□□ -0.85
USP48-207ENST00000471752 PLEKHH3Q7Z736 793 aa9.77□□□□□ -0.85
USP48-207ENST00000471752 NPLOC4Q8TAT6 608 aa9.77□□□□□ -0.85
USP48-207ENST00000471752 OSBP2Q969R2 916 aa9.77□□□□□ -0.85
USP48-207ENST00000471752 SEC62Q99442 399 aaKnown RBP9.77□□□□□ -0.85
USP48-207ENST00000471752 FEZ1Q99689 392 aa9.77□□□□□ -0.85
USP48-207ENST00000471752 TBC1D2Q9BYX2 928 aa9.77□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms