RNA–Protein interactions for RNA: ENST00000469802.5

COL9A3-208, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 2

Gene COL9A3, Length 680 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-208ENST00000469802 ALPK3Q96L96 1907 aa19.7■□□□□ 0.74
COL9A3-208ENST00000469802 CEP290O15078 2479 aa19.69■□□□□ 0.74
COL9A3-208ENST00000469802 PRKAB2O43741 272 aa19.69■□□□□ 0.74
COL9A3-208ENST00000469802 CYP2D6P10635 497 aa19.69■□□□□ 0.74
COL9A3-208ENST00000469802 ACER1Q8TDN7 264 aa19.69■□□□□ 0.74
COL9A3-208ENST00000469802 ATP8A2Q9NTI2 1148 aa19.69■□□□□ 0.74
COL9A3-208ENST00000469802 ECHDC1Q9NTX5 307 aa19.69■□□□□ 0.74
COL9A3-208ENST00000469802 RBPJLQ9UBG7 517 aa19.69■□□□□ 0.74
COL9A3-208ENST00000469802 FRMPD3Q5JV73 1810 aa19.69■□□□□ 0.74
COL9A3-208ENST00000469802 PEX10O60683 326 aa19.68■□□□□ 0.74
COL9A3-208ENST00000469802 VCAM1P19320 739 aa19.68■□□□□ 0.74
COL9A3-208ENST00000469802 USP14P54578 494 aa19.68■□□□□ 0.74
COL9A3-208ENST00000469802 SLC44A5Q8NCS7 719 aa19.68■□□□□ 0.74
COL9A3-208ENST00000469802 GPRC5AQ8NFJ5 357 aa19.68■□□□□ 0.74
COL9A3-208ENST00000469802 U2AF1L4Q8WU68 220 aaKnown RBP19.68■□□□□ 0.74
COL9A3-208ENST00000469802 CABP5Q9NP86 173 aa19.68■□□□□ 0.74
COL9A3-208ENST00000469802 PAK6Q9NQU5 681 aaPredicted RBP19.68■□□□□ 0.74
COL9A3-208ENST00000469802 ZNF236Q9UL36 1845 aa19.67■□□□□ 0.74
COL9A3-208ENST00000469802 ERVK-9P63128 1117 aa19.67■□□□□ 0.74
COL9A3-208ENST00000469802 ERVK-24P63145 666 aa19.67■□□□□ 0.74
COL9A3-208ENST00000469802 SEPT2Q15019 361 aa19.67■□□□□ 0.74
COL9A3-208ENST00000469802 ZYXQ15942 572 aaKnown RBP19.67■□□□□ 0.74
COL9A3-208ENST00000469802 SWAP70Q9UH65 585 aa19.67■□□□□ 0.74
COL9A3-208ENST00000469802 USP17L15C9J2P7 530 aa19.66■□□□□ 0.74
COL9A3-208ENST00000469802 USP17L13C9JLJ4 530 aa19.66■□□□□ 0.74
COL9A3-208ENST00000469802 USP17L11C9JVI0 530 aa19.66■□□□□ 0.74
COL9A3-208ENST00000469802 USP17L18D6R9N7 530 aa19.66■□□□□ 0.74
COL9A3-208ENST00000469802 USP17L22D6RA61 530 aa19.66■□□□□ 0.74
COL9A3-208ENST00000469802 USP17L17D6RBQ6 530 aa19.66■□□□□ 0.74
COL9A3-208ENST00000469802 USP17L19D6RCP7 530 aa19.66■□□□□ 0.74
COL9A3-208ENST00000469802 USP17L20D6RJB6 530 aa19.66■□□□□ 0.74
COL9A3-208ENST00000469802 HMGCRP04035 888 aa19.66■□□□□ 0.74
COL9A3-208ENST00000469802 USP17L24Q0WX57 530 aa19.66■□□□□ 0.74
COL9A3-208ENST00000469802 ZSCAN25Q6NSZ9 544 aa19.66■□□□□ 0.74
COL9A3-208ENST00000469802 LBX2Q6XYB7 198 aa19.66■□□□□ 0.74
COL9A3-208ENST00000469802 PCDHB15Q9Y5E8 787 aa19.66■□□□□ 0.74
COL9A3-208ENST00000469802 COL11A1P12107 1806 aaPredicted RBP19.65■□□□□ 0.74
COL9A3-208ENST00000469802 CNMDO75829 334 aa19.65■□□□□ 0.74
COL9A3-208ENST00000469802 SGPL1O95470 568 aa19.65■□□□□ 0.74
COL9A3-208ENST00000469802 MAPK4P31152 587 aa19.65■□□□□ 0.74
COL9A3-208ENST00000469802 Q3C1V9 767 aa19.65■□□□□ 0.74
COL9A3-208ENST00000469802 C12orf60Q5U649 245 aa19.65■□□□□ 0.74
COL9A3-208ENST00000469802 CATSPERGQ6ZRH7 1159 aa19.65■□□□□ 0.74
COL9A3-208ENST00000469802 SOCS4Q8WXH5 440 aa19.65■□□□□ 0.74
COL9A3-208ENST00000469802 GCC1Q96CN9 775 aa19.65■□□□□ 0.74
COL9A3-208ENST00000469802 DYNLL2Q96FJ2 89 aa19.65■□□□□ 0.74
COL9A3-208ENST00000469802 PUS7LQ9H0K6 701 aaKnown RBP19.65■□□□□ 0.74
COL9A3-208ENST00000469802 PORCNQ9H237 461 aa19.65■□□□□ 0.74
COL9A3-208ENST00000469802 A0A1W2PRG0 241 aa19.64■□□□□ 0.73
COL9A3-208ENST00000469802 SMIM22K7EJ46 135 aa19.64■□□□□ 0.73
COL9A3-208ENST00000469802 CAPN2P17655 700 aa19.64■□□□□ 0.73
COL9A3-208ENST00000469802 RRP1P56182 461 aaKnown RBP19.64■□□□□ 0.73
COL9A3-208ENST00000469802 TMEM179Q6ZVK1 233 aa19.64■□□□□ 0.73
COL9A3-208ENST00000469802 KBTBD3Q8NAB2 608 aa19.64■□□□□ 0.73
COL9A3-208ENST00000469802 TRIB2Q92519 343 aa19.64■□□□□ 0.73
COL9A3-208ENST00000469802 USP6NLQ92738 828 aa19.64■□□□□ 0.73
COL9A3-208ENST00000469802 PAGR1Q9BTK6 254 aa19.64■□□□□ 0.73
COL9A3-208ENST00000469802 CRISPLD2Q9H0B8 497 aa19.64■□□□□ 0.73
COL9A3-208ENST00000469802 RABGAP1Q9Y3P9 1069 aa19.64■□□□□ 0.73
COL9A3-208ENST00000469802 CYP2D7A0A087X1C5 515 aa19.63■□□□□ 0.73
COL9A3-208ENST00000469802 SPDYE16A6NNV3 312 aaPredicted RBP19.63■□□□□ 0.73
COL9A3-208ENST00000469802 XRCC5P13010 732 aaKnown RBP19.63■□□□□ 0.73
COL9A3-208ENST00000469802 TSHZ3Q63HK5 1081 aa19.63■□□□□ 0.73
COL9A3-208ENST00000469802 GPR142Q7Z601 462 aa19.63■□□□□ 0.73
COL9A3-208ENST00000469802 GPATCH3Q96I76 525 aa19.63■□□□□ 0.73
COL9A3-208ENST00000469802 DEFB118Q96PH6 123 aa19.63■□□□□ 0.73
COL9A3-208ENST00000469802 XRN2Q9H0D6 950 aaKnown RBP eCLIP19.63■□□□□ 0.734e-7■□□□□ 8.1
COL9A3-208ENST00000469802 RPAP3Q9H6T3 665 aaPredicted RBP19.63■□□□□ 0.73
COL9A3-208ENST00000469802 USP17L12C9JPN9 530 aa19.62■□□□□ 0.73
COL9A3-208ENST00000469802 USP17L21D6R901 530 aa19.62■□□□□ 0.73
COL9A3-208ENST00000469802 MPHOSPH10O00566 681 aaKnown RBP19.62■□□□□ 0.73
COL9A3-208ENST00000469802 FARP2O94887 1054 aaPredicted RBP19.62■□□□□ 0.73
COL9A3-208ENST00000469802 AKR1B1P15121 316 aa19.62■□□□□ 0.73
COL9A3-208ENST00000469802 MORN1Q5T089 497 aa19.62■□□□□ 0.73
COL9A3-208ENST00000469802 MAP3K21Q5TCX8 1036 aa19.62■□□□□ 0.73
COL9A3-208ENST00000469802 C16orf86Q6ZW13 317 aa19.62■□□□□ 0.73
COL9A3-208ENST00000469802 NUDT12Q9BQG2 462 aa19.62■□□□□ 0.73
COL9A3-208ENST00000469802 SLC4A4Q9Y6R1 1079 aa19.62■□□□□ 0.73
COL9A3-208ENST00000469802 MYH4Q9Y623 1939 aa19.62■□□□□ 0.73
COL9A3-208ENST00000469802 ROBO3Q96MS0 1386 aa19.61■□□□□ 0.73
COL9A3-208ENST00000469802 TTC41PQ6P2S7 1318 aa19.61■□□□□ 0.73
COL9A3-208ENST00000469802 CDK8P49336 464 aa19.61■□□□□ 0.73
COL9A3-208ENST00000469802 TRIM32Q13049 653 aa19.61■□□□□ 0.73
COL9A3-208ENST00000469802 CLEC10AQ8IUN9 316 aa19.61■□□□□ 0.73
COL9A3-208ENST00000469802 SIAH1Q8IUQ4 282 aa19.61■□□□□ 0.73
COL9A3-208ENST00000469802 CCDC17Q96LX7 622 aa19.61■□□□□ 0.73
COL9A3-208ENST00000469802 STRBPQ96SI9 672 aaKnown RBP19.61■□□□□ 0.73
COL9A3-208ENST00000469802 CYP2B6P20813 491 aa19.6■□□□□ 0.73
COL9A3-208ENST00000469802 KIAA1755Q5JYT7 1200 aa19.6■□□□□ 0.73
COL9A3-208ENST00000469802 CTR9Q6PD62 1173 aa19.6■□□□□ 0.73
COL9A3-208ENST00000469802 PLEKHH3Q7Z736 793 aa19.6■□□□□ 0.73
COL9A3-208ENST00000469802 AMOTL1Q8IY63 956 aa19.6■□□□□ 0.73
COL9A3-208ENST00000469802 APPBP2Q92624 585 aa19.6■□□□□ 0.73
COL9A3-208ENST00000469802 OSBP2Q969R2 916 aa19.6■□□□□ 0.73
COL9A3-208ENST00000469802 DDRGK1Q96HY6 314 aa19.6■□□□□ 0.73
COL9A3-208ENST00000469802 BTBD7Q9P203 1132 aa19.6■□□□□ 0.73
COL9A3-208ENST00000469802 ARPP21Q9UBL0 812 aaPredicted RBP19.6■□□□□ 0.73
COL9A3-208ENST00000469802 RPTORQ8N122 1335 aa19.59■□□□□ 0.73
COL9A3-208ENST00000469802 RGS2P41220 211 aa19.59■□□□□ 0.73
COL9A3-208ENST00000469802 CCNA1P78396 465 aa19.59■□□□□ 0.73
Retrieved 100 of 20,778 RNA–protein pairs in 9.1 ms