RNA–Protein interactions for RNA: ENST00000464168.5

USP4-208, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 4

Gene USP4, Length 601 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-208ENST00000464168 USP17L17D6RBQ6 530 aa27.53■■■□□ 2
USP4-208ENST00000464168 USP17L19D6RCP7 530 aa27.53■■■□□ 2
USP4-208ENST00000464168 USP17L20D6RJB6 530 aa27.53■■■□□ 2
USP4-208ENST00000464168 CNMDO75829 334 aa27.53■■■□□ 2
USP4-208ENST00000464168 RGS2P41220 211 aa27.53■■■□□ 2
USP4-208ENST00000464168 USP17L24Q0WX57 530 aa27.53■■■□□ 2
USP4-208ENST00000464168 RAB3GAP1Q15042 981 aa27.53■■■□□ 2
USP4-208ENST00000464168 CCL14Q16627 93 aa27.53■■■□□ 2
USP4-208ENST00000464168 CERKLQ49MI3 558 aaPredicted RBP27.53■■■□□ 2
USP4-208ENST00000464168 ERC1Q8IUD2 1116 aa27.53■■■□□ 2
USP4-208ENST00000464168 FEZ1Q99689 392 aa27.53■■■□□ 2
USP4-208ENST00000464168 RIOK1Q9BRS2 568 aaKnown RBP27.53■■■□□ 2
USP4-208ENST00000464168 ZMYND8Q9ULU4 1186 aaPredicted RBP27.53■■■□□ 2
USP4-208ENST00000464168 RABGAP1Q9Y3P9 1069 aa27.53■■■□□ 2
USP4-208ENST00000464168 PLCD1P51178 756 aa27.52■■■□□ 2
USP4-208ENST00000464168 CATSPERGQ6ZRH7 1159 aa27.52■■■□□ 2
USP4-208ENST00000464168 ACER1Q8TDN7 264 aa27.52■■■□□ 2
USP4-208ENST00000464168 KIAA1683Q9H0B3 1180 aa27.52■■■□□ 2
USP4-208ENST00000464168 BMP8BP34820 402 aa27.51■■□□□ 1.99
USP4-208ENST00000464168 SHMT1P34896 483 aa27.51■■□□□ 1.99
USP4-208ENST00000464168 USP14P54578 494 aa27.51■■□□□ 1.99
USP4-208ENST00000464168 ABCB5Q2M3G0 1257 aa27.51■■□□□ 1.99
USP4-208ENST00000464168 LHX8Q68G74 356 aa27.51■■□□□ 1.99
USP4-208ENST00000464168 LRCH3Q96II8 777 aa27.51■■□□□ 1.99
USP4-208ENST00000464168 MYH1P12882 1939 aa27.51■■□□□ 1.99
USP4-208ENST00000464168 PFASO15067 1338 aa27.5■■□□□ 1.99
USP4-208ENST00000464168 CCND3P30281 292 aaPredicted RBP27.5■■□□□ 1.99
USP4-208ENST00000464168 PANK1Q8TE04 598 aa27.5■■□□□ 1.99
USP4-208ENST00000464168 APBA2Q99767 749 aa27.5■■□□□ 1.99
USP4-208ENST00000464168 VCAM1P19320 739 aa27.49■■□□□ 1.99
USP4-208ENST00000464168 GUCY1A2P33402 732 aa27.49■■□□□ 1.99
USP4-208ENST00000464168 MAP2K5Q13163 448 aa27.49■■□□□ 1.99
USP4-208ENST00000464168 IL1RAPL2Q9NP60 686 aa27.49■■□□□ 1.99
USP4-208ENST00000464168 CABP5Q9NP86 173 aa27.49■■□□□ 1.99
USP4-208ENST00000464168 COL6A3P12111 3177 aa27.49■■□□□ 1.99
USP4-208ENST00000464168 DDX60LQ5H9U9 1706 aaKnown RBP27.48■■□□□ 1.99
USP4-208ENST00000464168 MAGEB6P1A0A0J9YX57 407 aa27.48■■□□□ 1.99
USP4-208ENST00000464168 COL6A1P12109 1028 aa27.48■■□□□ 1.99
USP4-208ENST00000464168 SYN1P17600 705 aa27.48■■□□□ 1.99
USP4-208ENST00000464168 CCNA1P78396 465 aa27.48■■□□□ 1.99
USP4-208ENST00000464168 EDC3Q96F86 508 aaKnown RBP27.48■■□□□ 1.99
USP4-208ENST00000464168 GABPAQ06546 454 aa27.47■■□□□ 1.99
USP4-208ENST00000464168 SLC9C2Q5TAH2 1124 aa27.47■■□□□ 1.99
USP4-208ENST00000464168 LBX2Q6XYB7 198 aa27.47■■□□□ 1.99
USP4-208ENST00000464168 RHPN1Q8TCX5 695 aa27.47■■□□□ 1.99
USP4-208ENST00000464168 CWC22Q9HCG8 908 aaKnown RBP27.47■■□□□ 1.99
USP4-208ENST00000464168 BTBD7Q9P203 1132 aa27.47■■□□□ 1.99
USP4-208ENST00000464168 A0A0C4DFX4 3053 aa27.47■■□□□ 1.99
USP4-208ENST00000464168 GLRX3O76003 335 aaKnown RBP27.46■■□□□ 1.99
USP4-208ENST00000464168 POLR3DP05423 398 aaPredicted RBP27.46■■□□□ 1.99
