RNA–Protein interactions for RNA: ENST00000469585.5

PTCD3-208, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 2

Gene PTCD3, Length 885 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-208ENST00000469585 C14orf93Q9H972 538 aaKnown RBP8.69□□□□□ -1.02
PTCD3-208ENST00000469585 ADAMTS1Q9UHI8 967 aa8.69□□□□□ -1.02
PTCD3-208ENST00000469585 EPB41L3Q9Y2J2 1087 aaPredicted RBP8.69□□□□□ -1.02
PTCD3-208ENST00000469585 METP08581 1390 aa8.69□□□□□ -1.02
PTCD3-208ENST00000469585 EIF3AQ14152 1382 aaKnown RBP8.69□□□□□ -1.02
PTCD3-208ENST00000469585 PTCH1Q13635 1447 aa8.69□□□□□ -1.02
PTCD3-208ENST00000469585 MEGF11A6BM72 1044 aa8.68□□□□□ -1.02
PTCD3-208ENST00000469585 ZNF862O60290 1169 aa8.68□□□□□ -1.02
PTCD3-208ENST00000469585 EIF4A3P38919 411 aaKnown RBP8.68□□□□□ -1.02
PTCD3-208ENST00000469585 PTPN11Q06124 597 aaPredicted RBP8.68□□□□□ -1.02
PTCD3-208ENST00000469585 ACAD11Q709F0 780 aa8.68□□□□□ -1.02
PTCD3-208ENST00000469585 TMPRSS13Q9BYE2 586 aa8.68□□□□□ -1.02
PTCD3-208ENST00000469585 LRPPRCP42704 1394 aaKnown RBP8.68□□□□□ -1.02
PTCD3-208ENST00000469585 DCCP43146 1447 aa8.68□□□□□ -1.02
PTCD3-208ENST00000469585 IFT172Q9UG01 1749 aa8.68□□□□□ -1.02
PTCD3-208ENST00000469585 FAM160A1Q05DH4 1040 aa8.67□□□□□ -1.02
PTCD3-208ENST00000469585 EXOSC6Q5RKV6 272 aaKnown RBP8.67□□□□□ -1.02
PTCD3-208ENST00000469585 HP1BP3Q5SSJ5 553 aaPredicted RBP8.67□□□□□ -1.02
PTCD3-208ENST00000469585 FBXL19Q6PCT2 694 aa8.67□□□□□ -1.02
PTCD3-208ENST00000469585 CCDC84Q86UT8 332 aaPredicted RBP8.67□□□□□ -1.02
PTCD3-208ENST00000469585 GPBAR1Q8TDU6 330 aa8.67□□□□□ -1.02
PTCD3-208ENST00000469585 WDR89Q96FK6 387 aaPredicted RBP8.67□□□□□ -1.02
PTCD3-208ENST00000469585 YTHDC2Q9H6S0 1430 aaKnown RBP8.67□□□□□ -1.02
PTCD3-208ENST00000469585 ROCK2O75116 1388 aaKnown RBP8.66□□□□□ -1.02
PTCD3-208ENST00000469585 ABCC11Q96J66 1382 aa8.66□□□□□ -1.02
PTCD3-208ENST00000469585 F8W735 103 aaPredicted RBP8.66□□□□□ -1.02
PTCD3-208ENST00000469585 RNF225M0QZC1 329 aaPredicted RBP8.66□□□□□ -1.02
PTCD3-208ENST00000469585 GREM1O60565 184 aa8.66□□□□□ -1.02
PTCD3-208ENST00000469585 LIG1P18858 919 aa8.66□□□□□ -1.02
PTCD3-208ENST00000469585 SEPT6Q14141 434 aa8.66□□□□□ -1.02
PTCD3-208ENST00000469585 PDE3AQ14432 1141 aa8.66□□□□□ -1.02
PTCD3-208ENST00000469585 KIF4BQ2VIQ3 1234 aa8.66□□□□□ -1.02
PTCD3-208ENST00000469585 TMEM132EQ6IEE7 984 aa8.66□□□□□ -1.02
PTCD3-208ENST00000469585 ZNF296Q8WUU4 475 aaPredicted RBP8.66□□□□□ -1.02
PTCD3-208ENST00000469585 SIN3AQ96ST3 1273 aa8.66□□□□□ -1.02
PTCD3-208ENST00000469585 WDR18Q9BV38 432 aa8.66□□□□□ -1.02
PTCD3-208ENST00000469585 RUSC1Q9BVN2 902 aa8.66□□□□□ -1.02
PTCD3-208ENST00000469585 RNF208Q9H0X6 261 aa8.66□□□□□ -1.02
PTCD3-208ENST00000469585 MIR1-1HGQ9H1L0 117 aa8.66□□□□□ -1.02
PTCD3-208ENST00000469585 ACBD3Q9H3P7 528 aa8.66□□□□□ -1.02
PTCD3-208ENST00000469585 NRXN3Q9Y4C0 1643 aa8.65□□□□□ -1.02
PTCD3-208ENST00000469585 ADGRL3Q9HAR2 1447 aa8.65□□□□□ -1.02
PTCD3-208ENST00000469585 SYNGAP1Q96PV0 1343 aa8.65□□□□□ -1.02
PTCD3-208ENST00000469585 C9orf172C9J069 976 aa8.65□□□□□ -1.02
PTCD3-208ENST00000469585 APBA3O96018 575 aa8.65□□□□□ -1.02
PTCD3-208ENST00000469585 GSK3AP49840 483 aa8.65□□□□□ -1.02
PTCD3-208ENST00000469585 BNC2Q6ZN30 1099 aaPredicted RBP8.65□□□□□ -1.02
PTCD3-208ENST00000469585 AGGF1Q8N302 714 aaeCLIP8.65□□□□□ -1.02
PTCD3-208ENST00000469585 GOLM1Q8NBJ4 401 aa8.65□□□□□ -1.02
PTCD3-208ENST00000469585 NACC1Q96RE7 527 aa8.65□□□□□ -1.02
PTCD3-208ENST00000469585 SPON2Q9BUD6 331 aa8.65□□□□□ -1.02
PTCD3-208ENST00000469585 PCDHGC5Q9Y5F6 944 aa8.65□□□□□ -1.02
PTCD3-208ENST00000469585 XRN1Q8IZH2 1706 aaKnown RBP8.65□□□□□ -1.03
PTCD3-208ENST00000469585 NRXN1Q9ULB1 1477 aa8.64□□□□□ -1.03
PTCD3-208ENST00000469585 FAM135BQ49AJ0 1406 aa8.64□□□□□ -1.03
PTCD3-208ENST00000469585 STRCP1A6NGW2 1772 aa8.64□□□□□ -1.03
PTCD3-208ENST00000469585 FAM221AA4D161 298 aa8.64□□□□□ -1.03
PTCD3-208ENST00000469585 KRBA1A5PL33 1030 aa8.64□□□□□ -1.03
PTCD3-208ENST00000469585 AOC2O75106 756 aa8.64□□□□□ -1.03
PTCD3-208ENST00000469585 LMNB1P20700 586 aa8.64□□□□□ -1.03
PTCD3-208ENST00000469585 NRG1Q02297 640 aaPredicted RBP8.64□□□□□ -1.03
PTCD3-208ENST00000469585 SAFB2Q14151 953 aaKnown RBP eCLIP8.64□□□□□ -1.03
PTCD3-208ENST00000469585 SNAP47Q5SQN1 464 aa8.64□□□□□ -1.03
PTCD3-208ENST00000469585 Q6ZS46 218 aa8.64□□□□□ -1.03
PTCD3-208ENST00000469585 KIAA0825Q8IV33 1275 aa8.64□□□□□ -1.03
PTCD3-208ENST00000469585 DCAF5Q96JK2 942 aa8.64□□□□□ -1.03
PTCD3-208ENST00000469585 PRAM1Q96QH2 718 aa8.64□□□□□ -1.03
PTCD3-208ENST00000469585 CCSER2Q9H7U1 834 aa8.64□□□□□ -1.03
PTCD3-208ENST00000469585 SUGCTQ9HAC7 445 aa8.64□□□□□ -1.03
PTCD3-208ENST00000469585 USP21Q9UK80 565 aa8.64□□□□□ -1.03
PTCD3-208ENST00000469585 SUPT16HQ9Y5B9 1047 aaKnown RBP8.64□□□□□ -1.03
PTCD3-208ENST00000469585 PTPRUQ92729 1446 aa8.63□□□□□ -1.03
PTCD3-208ENST00000469585 ALX3O95076 343 aa8.63□□□□□ -1.03
PTCD3-208ENST00000469585 F13A1P00488 732 aa8.63□□□□□ -1.03
PTCD3-208ENST00000469585 ADGRE1Q14246 886 aa8.63□□□□□ -1.03
PTCD3-208ENST00000469585 PDZRN4Q6ZMN7 1036 aaPredicted RBP8.63□□□□□ -1.03
PTCD3-208ENST00000469585 FAM196AQ6ZSG2 479 aa8.63□□□□□ -1.03
PTCD3-208ENST00000469585 SMG8Q8ND04 991 aaKnown RBP8.63□□□□□ -1.03
PTCD3-208ENST00000469585 GATAD2BQ8WXI9 593 aa8.63□□□□□ -1.03
PTCD3-208ENST00000469585 EAF1Q96JC9 268 aaPredicted RBP8.63□□□□□ -1.03
PTCD3-208ENST00000469585 AKTIPQ9H8T0 292 aa8.63□□□□□ -1.03
PTCD3-208ENST00000469585 TECPR2O15040 1411 aa8.63□□□□□ -1.03
PTCD3-208ENST00000469585 PRAG1Q86YV5 1406 aa8.63□□□□□ -1.03
PTCD3-208ENST00000469585 ROBO2Q9HCK4 1378 aa8.62□□□□□ -1.03
PTCD3-208ENST00000469585 CILPO75339 1184 aa8.62□□□□□ -1.03
PTCD3-208ENST00000469585 NOS3P29474 1203 aa8.62□□□□□ -1.03
PTCD3-208ENST00000469585 TNNI2P48788 182 aa8.62□□□□□ -1.03
PTCD3-208ENST00000469585 KCNMA1Q12791 1236 aa8.62□□□□□ -1.03
PTCD3-208ENST00000469585 PAK2Q13177 524 aa8.62□□□□□ -1.03
PTCD3-208ENST00000469585 MBTPS1Q14703 1052 aa8.62□□□□□ -1.03
PTCD3-208ENST00000469585 NUTM2GQ5VZR2 741 aa8.62□□□□□ -1.03
PTCD3-208ENST00000469585 JARID2Q92833 1246 aaPredicted RBP8.62□□□□□ -1.03
PTCD3-208ENST00000469585 ACSBG1Q96GR2 724 aa8.62□□□□□ -1.03
PTCD3-208ENST00000469585 TINF2Q9BSI4 451 aa8.62□□□□□ -1.03
PTCD3-208ENST00000469585 NT5C1AQ9BXI3 368 aa8.62□□□□□ -1.03
PTCD3-208ENST00000469585 CARD11Q9BXL7 1154 aa8.62□□□□□ -1.03
PTCD3-208ENST00000469585 PCDHA4Q9UN74 947 aa8.62□□□□□ -1.03
PTCD3-208ENST00000469585 KNDC1Q76NI1 1749 aa8.62□□□□□ -1.03
PTCD3-208ENST00000469585 KIAA1210Q9ULL0 1709 aa8.62□□□□□ -1.03
PTCD3-208ENST00000469585 DLC1Q96QB1 1528 aa8.61□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 37.6 ms