RNA–Protein interactions for RNA: ENST00000469054.1

VPS13D-204, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 3

Gene VPS13D, Length 567 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-204ENST00000469054 PRRT2Q7Z6L0 340 aaPredicted RBP14.17□□□□□ -0.14
VPS13D-204ENST00000469054 TBC1D10CQ8IV04 446 aa14.17□□□□□ -0.14
VPS13D-204ENST00000469054 STAG1Q8WVM7 1258 aa14.17□□□□□ -0.14
VPS13D-204ENST00000469054 GNL3Q9BVP2 549 aaKnown RBP eCLIP14.17□□□□□ -0.14
VPS13D-204ENST00000469054 NBPF3Q9H094 633 aa14.17□□□□□ -0.14
VPS13D-204ENST00000469054 RNF41Q9H4P4 317 aaPredicted RBP14.17□□□□□ -0.14
VPS13D-204ENST00000469054 KANSL2Q9H9L4 492 aa14.17□□□□□ -0.14
VPS13D-204ENST00000469054 ANO2Q9NQ90 1003 aa14.17□□□□□ -0.14
VPS13D-204ENST00000469054 C19orf81C9J6K1 198 aa14.16□□□□□ -0.14
VPS13D-204ENST00000469054 IGF2BP3O00425 579 aaKnown RBP eCLIP14.16□□□□□ -0.14
VPS13D-204ENST00000469054 ORC4O43929 436 aa14.16□□□□□ -0.14
VPS13D-204ENST00000469054 ALDH1A1P00352 501 aa14.16□□□□□ -0.14
VPS13D-204ENST00000469054 TSPY3P0CV98 308 aa14.16□□□□□ -0.14
VPS13D-204ENST00000469054 TSPY8P0CW00 308 aa14.16□□□□□ -0.14
VPS13D-204ENST00000469054 TFAP4Q01664 338 aa14.16□□□□□ -0.14
VPS13D-204ENST00000469054 ICA1Q05084 483 aa14.16□□□□□ -0.14
VPS13D-204ENST00000469054 MTMR2Q13614 643 aa14.16□□□□□ -0.14
VPS13D-204ENST00000469054 MOGSQ13724 837 aa14.16□□□□□ -0.14
VPS13D-204ENST00000469054 SH3D19Q5HYK7 790 aa14.16□□□□□ -0.14
VPS13D-204ENST00000469054 FAM47AQ5JRC9 791 aa14.16□□□□□ -0.14
VPS13D-204ENST00000469054 NEDD1Q8NHV4 660 aa14.16□□□□□ -0.14
VPS13D-204ENST00000469054 TOMM22Q9NS69 142 aa14.16□□□□□ -0.14
VPS13D-204ENST00000469054 RNF186Q9NXI6 227 aa14.16□□□□□ -0.14
VPS13D-204ENST00000469054 RBM8AQ9Y5S9 174 aaKnown RBP14.16□□□□□ -0.14
VPS13D-204ENST00000469054 TSPY2A6NKD2 308 aa14.15□□□□□ -0.14
VPS13D-204ENST00000469054 BTBD19C9JJ37 291 aa14.15□□□□□ -0.14
VPS13D-204ENST00000469054 RANBP6O60518 1105 aaKnown RBP14.15□□□□□ -0.14
VPS13D-204ENST00000469054 CYP21A2P08686 494 aa14.15□□□□□ -0.14
VPS13D-204ENST00000469054 HSPA1AP0DMV8 641 aaKnown RBP14.15□□□□□ -0.14
VPS13D-204ENST00000469054 HSPA1BP0DMV9 641 aaKnown RBP14.15□□□□□ -0.14
VPS13D-204ENST00000469054 HMGCS2P54868 508 aa14.15□□□□□ -0.14
VPS13D-204ENST00000469054 RRP12Q5JTH9 1297 aaKnown RBP14.15□□□□□ -0.14
VPS13D-204ENST00000469054 SIAH1Q8IUQ4 282 aa14.15□□□□□ -0.14
VPS13D-204ENST00000469054 FAM43AQ8N2R8 423 aa14.15□□□□□ -0.14
VPS13D-204ENST00000469054 ACER1Q8TDN7 264 aa14.15□□□□□ -0.14
VPS13D-204ENST00000469054 THSD7BQ9C0I4 1608 aa14.15□□□□□ -0.14
VPS13D-204ENST00000469054 CEP350Q5VT06 3117 aa14.15□□□□□ -0.14
VPS13D-204ENST00000469054 IGKV6D-41A0A0C4DH26 115 aa14.14□□□□□ -0.15
VPS13D-204ENST00000469054 A0A1W2PRG0 241 aa14.14□□□□□ -0.15
VPS13D-204ENST00000469054 CA12O43570 354 aa14.14□□□□□ -0.15
VPS13D-204ENST00000469054 TRPA1O75762 1119 aa14.14□□□□□ -0.15
VPS13D-204ENST00000469054 EEF2P13639 858 aaKnown RBP14.14□□□□□ -0.15
VPS13D-204ENST00000469054 NT5C2P49902 561 aa14.14□□□□□ -0.15
VPS13D-204ENST00000469054 USP14P54578 494 aa14.14□□□□□ -0.15
VPS13D-204ENST00000469054 GPAT2Q6NUI2 795 aa14.14□□□□□ -0.15
VPS13D-204ENST00000469054 USP17L2Q6R6M4 530 aa14.14□□□□□ -0.15
VPS13D-204ENST00000469054 GADL1Q6ZQY3 521 aa14.14□□□□□ -0.15
VPS13D-204ENST00000469054 ANKRD23Q86SG2 305 aa14.14□□□□□ -0.15
VPS13D-204ENST00000469054 CLEC10AQ8IUN9 316 aa14.14□□□□□ -0.15
VPS13D-204ENST00000469054 PROCA1Q8NCQ7 364 aaPredicted RBP14.14□□□□□ -0.15
VPS13D-204ENST00000469054 CEP95Q96GE4 821 aa14.14□□□□□ -0.15
VPS13D-204ENST00000469054 FEZ1Q99689 392 aa14.14□□□□□ -0.15
VPS13D-204ENST00000469054 KIAA1683Q9H0B3 1180 aa14.14□□□□□ -0.15
VPS13D-204ENST00000469054 ARHGEF10LQ9HCE6 1279 aa14.14□□□□□ -0.15
VPS13D-204ENST00000469054 ZCCHC17Q9NP64 241 aaKnown RBP14.14□□□□□ -0.15
VPS13D-204ENST00000469054 SAGE1Q9NXZ1 904 aa14.14□□□□□ -0.15
VPS13D-204ENST00000469054 TMOD4Q9NZQ9 345 aa14.14□□□□□ -0.15
VPS13D-204ENST00000469054 NEDD4P46934 1319 aa14.14□□□□□ -0.15
VPS13D-204ENST00000469054 PLIN4Q96Q06 1357 aa14.13□□□□□ -0.15
VPS13D-204ENST00000469054 DOCK1Q14185 1865 aa14.13□□□□□ -0.15
VPS13D-204ENST00000469054 DGKZQ13574 1117 aa14.13□□□□□ -0.15
VPS13D-204ENST00000469054 NECTIN1Q15223 517 aa14.13□□□□□ -0.15
VPS13D-204ENST00000469054 ESR2Q92731 530 aa14.13□□□□□ -0.15
VPS13D-204ENST00000469054 C12orf42Q96LP6 360 aa14.13□□□□□ -0.15
VPS13D-204ENST00000469054 SH2D4AQ9H788 454 aa14.13□□□□□ -0.15
VPS13D-204ENST00000469054 EMILIN3Q9NT22 766 aa14.13□□□□□ -0.15
VPS13D-204ENST00000469054 MTMR4Q9NYA4 1195 aa14.13□□□□□ -0.15
VPS13D-204ENST00000469054 NYAP2Q9P242 653 aa14.13□□□□□ -0.15
VPS13D-204ENST00000469054 AGTPBP1Q9UPW5 1226 aa14.13□□□□□ -0.15
VPS13D-204ENST00000469054 TMX2Q9Y320 296 aa14.13□□□□□ -0.15
VPS13D-204ENST00000469054 B4E1Z4 1266 aa14.12□□□□□ -0.15
VPS13D-204ENST00000469054 PDHXO00330 501 aa14.12□□□□□ -0.15
VPS13D-204ENST00000469054 REC8O95072 547 aa14.12□□□□□ -0.15
VPS13D-204ENST00000469054 TTLL1O95922 423 aa14.12□□□□□ -0.15
VPS13D-204ENST00000469054 ATP2B2Q01814 1243 aa14.12□□□□□ -0.15
VPS13D-204ENST00000469054 ZYXQ15942 572 aaKnown RBP14.12□□□□□ -0.15
VPS13D-204ENST00000469054 PPP4R3BQ5MIZ7 849 aa14.12□□□□□ -0.15
VPS13D-204ENST00000469054 TREML2Q5T2D2 321 aa14.12□□□□□ -0.15
VPS13D-204ENST00000469054 NKX2-3Q8TAU0 364 aa14.12□□□□□ -0.15
VPS13D-204ENST00000469054 CFHR5Q9BXR6 569 aa14.12□□□□□ -0.15
VPS13D-204ENST00000469054 KRT23Q9C075 422 aa14.12□□□□□ -0.15
VPS13D-204ENST00000469054 CNNM2Q9H8M5 875 aa14.12□□□□□ -0.15
VPS13D-204ENST00000469054 IL17RBQ9NRM6 502 aa14.12□□□□□ -0.15
VPS13D-204ENST00000469054 TCP11L1Q9NUJ3 509 aa14.12□□□□□ -0.15
VPS13D-204ENST00000469054 SLC45A1Q9Y2W3 748 aa14.12□□□□□ -0.15
VPS13D-204ENST00000469054 SLC27A2O14975 620 aa14.11□□□□□ -0.15
VPS13D-204ENST00000469054 FOXN1O15353 648 aa14.11□□□□□ -0.15
VPS13D-204ENST00000469054 KDM4AO75164 1064 aa14.11□□□□□ -0.15
VPS13D-204ENST00000469054 TRDNQ13061 729 aa14.11□□□□□ -0.15
VPS13D-204ENST00000469054 TAF1CQ15572 869 aaPredicted RBP14.11□□□□□ -0.15
VPS13D-204ENST00000469054 RNF20Q5VTR2 975 aa14.11□□□□□ -0.15
VPS13D-204ENST00000469054 CREB3L3Q68CJ9 461 aa14.11□□□□□ -0.15
VPS13D-204ENST00000469054 MKL1Q969V6 931 aa14.11□□□□□ -0.15
VPS13D-204ENST00000469054 VCPKMTQ9H867 229 aa14.11□□□□□ -0.15
VPS13D-204ENST00000469054 ZFYVE28Q9HCC9 887 aa14.11□□□□□ -0.15
VPS13D-204ENST00000469054 CLIP2Q9UDT6 1046 aa14.11□□□□□ -0.15
VPS13D-204ENST00000469054 TAF6LQ9Y6J9 622 aa14.11□□□□□ -0.15
VPS13D-204ENST00000469054 LAMB1P07942 1786 aa14.1□□□□□ -0.15
VPS13D-204ENST00000469054 E7EWF7 191 aa14.1□□□□□ -0.15
VPS13D-204ENST00000469054 EPB41L2O43491 1005 aaKnown RBP14.1□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 96 ms