USP4-208ENST00000464168 PDE6AP16499 860 aa27.46■■□□□ 1.99
USP4-208ENST00000464168 TTF1Q15361 905 aaPredicted RBP27.46■■□□□ 1.99
USP4-208ENST00000464168 HSP90AB4PQ58FF6 505 aa27.46■■□□□ 1.99
USP4-208ENST00000464168 SLC15A5A6NIM6 579 aa27.45■■□□□ 1.98
USP4-208ENST00000464168 PTPREP23469 700 aa27.45■■□□□ 1.98
USP4-208ENST00000464168 MAGEA10P43363 369 aaPredicted RBP27.45■■□□□ 1.98
USP4-208ENST00000464168 EVX2Q03828 476 aa27.45■■□□□ 1.98
USP4-208ENST00000464168 SEPT2Q15019 361 aa27.45■■□□□ 1.98
USP4-208ENST00000464168 MIER1Q8N108 512 aa27.45■■□□□ 1.98
USP4-208ENST00000464168 RPAP3Q9H6T3 665 aaPredicted RBP27.45■■□□□ 1.98
USP4-208ENST00000464168 FLRT1Q9NZU1 646 aa27.45■■□□□ 1.98
USP4-208ENST00000464168 DNAH12Q6ZR08 3092 aa27.44■■□□□ 1.98
USP4-208ENST00000464168 SPDYE16A6NNV3 312 aaPredicted RBP27.44■■□□□ 1.98
USP4-208ENST00000464168 WDR78Q5VTH9 848 aa27.44■■□□□ 1.98
USP4-208ENST00000464168 CRNKL1Q9BZJ0 848 aaKnown RBP27.44■■□□□ 1.98
USP4-208ENST00000464168 MCM9Q9NXL9 1143 aa27.43■■□□□ 1.98
USP4-208ENST00000464168 A0A1W2PRG0 241 aa27.42■■□□□ 1.98
USP4-208ENST00000464168 TCRBV5S4A2TA0A5A2 114 aa27.42■■□□□ 1.98
USP4-208ENST00000464168 HOXC6P09630 235 aa27.42■■□□□ 1.98
USP4-208ENST00000464168 GRB14Q14449 540 aa27.42■■□□□ 1.98
USP4-208ENST00000464168 MFSD14CQ5VZR4 134 aa27.42■■□□□ 1.98
USP4-208ENST00000464168 ZNF532Q9HCE3 1301 aa27.41■■□□□ 1.98
USP4-208ENST00000464168 GOLIM4O00461 696 aa27.41■■□□□ 1.98
USP4-208ENST00000464168 LRRC26Q2I0M4 334 aa27.41■■□□□ 1.98
USP4-208ENST00000464168 CLASRPQ8N2M8 674 aaKnown RBP27.41■■□□□ 1.98
USP4-208ENST00000464168 PPIL4Q8WUA2 492 aaKnown RBP eCLIP27.41■■□□□ 1.98
USP4-208ENST00000464168 APBB1O00213 710 aa27.4■■□□□ 1.98
USP4-208ENST00000464168 NPLOC4Q8TAT6 608 aa27.4■■□□□ 1.98
USP4-208ENST00000464168 SDR42E1Q8WUS8 393 aa27.4■■□□□ 1.98
USP4-208ENST00000464168 KIF1BPQ96EK5 621 aa27.4■■□□□ 1.98
USP4-208ENST00000464168 DNAJC2Q99543 621 aaKnown RBP27.4■■□□□ 1.98
USP4-208ENST00000464168 DCP1AQ9NPI6 582 aaPredicted RBP27.4■■□□□ 1.98
USP4-208ENST00000464168 IVNS1ABPQ9Y6Y0 642 aa27.4■■□□□ 1.98
USP4-208ENST00000464168 MPHOSPH10O00566 681 aaKnown RBP27.39■■□□□ 1.98
USP4-208ENST00000464168 IGHA2P01877 340 aa27.39■■□□□ 1.98
USP4-208ENST00000464168 CYP2D6P10635 497 aa27.39■■□□□ 1.98
USP4-208ENST00000464168 ATP2B2Q01814 1243 aa27.39■■□□□ 1.98
USP4-208ENST00000464168 LRIT3Q3SXY7 679 aa27.39■■□□□ 1.98
USP4-208ENST00000464168 SIRT2Q8IXJ6 389 aa27.39■■□□□ 1.98
USP4-208ENST00000464168 LCORLQ8N3X6 602 aa27.39■■□□□ 1.98
USP4-208ENST00000464168 IFIT2P09913 472 aaKnown RBP27.38■■□□□ 1.97
USP4-208ENST00000464168 COG2Q14746 738 aa27.38■■□□□ 1.97
USP4-208ENST00000464168 GPR153Q6NV75 609 aa27.38■■□□□ 1.97
USP4-208ENST00000464168 RPAP2Q8IXW5 612 aaPredicted RBP27.38■■□□□ 1.97
USP4-208ENST00000464168 TDHQ8IZJ6 230 aa27.38■■□□□ 1.97
USP4-208ENST00000464168 SLC44A5Q8NCS7 719 aa27.38■■□□□ 1.97
USP4-208ENST00000464168 UBE2OQ9C0C9 1292 aaKnown RBP27.38■■□□□ 1.97
USP4-208ENST00000464168 HOXC10Q9NYD6 342 aa27.38■■□□□ 1.97
USP4-208ENST00000464168 CYP2C19P33261 490 aa27.37■■□□□ 1.97
USP4-208ENST00000464168 KIAA1755Q5JYT7 1200 aa27.37■■□□□ 1.97
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms